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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:977498..979930 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03580.1 vs.
Match: OEU15634.1 (hypothetical protein FRACYDRAFT_170332, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 121.7 bits (304), Expect = 8.700e-24 Identity = 81/196 (41.33%), Postives = 105/196 (53.57%), Query Frame = 0
Query: 191 PSPSPLS-SAIPSKKRGEETMGGRGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRAASSSFSSSSSISSPFSSPKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEV 386
P P + +A S ET G L RE+K SSELE ++KATRPD +K KH E L+ +TYQ + D + +LRKLWAKM E D R T+KALYILHRF+A G+P+ AP L+AR+ EL R D + FSS K ++ D S + R F+ YA YV RA FG + E+
Sbjct: 2 PDPGSVKEAAFKSLSVARETTSGLSSN-----LFREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQISGRYDIYDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKFFSS-----------KLLQAGDDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEI 181
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03580.1 ID=NO12G03580.1|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp ATGGAAGGATCAAGACTACGAAGGCAACAGGCCCTGGCCCGGCTGCCCGT TCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAGTGATGATGGGGAGCA GCACCCTCCTTCCTACGGCCACTGCTACGGCCACTCCTTGTAGCAAACAA GATGCGTGTGCCTCCTCATACTCCTTTTTCCTATCGACCATTCGTGGGGG TGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAGGAGAAGGAATAACGG GGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCCTCCACTTCAGCGCGG TTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAGTCGACGCAAACAACG GTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGGAGGACGACGACGAGG AAACAGATTCGCTGCCTCACGATAGACACATCAGCACTGCTGGAGCTTCG ATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCACATCTCGTCGCCCGAC AGGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCACGAGCG GCAAAAGACGGCGTAAAGCTCCCTCACCATCACCACTCTCCTCAGCGATT CCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGGAAGAGGTGAGAGACA CAGGGGACGTACCCTCCTGCGGGAGCTCAAGGCCGCGCTGTCCTCCGAAT TGGAAGGGGAGATAGTCAAAGCCACAAGACCCGACACCCGTCAAATTAAA CCAAAGCATTTGGAGCCCCTCCTCGCCATCACGTATCAAACCCCCGCCCA GCTCGATCCGTTCCTCCCCATCCTTCGCAAGCTATGGGCGAAGATGCGAG AGGGCGACAGTCGAATCACCCTGAAGGCCCTGTACATTCTTCATCGCTTT GCTGCTAGTGGTGCGCCTGAACAAGCTCCCAACCTGCAAGCCCGCCTGGG AGAGTTAACCCGACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCT CCTCTTCCTCCATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGATAC TTCGACACTGGTGCCATGTCGACGGAAGGCCGACCCTTCGTGACCGCCTA