NO12G03580, NO12G03580 (gene) Nannochloropsis oceanica

Overview
NameNO12G03580
Unique NameNO12G03580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2433
Alignment locationchr12:977498..979930 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:977498..979930 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008942ENTH_VHS
IPR013809ENTH
Homology
BLAST of NO12G03580 vs. NCBI_GenBank
Match: CBJ48363.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.8 bits (312), Expect = 1.000e-24
Identity = 69/182 (37.91%), Postives = 98/182 (53.85%), Query Frame = 0
Query:  216 RHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRP------------FVTAYADYVTFRALHFGPGYPEV 386
            R R  +  RE K+ +SSE+EG ++KATRPD   +KPKHLE L+  T + P + + +LP++RKLW+KM + + R++ KALYILHRFAA G+ E A NL+  +  L    DSR                   + + YFD   +     P            F+  YAD+V  R   FGPG+ E+
Sbjct:  218 RQRASSAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTVEMPKEFNVYLPVVRKLWSKMADKEWRVSAKALYILHRFAADGSIEHASNLKESVAVLRTHHDSR-------------------RKVNYFDMDTICDVKAPSWSGEDVAPMAEFLQGYADFVLRRTTQFGPGFAEL 380          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: OEU15634.1 (hypothetical protein FRACYDRAFT_170332, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 121.7 bits (304), Expect = 8.700e-24
Identity = 71/164 (43.29%), Postives = 93/164 (56.71%), Query Frame = 0
Query:  222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEV 386
            L RE+K   SSELE  ++KATRPD   +K KH E L+ +TYQ   + D +  +LRKLWAKM E D R T+KALYILHRF+A G+P+ AP L+AR+ EL R  D +                   K ++  D    S + R F+  YA YV  RA  FG  + E+
Sbjct:   29 LFREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQISGRYDIYDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPK-----------RKGKFFSSKLLQAGDDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEI 181          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: XP_002181259.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47182.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 120.2 bits (300), Expect = 2.500e-23
Identity = 69/167 (41.32%), Postives = 95/167 (56.89%), Query Frame = 0
Query:  222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEVGRE 389
            + RE+K   SSELE  ++KATRPD   +K KH+E L+ +TYQ   + D +  +LRKLW KM E D R T+K+LYILHRF+A GAPE A  L+ARL EL R  D +                   K +   ++   + + R F++ YA YV  RA  FG  + E+ +E
Sbjct:  245 IYREVKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGVTYQISPRYDIYDAVLRKLWGKMAEKDWRTTIKSLYILHRFSADGAPEHAAALKARLRELRRTRDPK-----------RKDKYFNSKQLLAGESNPENIKFRAFMSRYAHYVLLRAQCFGGLFDEISQE 400          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: GAX19912.1 (hypothetical protein FisN_1Lh618 [Fistulifera solaris])

HSP 1 Score: 115.2 bits (287), Expect = 8.100e-22
Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = 0
Query:  222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEV 386
            L RE+K   SSELE  ++KAT+PD   +K KH+E L+ +TYQ   + D +  +LRKLW KM E D R T+KA+YI+HRF+A GAPE A  L+ARL EL R  D +                   K +   DT   + + R F++ Y+ YV  R   +G  + E+
