NO12G03710.1, NO12G03710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03710.1
Unique NameNO12G03710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1019
Alignment locationchr12:1025502..1026520 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1025502..1026520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03710.1 vs.
Match: EWM25673.1 (2fe-2s iron-sulfur cluster binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 1.400e-56
Identity = 109/144 (75.69%), Postives = 119/144 (82.64%), Query Frame = 0 
Query:   48 RQRQLHFAYHSTALCPKDIKMTWHVAGEEIPVTAAEGKSLLEVAHENDIELEGACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQIKVSPVLENAVITIPEETNNMLGGEEGETAKPAGAPVDPWAK 192
            R+R L   YH T    KD+ MTWHV GE I VTA EGK+LLEVAH+NDIELEGACGGELACSTCHVVFTPELY +LP KKEEEEDMLDLAWGLT+TSRLGCQIKV+P+LENAVITIPEETNNMLGGE+      AG   +PWAK
Sbjct:   81 RRRLLRRTYHGTVPRAKDVTMTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNMLGGEDEGKGGAAGGQGEPWAK 224
The following BLAST results are available for this feature:
BLAST of NO12G03710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25673.11.400e-5675.692fe-2s iron-sulfur cluster binding domain-containi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03710NO12G03710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03710.1NO12G03710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03710.1.cds1NO12G03710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03710.1 ID=NO12G03710.1|Name=NO12G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1019bp
AAATGAGCGACGTTTGGGCAATTATCAGACGATGGCTTTTTCTTTGTAAT
ATTACAGTCCGGACAGGCAGTGCCAATGTCCATGCACTCGTCCGTGGCCA
TCCTGTGTAACTGTGCTTGTGTATGGTAGGAACGGGCATGGGCATATGTG
TTGTTGGACACTACGCGCCCTCTTTGTTCAAAGCCGTTGCCAGACTCGCC
CCCATTTGTTCGACGCAGCGATTGCACTACCGAGTCCAGGACCGCAGTGA
CTGGTTGATAATGACACATGCGCGGCGCTGCTAGCTCACTTATGTTGGCG
GTCACGTCCTCCGCTTTCTCTATCACTAGGTCAGAAACGCAAAATGTTGC
GCAGTACCGTTGCCAGCCTCCGCTGCCTCCCCACCGTCTCCTCCTCCCTC
CCGGCCATCGCCTCCGTCCTTCTCTCCTCCTCCCTTACCCACACCAGTCT
GACCGCCTGTAGCAGCAATACAAGTACAAGGAGAAGACAGCGGCAACTTC
ACTTCGCCTACCACAGCACGGCGCTGTGCCCGAAAGATATCAAGATGACC
TGGCATGTGGCCGGCGAGGAAATCCCTGTGACGGCCGCAGAAGGAAAGAG
CCTGTTGGAGGTCGCGCATGAAAACGACATTGAATTAGAGGGGGCCTGTG
GAGGAGAGCTAGCTTGCTCGACCTGTCACGTGGTGTTCACCCCGGAGCTG
TATGGGAAATTGCCGGAGAAGAAGGAGGAGGAGGAAGACATGCTGGACTT
GGCGTGGGGATTGACGGACACGTCGCGGTTGGGGTGTCAGATTAAAGTGA
GCCCCGTGCTGGAGAACGCCGTGATTACCATTCCTGAGGAGACGAATAAT
ATGCTGGGGGGCGAGGAAGGGGAAACCGCGAAGCCGGCAGGGGCTCCGGT
GGACCCCTGGGCCAAGTGAGGAGGAAGGAGAGAGGGAGGAGGGGAGGCAA
GTGGTGGAAAGAAATGGAGTAGGGTGAGGACAAGAAATCAAAGTACCGTC
GTTTTAAATGCGCGACCTA
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protein sequence of NO12G03710.1

