NO12G03710, NO12G03710 (gene) Nannochloropsis oceanica

Overview
NameNO12G03710
Unique NameNO12G03710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1019
Alignment locationchr12:1025502..1026520 +

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Properties
Property NameValue
Description2fe-2s iron-sulfur cluster binding domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1025502..1026520 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
IPR001055Adrenodoxin
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
[Close]
BLAST of NO12G03710 vs. NCBI_GenBank
Match: EWM25673.1 (2fe-2s iron-sulfur cluster binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 1.400e-56
Identity = 109/144 (75.69%), Postives = 119/144 (82.64%), Query Frame = 0 
Query:   48 RQRQLHFAYHSTALCPKDIKMTWHVAGEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNMLGGEEGETAKPAGAPVDPWAK 192
            R+R L   YH T    KD+ MTWHV GE I VTA EGK+LLEVAH+NDIELEGACGGELACSTCHVVFTPELY +LP KKEEEEDMLDLAWGLT+TSRLGCQIKV+P+LENAVITIPEETNNMLGGE+      AG   +PWAK
Sbjct:   81 RRRLLRRTYHGTVPRAKDVTMTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNMLGGEDEGKGGAAGGQGEPWAK 224
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BLAST of NO12G03710 vs. NCBI_GenBank
Match: XP_005852372.1 (ferredoxin, partial [Nannochloropsis gaditana CCMP526] >EKU23455.1 ferredoxin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 161.8 bits (408), Expect = 2.200e-36
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0 
Query:   68 MTWHVAGEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIK 152
            MTWHV GE I VTA EGK+LLEVAH+NDIELEGACGGELACSTCHVVFTPELY +LP KKEEEEDMLDLAWGLT+TSRLGCQIK
Sbjct:    1 MTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIK 84
[Close]
BLAST of NO12G03710 vs. NCBI_GenBank
Match: OQS04894.1 (2Fe-2S ferredoxin [Thraustotheca clavata])

HSP 1 Score: 146.7 bits (369), Expect = 7.200e-32
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 0 
Query:   66 IKMTWHVA-GEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNML 172
            IK T+  A G+E  VT   G+++L++AH NDIELEGACGGELACSTCH VF P ++  LPE  EEEEDMLDLAWGLTDTSRLGCQIKV+  ++  ++ IP+E+NNM+
Sbjct:   36 IKFTFIEADGKEKQVTTPVGETILDIAHSNDIELEGACGGELACSTCHCVFEPSIFANLPEICEEEEDMLDLAWGLTDTSRLGCQIKVTKEMDGMIVKIPDESNNMI 142
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BLAST of NO12G03710 vs. NCBI_GenBank
Match: CBJ28611.1 (DNA polymerase III subunit delta\' [Ectocarpus siliculosus])

HSP 1 Score: 145.6 bits (366), Expect = 1.600e-31
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 0 
Query:   58 STALCPKDIKMTW-HVAGEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNM 171
            STA     + MT+    G EI V A  G +LLEVAHEND+ELEGACGG+LACSTCHVV   E Y KL EK+EEE+DMLDLAWGLTDTSRLGCQIKV+  LE  +I +PE++ +M
Sbjct:   63 STAARKDKVNMTFLEDDGTEIKVEAELGATLLEVAHENDVELEGACGGDLACSTCHVVLPKEYYDKLDEKEEEEDDMLDLAWGLTDTSRLGCQIKVTRDLEGMLIKVPEDSMDM 176
[Close]
BLAST of NO12G03710 vs. NCBI_GenBank
Match: XP_009514430.1 (hypothetical protein PHYSODRAFT_308575 [Phytophthora sojae] >EGZ27155.1 hypothetical protein PHYSODRAFT_308575 [Phytophthora sojae])

HSP 1 Score: 145.6 bits (366), Expect = 1.600e-31
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 0 
Query:   74 GEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNML 172
            GE   VTA EG++LL+VAHEND+ELEGACGGELACSTCH+VF   ++  LPE  EEEEDMLDLAWGLTDTSRLGCQI V+  +E   + IP+E +N++
Sbjct:   11 GESTSVTAEEGQTLLDVAHENDVELEGACGGELACSTCHLVFEKRIFDDLPEISEEEEDMLDLAWGLTDTSRLGCQITVTKEMEGMTVRIPDEADNLM 108
[Close]
BLAST of NO12G03710 vs. NCBI_GenBank
Match: OWZ19766.1 (2Fe-2S ferredoxin [Phytophthora megakarya])