Sbjct:  217 LYREVKGLTSSELEQVMLKATKPDDTPVKGKHVERLVGVTYQIGPKFDIYDAVLRKLWGKMVERDWRTTMKAVYIMHRFSADGAPEHAAALKARLRELRRTRDPK-----------RKDKFFNTKQLLAGDTTPENVKFRAFLSRYSHYVLLRTQCYGGMFDEI 369          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: GAX28591.1 (hypothetical protein FisN_1Hh618 [Fistulifera solaris])

HSP 1 Score: 114.8 bits (286), Expect = 1.100e-21
Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = 0
Query:  222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEV 386
            L RE+K   SSELE  ++KAT+PD   +K KH+E L+ +TYQ   + D +  +LRKLW KM E D R T+KA+YI+HRF+A GAPE A  L+ARL EL R  D +                   K +   DT   + + R F++ Y+ YV  R   +G  + E+
Sbjct:  216 LYREVKGFTSSELEQVMLKATKPDDTPVKGKHVERLVGVTYQIGPKFDIYDAVLRKLWGKMVEKDWRTTMKAVYIMHRFSADGAPEHAAALKARLRELRRTRDPK-----------RKDKFFNTKQLLAGDTTPENVKFRAFLSRYSHYVLLRTQCYGGMFDEI 368          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: EJK63810.1 (hypothetical protein THAOC_15514 [Thalassiosira oceanica])

HSP 1 Score: 104.8 bits (260), Expect = 1.100e-18
Identity = 63/172 (36.63%), Postives = 89/172 (51.74%), Query Frame = 0
Query:  222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAM--------STEGRPFVTAYADYVTFRALHFGPGYPEV 386
            L RE+K   SSELE  ++K+TRPD   +K KH+E L+ +TYQ   + D +  +LRKLW KM E D R  LK++Y+LHRF+  G PE    L+ RL  L +  D +                      RYFD+  +        ++  R F++ YA YV  RA  FG  + E+
Sbjct:  215 LYREVKGLTSSELEQVMLKSTRPDETPVKTKHVERLVGVTYQISGKYDIYDAVLRKLWNKMAERDIRTKLKSVYVLHRFSVDGGPEHQEALKQRLRALRKTKDPKRSGGGGRGG-----------STRYFDSKVLIGPDNDPDNSGYRAFLSRYAHYVLTRAQTFGGVFNEI 375          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: CBN75765.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 2.000e-12
Identity = 64/202 (31.68%), Postives = 91/202 (45.05%), Query Frame = 0
Query:  214 GERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLL-AITYQTPAQLD------------PFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMST---EGRPF---VTAYADYVTFRALHFGPGYPEVGREVGAAVERE 397
            G  H+G  ++RELK ++SS+LE  ++KATRPD    K KH+  LL A  +  P  ++            P+   L KLW +M E D R   KA+Y+LHR A     E     ++ L E+ R  D                        RYF    +S    +GRPF   + AYA++V  R   F P   E+     AA++ E
Sbjct:  283 GVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDK-------------------GTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGEL-----AAIDAE 460          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: XP_002288953.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94389.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.9 bits (185), Expect = 5.500e-10
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0
Query:  222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFA 302
            + RE+K   SSELE  ++KATRPD   +K KH+E L+ +TYQ   + D +  +LRKLW KM E D R  LK++  L R+A
Sbjct:  243 IYREVKGLTSSELEQVMLKATRPDETPVKTKHVERLVGVTYQISGKYDIYDAVLRKLWNKMAEKDIRTKLKSVAFLSRYA 322          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: XP_005854255.1 (c2h2 zinc-finger protein, partial [Nannochloropsis gaditana CCMP526] >EKU22106.1 c2h2 zinc-finger protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.8 bits (164), Expect = 1.500e-7
Identity = 53/195 (27.18%), Postives = 79/195 (40.51%), Query Frame = 0