TGCCGACTACGTCACCTTCCGCGCCTTGCATTTTGGCCCCGGCTACCCGG AAGTAGGGCGGGAAGTCGGGGCAGCCGTGGAAAGGGAGGAAGTAGGGGAT GACACAGAAGACGCAGTTGGAGCAGCTGCTGCAGCGGCAGGAGCAGCAGC AGCAGCGGCGGCGATGGCGGAGGGTAGGGTGGCCCCGCCACCAGCCGTGT GGAGCGCGGGAGATTTTGACCTGTTTCTGCGGCAGGTGGAGGACGTATGG GAGAGGGCATGGAGAGTACGGCTCGGAACAAAGGAGGAGGTGAGTGAATT GACCTGTGCGTGTGTGGAAGCGGTGTACTTTGACCTGCAGCAGGTGTTGG AGTGCCTTGCGGGGCATTTGAAGGTGGTCTTGAGGAAAGTTGGGAGCGAG GAGGGGGTGGGGAGGGTGACAAAGGCGGTGGAGGTGTATGAGAGGGGGGT GGAGGTGTTGAACGAGTATGTGGCAAGGCACAAGGACTTGGTGGAGGGGC AGGGGGTGGTGATGGTGCCCATGGCGGTGGTGGCTTTGGGGACGCCGCCC CGAGTGCCGTCTTTAGAGATGGTCGGACCCGGGGAGGAGGAGGAGGAGGG AAGGGAAGAGGAGGAGGGAAGGGAGGGAGAGGGGAAGGGGAAGGAGCTGG GAGAGAAGACGGGAATGGAGAAGAAAGATTGGGATTTGAATGTAAAGAAG AAGAACAGAACAACAAAAAAGGTGGAGAGAGAGGAGGAGGAGGAGGAGGA GAAGGGTGAGGAGGAGGAGGCTGTCAAAGCTGTTAATAATAAGAAAAAGA ACAAGAATATGTCAAATTCTGGGAAGAAGAAGAAGAAGAAGAGCTGGAAG CTCTCCACTGCCGAGCGGCCAGCGGTAAGAGTGGGGCCGACGAAGGGGAA AAAACGGAAGAAGCAGAAGATGGAGTAG back to topprotein sequence of NO12G03580.1 >NO12G03580.1-protein ID=NO12G03580.1-protein|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=676bp MEGSRLRRQQALARLPVLLLLIPAFLLLVMMGSSTLLPTATATATPCSKQ DACASSYSFFLSTIRGGAARAHDRGAGGGEGITGKAGHASVSLPSSTSAR FIRNSVGGNRPSRRKQRFLDEQHEEEQEEDDDEETDSLPHDRHISTAGAS IGRGGKGAVAFTSRRPTGSTSSTSSTSTSTSTSGKRRRKAPSPSPLSSAI PSKKRGEETMGGRGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIK PKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRF AASGAPEQAPNLQARLGELTRQMDSRAASSSFSSSSSISSPFSSPKHIRY FDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEVGREVGAAVEREEVGD DTEDAVGAAAAAAGAAAAAAAMAEGRVAPPPAVWSAGDFDLFLRQVEDVW ERAWRVRLGTKEEVSELTCACVEAVYFDLQQVLECLAGHLKVVLRKVGSE EGVGRVTKAVEVYERGVEVLNEYVARHKDLVEGQGVVMVPMAVVALGTPP RVPSLEMVGPGEEEEEGREEEEGREGEGKGKELGEKTGMEKKDWDLNVKK KNRTTKKVEREEEEEEEKGEEEEAVKAVNNKKKNKNMSNSGKKKKKKSWK LSTAERPAVRVGPTKGKKRKKQKME* back to topmRNA from alignment at chr12:977498..979930+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03580.1 ID=NO12G03580.1|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr12:977498..979930+ (Nannochloropsis oceanica) ATGGAAGGATCAAGACTACGAAGGCAACAGGCCCTGGCCCGGCTGCCCGT
TCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAGTGATGATGGGGAGCA
GCACCCTCCTTCCTACGGCCACTGCTACGGCCACTCCTTGTAGCAAACAA
GGTTCGTCTGGATGGAACAACTACATTATTCCCATCAGTGCGAACGCATT
CGTGCCGTCGTCTTTGTACCACTGAACTCTCTCTTTTCCCCTTTCTCGCA
AACACAGATGCGTGTGCCTCCTCATACTCCTTTTTCCTATCGACCATTCG
TGGGGGTGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAGGAGAAGGAA
TAACGGGGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCCTCCACTTCA
GCGCGGTTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAGTCGACGCAA
ACAACGGTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGGAGGACGACG
ACGAGGAAACAGATTCGCTGCCTCACGATAGACACATCAGCACTGCTGGA
GCTTCGATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCACATCTCGTCG
CCCGACAGGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCA
CGAGCGGCAAAAGACGGCGTAAAGCTCCCTCACCATCACCACTCTCCTCA
GCGATTCCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGGAAGAGGTGA
GAGACAGTCACCTCGCAAAAGGCATGGCGCTACCACTCCCTCCCCCTCCT
CTCCTCCTTTCCCTTCCGCCCAAACTACCCCCCGCTGGCGACACTCTTCT
TCCTCCCTCTCCTCCTCCTCCTCCTCCCCCCTTCCTCCCCTCCCTCCTCG
TCTTTCTCCTTTCCCTTTCGTCTCGGCAGCAGGGGACGTACCCTCCTGCG
GGAGCTCAAGGCCGCGCTGTCCTCCGAATTGGAAGGGGAGATAGTCAAAG
CCACAAGACCCGACACCCGTCAAATTAAACCAAAGCATTTGGAGCCCCTC
CTCGCCATCACGTATCAAACCCCCGCCCAGCTCGATCCGTTCCTCCCCAT
CCTTCGCAAGCTATGGGCGAAGATGCGAGAGGGCGACAGTCGAATCACCC
TGAAGGCCCTGTACATTCTTCATCGCTTTGCTGCTAGTGGTGCGCCTGAA
CAAGCTCCCAACCTGCAAGCCCGCCTGGGAGAGTTAACCCGACAGATGGA
CTCCCGGGCTGCTTCCTCCTCCTTCTCCTCCTCTTCCTCCATCTCCTCCC
CCTTCTCCTCCCCCAAACACATACGGTAAGCTTTTCTTCGATGATTTGCC
AGGGCCAGAGGGAAAGGCTTCTTCTCTTGGCCTCGGTGCTCTCCCACCAA
GGTAAGCCCTTTTCCACCTCCTCACCCTCCCTCCCTCCCTCCTTCTCCCA
GATACTTCGACACTGGTGCCATGTCGACGGAAGGCCGACCCTTCGTGACC
GCCTATGCCGACTACGTCACCTTCCGCGCCTTGCATTTTGGCCCCGGCTA
CCCGGAAGTAGGGCGGGAAGTCGGGGCAGCCGTGGAAAGGGAGGAAGTAG
GGGATGACACAGAAGACGCAGTTGGAGCAGCTGCTGCAGCGGCAGGAGCA
GCAGCAGCAGCGGCGGCGATGGCGGAGGGTAGGGTGGCCCCGCCACCAGC
CGTGTGGAGCGCGGGAGATTTTGACCTGTTTCTGCGGCAGGTGGAGGACG
TATGGGAGAGGGCATGGAGAGTACGGCTCGGAACAAAGGAGGAGGTGAGT
GAATTGACCTGTGCGTGTGTGGAAGCGGTGTACTTTGACCTGCAGCAGGT
GTTGGAGTGCCTTGCGGGGCATTTGAAGGTGGTCTTGAGGAAAGTTGGGA
GCGAGGAGGGGGTGGGGAGGGTGACAAAGGCGGTGGAGGTGTATGAGAGG
GGGGTGGAGGTGTTGAACGAGTATGTGGCAAGGCACAAGGACTTGGTGGA
GGGGCAGGGGGTGGTGATGGTGCCCATGGCGGTGGTGGCTTTGGGGACGC
CGCCCCGAGTGCCGTCTTTAGAGATGGTCGGACCCGGGGAGGAGGAGGAG
GAGGGAAGGGAAGAGGAGGAGGGAAGGGAGGGAGAGGGGAAGGGGAAGGA
GCTGGGAGAGAAGACGGGAATGGAGAAGAAAGATTGGGATTTGAATGTAA
AGAAGAAGAACAGAACAACAAAAAAGGTGGAGAGAGAGGAGGAGGAGGAG
GAGGAGAAGGGTGAGGAGGAGGAGGCTGTCAAAGCTGTTAATAATAAGAA
AAAGAACAAGAATATGTCAAATTCTGGGAAGAAGAAGAAGAAGAAGAGCT
GGAAGCTCTCCACTGCCGAGCGGCCAGCGGTAAGAGTGGGGCCGACGAAG