HSP 1 Score: 145.6 bits (366), Expect = 1.600e-31
Identity = 66/98 (67.35%), Postives = 78/98 (79.59%), Query Frame = 0 
Query:   74 GEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNML 172
            GE   V A EG+SLL+VAHEND+ELEGACGGELACSTCH+VF   ++  LPE  EEEEDMLDLAWGLTDTSRLGCQI V+  +E   + IP+E +N+L
Sbjct:   22 GERSTVQAEEGQSLLDVAHENDVELEGACGGELACSTCHLVFEKRIFDDLPEISEEEEDMLDLAWGLTDTSRLGCQIPVTKAMEGMTVRIPDEADNLL 119
[Close]
BLAST of NO12G03710 vs. NCBI_GenBank
Match: POM69952.1 (2Fe-2S ferredoxin [Phytophthora palmivora var. palmivora])

HSP 1 Score: 144.8 bits (364), Expect = 2.700e-31
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 0 
Query:   74 GEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNML 172
            GE   V A EG+SLL+VAHEND+ELEGACGGELACSTCH+VF   ++  LPE  EEEEDMLDLAWGLTDTSRLGCQI V+  +E   + IP+E +N++
Sbjct:   48 GERTTVKAEEGQSLLDVAHENDVELEGACGGELACSTCHLVFEKRIFDNLPEISEEEEDMLDLAWGLTDTSRLGCQIPVTKEMEGMTVRIPDEADNLM 145
[Close]
BLAST of NO12G03710 vs. NCBI_GenBank
Match: GAX96833.1 (2Fe-2S ferredoxin, putative [Pythium insidiosum])

HSP 1 Score: 143.7 bits (361), Expect = 6.100e-31
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 0 
Query:   74 GEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNML 172
            G    V A  G++LL+VAHENDIELEGACGGELACSTCH+VF  +++ +LPE  EEEEDMLDLAWGLTDTSRLGCQI VS  LE   I +P+E+NN++
Sbjct:   71 GNASQVIANAGQTLLDVAHENDIELEGACGGELACSTCHLVFEKDVFDQLPEITEEEEDMLDLAWGLTDTSRLGCQIHVSKELEGTTIRVPDESNNLM 168
[Close]
BLAST of NO12G03710 vs. NCBI_GenBank
Match: XP_008862579.1 (hypothetical protein H310_01292 [Aphanomyces invadans] >ETW08774.1 hypothetical protein H310_01292 [Aphanomyces invadans])

HSP 1 Score: 142.5 bits (358), Expect = 1.400e-30
Identity = 81/159 (50.94%), Postives = 107/159 (67.30%), Query Frame = 0 
Query:   15 VSSSLPAIASVLLSSSLTHTSLTACSSNTSTRRRQRQLHFAY-HSTALCPKDIKMTWHVA-GEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNML 172
            +SS+L ++ S  + ++ T  S TA  S      +   +H A   ++ L    I++T+  A G +  VTAA G++ LE+AH NDIELEGACGGELACSTCH VF P +Y  LP   EEEEDMLD+AWGLTDTSRLGCQIK +P ++   +TIP+ +NNML
Sbjct:    2 MSSALRSVVSSAMRAA-TRPSTTAWKS-----LKPPHIHSALPFASRLFSDKIRVTFVEADGAKKEVTAAIGETFLEIAHNNDIELEGACGGELACSTCHCVFEPAVYATLPPITEEEEDMLDMAWGLTDTSRLGCQIKATPEMDGITVTIPDGSNNML 154
[Close]
BLAST of NO12G03710 vs. NCBI_GenBank
Match: XP_008903183.1 (hypothetical protein PPTG_10271 [Phytophthora parasitica INRA-310] >ETI50842.1 hypothetical protein F443_05670 [Phytophthora parasitica P1569] >ETK90743.1 hypothetical protein L915_05532 [Phytophthora parasitica] >ETL44156.1 hypothetical protein L916_05471 [Phytophthora parasitica] >ETL97328.1 hypothetical protein L917_05359 [Phytophthora parasitica] >ETM50479.1 hypothetical protein L914_05481 [Phytophthora parasitica] >ETN11376.1 hypothetical protein PPTG_10271 [Phytophthora parasitica INRA-310] >ETO79582.1 hypothetical protein F444_05722 [Phytophthora parasitica P1976] >ETP20627.1 hypothetical protein F441_05678 [Phytophthora parasitica CJ01A1] >ETP48560.1 hypothetical protein F442_05716 [Phytophthora parasitica P10297] >KUF79413.1 Adrenodoxin [Phytophthora nicotianae] >KUF98877.1 Adrenodoxin [Phytophthora nicotianae])