>NO12G03710.1-protein ID=NO12G03710.1-protein|Name=NO12G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MLRSTVASLRCLPTVSSSLPAIASVLLSSSLTHTSLTACSSNTSTRRRQR
QLHFAYHSTALCPKDIKMTWHVAGEEIPVTAAEGKSLLEVAHENDIELEG
ACGGELACSTCHVVFTPELYGKLPEKKEEEEDMLDLAWGLTDTSRLGCQI
KVSPVLENAVITIPEETNNMLGGEEGETAKPAGAPVDPWAK*
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mRNA from alignment at chr12:1025502..1026520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03710.1 ID=NO12G03710.1|Name=NO12G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1019bp|location=Sequence derived from alignment at chr12:1025502..1026520+ (Nannochloropsis oceanica)
AAATGAGCGACGTTTGGGCAATTATCAGACGATGGCTTTTTCTTTGTAAT
ATTACAGTCCGGACAGGCAGTGCCAATGTCCATGCACTCGTCCGTGGCCA
TCCTGTGTAACTGTGCTTGTGTATGGTAGGAACGGGCATGGGCATATGTG
TTGTTGGACACTACGCGCCCTCTTTGTTCAAAGCCGTTGCCAGACTCGCC
CCCATTTGTTCGACGCAGCGATTGCACTACCGAGTCCAGGACCGCAGTGA
CTGGTTGATAATGACACATGCGCGGCGCTGCTAGCTCACTTATGTTGGCG
GTCACGTCCTCCGCTTTCTCTATCACTAGGTCAGAAACGCAAAATGTTGC
GCAGTACCGTTGCCAGCCTCCGCTGCCTCCCCACCGTCTCCTCCTCCCTC
CCGGCCATCGCCTCCGTCCTTCTCTCCTCCTCCCTTACCCACACCAGTCT
GACCGCCTGTAGCAGCAATACAAGTACAAGGAGAAGACAGCGGCAACTTC
ACTTCGCCTACCACAGCACGGCGCTGTGCCCGAAAGATATCAAGATGACC
TGGCATGTGGCCGGCGAGGAAATCCCTGTGACGGCCGCAGAAGGAAAGAG
CCTGTTGGAGGTCGCGCATGAAAACGACATTGAATTAGAGGGGGCCTGTG
GAGGAGAGCTAGCTTGCTCGACCTGTCACGTGGTGTTCACCCCGGAGCTG
TATGGGAAATTGCCGGAGAAGAAGGAGGAGGAGGAAGACATGCTGGACTT
GGCGTGGGGATTGACGGACACGTCGCGGTTGGGGTGTCAGATTAAAGTGA
GCCCCGTGCTGGAGAACGCCGTGATTACCATTCCTGAGGAGACGAATAAT
ATGCTGGGGGGCGAGGAAGGGGAAACCGCGAAGCCGGCAGGGGCTCCGGT
GGACCCCTGGGCCAAGTGAGGAGGAAGGAGAGAGGGAGGAGGGGAGGCAA
GTGGTGGAAAGAAATGGAGTAGGGTGAGGACAAGAAATCAAAGTACCGTC
GTTTTAAATGCGCGACCTA
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Coding sequence (CDS) from alignment at chr12:1025502..1026520+

>NO12G03710.1 ID=NO12G03710.1|Name=NO12G03710.1|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr12:1025502..1026520+ (Nannochloropsis oceanica)
ATGTTGCGCAGTACCGTTGCCAGCCTCCGCTGCCTCCCCACCGTCTCCTC
CTCCCTCCCGGCCATCGCCTCCGTCCTTCTCTCCTCCTCCCTTACCCACA
CCAGTCTGACCGCCTGTAGCAGCAATACAAGTACAAGGAGAAGACAGCGG
CAACTTCACTTCGCCTACCACAGCACGGCGCTGTGCCCGAAAGATATCAA
GATGACCTGGCATGTGGCCGGCGAGGAAATCCCTGTGACGGCCGCAGAAG
GAAAGAGCCTGTTGGAGGTCGCGCATGAAAACGACATTGAATTAGAGGGG
GCCTGTGGAGGAGAGCTAGCTTGCTCGACCTGTCACGTGGTGTTCACCCC
GGAGCTGTATGGGAAATTGCCGGAGAAGAAGGAGGAGGAGGAAGACATGC
TGGACTTGGCGTGGGGATTGACGGACACGTCGCGGTTGGGGTGTCAGATT
AAAGTGAGCCCCGTGCTGGAGAACGCCGTGATTACCATTCCTGAGGAGAC
GAATAATATGCTGGGGGGCGAGGAAGGGGAAACCGCGAAGCCGGCAGGGG
CTCCGGTGGACCCCTGGGCCAAGTGA
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Synonyms
Publications