GGGAAAAAACGGAAGAAGCAGAAGATGGAGTAG back to topCoding sequence (CDS) from alignment at chr12:977498..979930+ >NO12G03580.1 ID=NO12G03580.1|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at chr12:977498..979930+ (Nannochloropsis oceanica) ATGGAAGGATCAAGACTACGAAGGCAACAGGCCCTGGCCCGGCTGCCCGT TCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAGTGATGATGGGGAGCA GCACCCTCCTTCCTACGGCCACTGCTACGGCCACTCCTTGTAGCAAACAA GATGCGTGTGCCTCCTCATACTCCTTTTTCCTATCGACCATTCGTGGGGG TGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAGGAGAAGGAATAACGG GGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCCTCCACTTCAGCGCGG TTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAGTCGACGCAAACAACG GTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGGAGGACGACGACGAGG AAACAGATTCGCTGCCTCACGATAGACACATCAGCACTGCTGGAGCTTCG ATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCACATCTCGTCGCCCGAC AGGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCACGAGCG GCAAAAGACGGCGTAAAGCTCCCTCACCATCACCACTCTCCTCAGCGATT CCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGGAAGAGGTGAGAGACA CAGGGGACGTACCCTCCTGCGGGAGCTCAAGGCCGCGCTGTCCTCCGAAT TGGAAGGGGAGATAGTCAAAGCCACAAGACCCGACACCCGTCAAATTAAA CCAAAGCATTTGGAGCCCCTCCTCGCCATCACGTATCAAACCCCCGCCCA GCTCGATCCGTTCCTCCCCATCCTTCGCAAGCTATGGGCGAAGATGCGAG AGGGCGACAGTCGAATCACCCTGAAGGCCCTGTACATTCTTCATCGCTTT GCTGCTAGTGGTGCGCCTGAACAAGCTCCCAACCTGCAAGCCCGCCTGGG AGAGTTAACCCGACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCT CCTCTTCCTCCATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGATAC TTCGACACTGGTGCCATGTCGACGGAAGGCCGACCCTTCGTGACCGCCTA TGCCGACTACGTCACCTTCCGCGCCTTGCATTTTGGCCCCGGCTACCCGG AAGTAGGGCGGGAAGTCGGGGCAGCCGTGGAAAGGGAGGAAGTAGGGGAT GACACAGAAGACGCAGTTGGAGCAGCTGCTGCAGCGGCAGGAGCAGCAGC AGCAGCGGCGGCGATGGCGGAGGGTAGGGTGGCCCCGCCACCAGCCGTGT GGAGCGCGGGAGATTTTGACCTGTTTCTGCGGCAGGTGGAGGACGTATGG GAGAGGGCATGGAGAGTACGGCTCGGAACAAAGGAGGAGGTGAGTGAATT GACCTGTGCGTGTGTGGAAGCGGTGTACTTTGACCTGCAGCAGGTGTTGG AGTGCCTTGCGGGGCATTTGAAGGTGGTCTTGAGGAAAGTTGGGAGCGAG GAGGGGGTGGGGAGGGTGACAAAGGCGGTGGAGGTGTATGAGAGGGGGGT GGAGGTGTTGAACGAGTATGTGGCAAGGCACAAGGACTTGGTGGAGGGGC AGGGGGTGGTGATGGTGCCCATGGCGGTGGTGGCTTTGGGGACGCCGCCC CGAGTGCCGTCTTTAGAGATGGTCGGACCCGGGGAGGAGGAGGAGGAGGG AAGGGAAGAGGAGGAGGGAAGGGAGGGAGAGGGGAAGGGGAAGGAGCTGG GAGAGAAGACGGGAATGGAGAAGAAAGATTGGGATTTGAATGTAAAGAAG AAGAACAGAACAACAAAAAAGGTGGAGAGAGAGGAGGAGGAGGAGGAGGA GAAGGGTGAGGAGGAGGAGGCTGTCAAAGCTGTTAATAATAAGAAAAAGA ACAAGAATATGTCAAATTCTGGGAAGAAGAAGAAGAAGAAGAGCTGGAAG CTCTCCACTGCCGAGCGGCCAGCGGTAAGAGTGGGGCCGACGAAGGGGAA AAAACGGAAGAAGCAGAAGATGGAGTAG back to top
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