Query:  213 RGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAIT------YQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMST----------------EGRPFVTAYADYVTFRALHFGPGYPEV 386
            +G   +G+ + RELK   S + E  ++KATRPD  +  P+ +  +L  T          A  +P+   LRKLWAKM E D R   KALY+ H       P+     +    +++R+                          RYFD GA+S                 + R F+  Y+ YV  RA  F   + E+
Sbjct:  232 QGMASKGKKMTRELKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATATFHRDEDLTAGSNPYRVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVFAKMSRE-------------------GCKKSRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEM 407          
BLAST of NO12G03580 vs. NCBI_GenBank
Match: EWM29224.1 (Epsin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 67.4 bits (163), Expect = 1.900e-7
Identity = 53/195 (27.18%), Postives = 79/195 (40.51%), Query Frame = 0
Query:  213 RGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAIT------YQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMST----------------EGRPFVTAYADYVTFRALHFGPGYPEV 386
            +G   +G+ + RELK   S + E  ++KATRPD  +  P+ +  +L  T          A  +P+   LRKLWAKM E D R   KALY+ H       P+     +    +++R+                          RYFD GA+S                 + R F+  Y+ YV  RA  F   + E+
Sbjct:  232 QGMASKGKKMTRELKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATATFHRDEDLTAGSNPYRVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVCAKMSRE-------------------GCKKSRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEM 407          
The following BLAST results are available for this feature:
BLAST of NO12G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
CBJ48363.11.000e-2437.91conserved unknown protein [Ectocarpus siliculosus][more]
OEU15634.18.700e-2443.29hypothetical protein FRACYDRAFT_170332, partial [F... [more]
XP_002181259.12.500e-2341.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX19912.18.100e-2240.24hypothetical protein FisN_1Lh618 [Fistulifera sola... [more]
GAX28591.11.100e-2140.24hypothetical protein FisN_1Hh618 [Fistulifera sola... [more]
EJK63810.11.100e-1836.63hypothetical protein THAOC_15514 [Thalassiosira oc... [more]
CBN75765.12.000e-1231.68conserved unknown protein [Ectocarpus siliculosus][more]
XP_002288953.15.500e-1047.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_005854255.11.500e-727.18c2h2 zinc-finger protein, partial [Nannochloropsis... [more]
EWM29224.11.900e-727.18Epsin-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010325NSK010325Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03580.1NO12G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592850gene_5532Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03580.1NO12G03580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03580 ID=NO12G03580|Name=NO12G03580|organism=Nannochloropsis oceanica|type=gene|length=2433bp
ATGGAAGGATCAAGACTACGAAGGCAACAGGCCCTGGCCCGGCTGCCCGT
TCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAGTGATGATGGGGAGCA
GCACCCTCCTTCCTACGGCCACTGCTACGGCCACTCCTTGTAGCAAACAA
Ggttcgtctggatggaacaactacattattcccatcagtgcgaacgcatt
cgtgccgtcgtctttgtaccactgaactctctcttttcccctttctcgca
aacacagATGCGTGTGCCTCCTCATACTCCTTTTTCCTATCGACCATTCG
TGGGGGTGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAGGAGAAGGAA
TAACGGGGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCCTCCACTTCA
GCGCGGTTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAGTCGACGCAA
ACAACGGTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGGAGGACGACG
ACGAGGAAACAGATTCGCTGCCTCACGATAGACACATCAGCACTGCTGGA
GCTTCGATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCACATCTCGTCG
CCCGACAGGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCA
CGAGCGGCAAAAGACGGCGTAAAGCTCCCTCACCATCACCACTCTCCTCA
GCGATTCCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGGAAGAGGTGA
GAGACAgtcacctcgcaaaaggcatggcgctaccactccctccccctcct
ctcctcctttcccttccgcccaaactaccccccgctggcgacactcttct
tcctccctctcctcctcctcctcctccccccttcctcccctccctcctcg
tctttctcctttccctttcgtctcggcagCAGGGGACGTACCCTCCTGCG
GGAGCTCAAGGCCGCGCTGTCCTCCGAATTGGAAGGGGAGATAGTCAAAG
CCACAAGACCCGACACCCGTCAAATTAAACCAAAGCATTTGGAGCCCCTC
CTCGCCATCACGTATCAAACCCCCGCCCAGCTCGATCCGTTCCTCCCCAT
CCTTCGCAAGCTATGGGCGAAGATGCGAGAGGGCGACAGTCGAATCACCC
TGAAGGCCCTGTACATTCTTCATCGCTTTGCTGCTAGTGGTGCGCCTGAA
CAAGCTCCCAACCTGCAAGCCCGCCTGGGAGAGTTAACCCGACAGATGGA
CTCCCGGGCTGCTTCCTCCTCCTTCTCCTCCTCTTCCTCCATCTCCTCCC
CCTTCTCCTCCCCCAAACACATACGgtaagcttttcttcgatgatttgcc
agggccagagggaaaggcttcttctcttggcctcggtgctctcccaccaa
ggtaagcccttttccacctcctcaccctccctccctccctccttctccca
gATACTTCGACACTGGTGCCATGTCGACGGAAGGCCGACCCTTCGTGACC
GCCTATGCCGACTACGTCACCTTCCGCGCCTTGCATTTTGGCCCCGGCTA
CCCGGAAGTAGGGCGGGAAGTCGGGGCAGCCGTGGAAAGGGAGGAAGTAG
GGGATGACACAGAAGACGCAGTTGGAGCAGCTGCTGCAGCGGCAGGAGCA
GCAGCAGCAGCGGCGGCGATGGCGGAGGGTAGGGTGGCCCCGCCACCAGC
CGTGTGGAGCGCGGGAGATTTTGACCTGTTTCTGCGGCAGGTGGAGGACG
TATGGGAGAGGGCATGGAGAGTACGGCTCGGAACAAAGGAGGAGGTGAGT
GAATTGACCTGTGCGTGTGTGGAAGCGGTGTACTTTGACCTGCAGCAGGT
GTTGGAGTGCCTTGCGGGGCATTTGAAGGTGGTCTTGAGGAAAGTTGGGA
GCGAGGAGGGGGTGGGGAGGGTGACAAAGGCGGTGGAGGTGTATGAGAGG
GGGGTGGAGGTGTTGAACGAGTATGTGGCAAGGCACAAGGACTTGGTGGA
GGGGCAGGGGGTGGTGATGGTGCCCATGGCGGTGGTGGCTTTGGGGACGC
CGCCCCGAGTGCCGTCTTTAGAGATGGTCGGACCCGGGGAGGAGGAGGAG
GAGGGAAGGGAAGAGGAGGAGGGAAGGGAGGGAGAGGGGAAGGGGAAGGA
GCTGGGAGAGAAGACGGGAATGGAGAAGAAAGATTGGGATTTGAATGTAA
AGAAGAAGAACAGAACAACAAAAAAGGTGGAGAGAGAGGAGGAGGAGGAG
GAGGAGAAGGGTGAGGAGGAGGAGGCTGTCAAAGCTGTTAATAATAAGAA
AAAGAACAAGAATATGTCAAATTCTGGGAAGAAGAAGAAGAAGAAGAGCT
GGAAGCTCTCCACTGCCGAGCGGCCAGCGGTAAGAGTGGGGCCGACGAAG
GGGAAAAAACGGAAGAAGCAGAAGATGGAGTAG
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protein sequence of NO12G03580.1

>NO12G03580.1-protein ID=NO12G03580.1-protein|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=676bp
MEGSRLRRQQALARLPVLLLLIPAFLLLVMMGSSTLLPTATATATPCSKQ
DACASSYSFFLSTIRGGAARAHDRGAGGGEGITGKAGHASVSLPSSTSAR
FIRNSVGGNRPSRRKQRFLDEQHEEEQEEDDDEETDSLPHDRHISTAGAS
IGRGGKGAVAFTSRRPTGSTSSTSSTSTSTSTSGKRRRKAPSPSPLSSAI
PSKKRGEETMGGRGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIK
PKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRF
AASGAPEQAPNLQARLGELTRQMDSRAASSSFSSSSSISSPFSSPKHIRY
FDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEVGREVGAAVEREEVGD
DTEDAVGAAAAAAGAAAAAAAMAEGRVAPPPAVWSAGDFDLFLRQVEDVW
ERAWRVRLGTKEEVSELTCACVEAVYFDLQQVLECLAGHLKVVLRKVGSE
EGVGRVTKAVEVYERGVEVLNEYVARHKDLVEGQGVVMVPMAVVALGTPP
RVPSLEMVGPGEEEEEGREEEEGREGEGKGKELGEKTGMEKKDWDLNVKK
KNRTTKKVEREEEEEEEKGEEEEAVKAVNNKKKNKNMSNSGKKKKKKSWK
LSTAERPAVRVGPTKGKKRKKQKME*
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Synonyms
Publications