HSP 1 Score: 142.1 bits (357), Expect = 1.800e-30
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0 
Query:   74 GEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNML 172
            GE   VTA EG+ LL+VA END+ELEGACGGELACSTCH+VF   ++  LPE  EEEEDMLDLAWGLTDTSRLGCQI V+  +E   + IP+E +N++
Sbjct:   55 GEHTTVTAEEGEKLLDVAQENDLELEGACGGELACSTCHLVFEKRIFDNLPEVSEEEEDMLDLAWGLTDTSRLGCQIHVTKDMEGMTVRIPDEADNLM 152
The following BLAST results are available for this feature:
BLAST of NO12G03710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25673.11.400e-5675.692fe-2s iron-sulfur cluster binding domain-containi... [more]
XP_005852372.12.200e-3688.10ferredoxin, partial [Nannochloropsis gaditana CCMP... [more]
OQS04894.17.200e-3263.552Fe-2S ferredoxin [Thraustotheca clavata][more]
CBJ28611.11.600e-3164.04DNA polymerase III subunit delta\' [Ectocarpus sil... [more]
XP_009514430.11.600e-3166.33hypothetical protein PHYSODRAFT_308575 [Phytophtho... [more]
OWZ19766.11.600e-3167.352Fe-2S ferredoxin [Phytophthora megakarya][more]
POM69952.12.700e-3166.332Fe-2S ferredoxin [Phytophthora palmivora var. pal... [more]
GAX96833.16.100e-3167.352Fe-2S ferredoxin, putative [Pythium insidiosum][more]
XP_008862579.11.400e-3050.94hypothetical protein H310_01292 [Aphanomyces invad... [more]
XP_008903183.11.800e-3065.31hypothetical protein PPTG_10271 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010351NSK010351Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03710.1NO12G03710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592911gene_5548Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101185g2gene4841Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03710.1NO12G03710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03710 ID=NO12G03710|Name=NO12G03710|organism=Nannochloropsis oceanica|type=gene|length=1019bp
AAATGAGCGACGTTTGGGCAATTATCAGACGATGGCTTTTTCTTTGTAAT
ATTACAGTCCGGACAGGCAGTGCCAATGTCCATGCACTCGTCCGTGGCCA
TCCTGTGTAACTGTGCTTGTGTATGGTAGGAACGGGCATGGGCATATGTG
TTGTTGGACACTACGCGCCCTCTTTGTTCAAAGCCGTTGCCAGACTCGCC
CCCATTTGTTCGACGCAGCGATTGCACTACCGAGTCCAGGACCGCAGTGA
CTGGTTGATAATGACACATGCGCGGCGCTGCTAGCTCACTTATGTTGGCG
GTCACGTCCTCCGCTTTCTCTATCACTAGGTCAGAAACGCAAAATGTTGC
GCAGTACCGTTGCCAGCCTCCGCTGCCTCCCCACCGTCTCCTCCTCCCTC
CCGGCCATCGCCTCCGTCCTTCTCTCCTCCTCCCTTACCCACACCAGTCT
GACCGCCTGTAGCAGCAATACAAGTACAAGGAGAAGACAGCGGCAACTTC
ACTTCGCCTACCACAGCACGGCGCTGTGCCCGAAAGATATCAAGATGACC
TGGCATGTGGCCGGCGAGGAAATCCCTGTGACGGCCGCAGAAGGAAAGAG
CCTGTTGGAGGTCGCGCATGAAAACGACATTGAATTAGAGGGGGCCTGTG
GAGGAGAGCTAGCTTGCTCGACCTGTCACGTGGTGTTCACCCCGGAGCTG
TATGGGAAATTGCCGGAGAAGAAGGAGGAGGAGGAAGACATGCTGGACTT
GGCGTGGGGATTGACGGACACGTCGCGGTTGGGGTGTCAGATTAAAGTGA
GCCCCGTGCTGGAGAACGCCGTGATTACCATTCCTGAGGAGACGAATAAT
ATGCTGGGGGGCGAGGAAGGGGAAACCGCGAAGCCGGCAGGGGCTCCGGT
GGACCCCTGGGCCAAGTGAGGAGGAAGGAGAGAGGGAGGAGGGGAGGCAA
GTGGTGGAAAGAAATGGAGTAGGGTGAGGACAAGAAATCAAAGTACCGTC
GTTTTAAATGCGCGACCTA
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protein sequence of NO12G03710.1

>NO12G03710.1-protein ID=NO12G03710.1-protein|Name=NO12G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MLRSTVASLRCLPTVSSSLPAIASVLLSSSLTHTSLTACSSNTSTRRRQR
QLHFAYHSTALCPKDIKMTWHVAGEEIPVTAAEGKSLLEVAHENDIELEG
ACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQI
KVSPVLENAVITIPEETNNMLGGEEGETAKPAGAPVDPWAK*
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Synonyms
Publications