NO12G03580.1, NO12G03580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03580.1
Unique NameNO12G03580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2028
Alignment locationchr12:977498..979930 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:977498..979930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G03580.1 vs.
Match: OEU15634.1 (hypothetical protein FRACYDRAFT_170332, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 121.7 bits (304), Expect = 8.700e-24
Identity = 81/196 (41.33%), Postives = 105/196 (53.57%), Query Frame = 0
Query:  191 PSPSPLS-SAIPSKKRGEETMGGRGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRAASSSFSSSSSISSPFSSPKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEV 386
            P P  +  +A  S     ET  G         L RE+K   SSELE  ++KATRPD   +K KH E L+ +TYQ   + D +  +LRKLWAKM E D R T+KALYILHRF+A G+P+ AP L+AR+ EL R  D +     FSS           K ++  D    S + R F+  YA YV  RA  FG  + E+
Sbjct:    2 PDPGSVKEAAFKSLSVARETTSGLSSN-----LFREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQISGRYDIYDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKFFSS-----------KLLQAGDDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEI 181          
The following BLAST results are available for this feature:
BLAST of NO12G03580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEU15634.18.700e-2441.33hypothetical protein FRACYDRAFT_170332, partial [F... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03580NO12G03580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03580.1NO12G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03580.1.cds1NO12G03580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03580.1.cds2NO12G03580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03580.1.cds3NO12G03580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03580.1.cds4NO12G03580.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03580.1 ID=NO12G03580.1|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp
ATGGAAGGATCAAGACTACGAAGGCAACAGGCCCTGGCCCGGCTGCCCGT
TCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAGTGATGATGGGGAGCA
GCACCCTCCTTCCTACGGCCACTGCTACGGCCACTCCTTGTAGCAAACAA
GATGCGTGTGCCTCCTCATACTCCTTTTTCCTATCGACCATTCGTGGGGG
TGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAGGAGAAGGAATAACGG
GGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCCTCCACTTCAGCGCGG
TTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAGTCGACGCAAACAACG
GTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGGAGGACGACGACGAGG
AAACAGATTCGCTGCCTCACGATAGACACATCAGCACTGCTGGAGCTTCG
ATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCACATCTCGTCGCCCGAC
AGGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCACGAGCG
GCAAAAGACGGCGTAAAGCTCCCTCACCATCACCACTCTCCTCAGCGATT
CCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGGAAGAGGTGAGAGACA
CAGGGGACGTACCCTCCTGCGGGAGCTCAAGGCCGCGCTGTCCTCCGAAT
TGGAAGGGGAGATAGTCAAAGCCACAAGACCCGACACCCGTCAAATTAAA
CCAAAGCATTTGGAGCCCCTCCTCGCCATCACGTATCAAACCCCCGCCCA
GCTCGATCCGTTCCTCCCCATCCTTCGCAAGCTATGGGCGAAGATGCGAG
AGGGCGACAGTCGAATCACCCTGAAGGCCCTGTACATTCTTCATCGCTTT
GCTGCTAGTGGTGCGCCTGAACAAGCTCCCAACCTGCAAGCCCGCCTGGG
AGAGTTAACCCGACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCT
CCTCTTCCTCCATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGATAC
TTCGACACTGGTGCCATGTCGACGGAAGGCCGACCCTTCGTGACCGCCTA
TGCCGACTACGTCACCTTCCGCGCCTTGCATTTTGGCCCCGGCTACCCGG
AAGTAGGGCGGGAAGTCGGGGCAGCCGTGGAAAGGGAGGAAGTAGGGGAT
GACACAGAAGACGCAGTTGGAGCAGCTGCTGCAGCGGCAGGAGCAGCAGC
AGCAGCGGCGGCGATGGCGGAGGGTAGGGTGGCCCCGCCACCAGCCGTGT
GGAGCGCGGGAGATTTTGACCTGTTTCTGCGGCAGGTGGAGGACGTATGG
GAGAGGGCATGGAGAGTACGGCTCGGAACAAAGGAGGAGGTGAGTGAATT
GACCTGTGCGTGTGTGGAAGCGGTGTACTTTGACCTGCAGCAGGTGTTGG
AGTGCCTTGCGGGGCATTTGAAGGTGGTCTTGAGGAAAGTTGGGAGCGAG
GAGGGGGTGGGGAGGGTGACAAAGGCGGTGGAGGTGTATGAGAGGGGGGT
GGAGGTGTTGAACGAGTATGTGGCAAGGCACAAGGACTTGGTGGAGGGGC
AGGGGGTGGTGATGGTGCCCATGGCGGTGGTGGCTTTGGGGACGCCGCCC
CGAGTGCCGTCTTTAGAGATGGTCGGACCCGGGGAGGAGGAGGAGGAGGG
AAGGGAAGAGGAGGAGGGAAGGGAGGGAGAGGGGAAGGGGAAGGAGCTGG
GAGAGAAGACGGGAATGGAGAAGAAAGATTGGGATTTGAATGTAAAGAAG
AAGAACAGAACAACAAAAAAGGTGGAGAGAGAGGAGGAGGAGGAGGAGGA
GAAGGGTGAGGAGGAGGAGGCTGTCAAAGCTGTTAATAATAAGAAAAAGA
ACAAGAATATGTCAAATTCTGGGAAGAAGAAGAAGAAGAAGAGCTGGAAG
CTCTCCACTGCCGAGCGGCCAGCGGTAAGAGTGGGGCCGACGAAGGGGAA
AAAACGGAAGAAGCAGAAGATGGAGTAG
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protein sequence of NO12G03580.1

>NO12G03580.1-protein ID=NO12G03580.1-protein|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=676bp
MEGSRLRRQQALARLPVLLLLIPAFLLLVMMGSSTLLPTATATATPCSKQ
DACASSYSFFLSTIRGGAARAHDRGAGGGEGITGKAGHASVSLPSSTSAR
FIRNSVGGNRPSRRKQRFLDEQHEEEQEEDDDEETDSLPHDRHISTAGAS
IGRGGKGAVAFTSRRPTGSTSSTSSTSTSTSTSGKRRRKAPSPSPLSSAI
PSKKRGEETMGGRGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIK
PKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRF
AASGAPEQAPNLQARLGELTRQMDSRAASSSFSSSSSISSPFSSPKHIRY
FDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEVGREVGAAVEREEVGD
DTEDAVGAAAAAAGAAAAAAAMAEGRVAPPPAVWSAGDFDLFLRQVEDVW
ERAWRVRLGTKEEVSELTCACVEAVYFDLQQVLECLAGHLKVVLRKVGSE
EGVGRVTKAVEVYERGVEVLNEYVARHKDLVEGQGVVMVPMAVVALGTPP
RVPSLEMVGPGEEEEEGREEEEGREGEGKGKELGEKTGMEKKDWDLNVKK
KNRTTKKVEREEEEEEEKGEEEEAVKAVNNKKKNKNMSNSGKKKKKKSWK
LSTAERPAVRVGPTKGKKRKKQKME*
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mRNA from alignment at chr12:977498..979930+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03580.1 ID=NO12G03580.1|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr12:977498..979930+ (Nannochloropsis oceanica)
ATGGAAGGATCAAGACTACGAAGGCAACAGGCCCTGGCCCGGCTGCCCGT TCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAGTGATGATGGGGAGCA GCACCCTCCTTCCTACGGCCACTGCTACGGCCACTCCTTGTAGCAAACAA GGTTCGTCTGGATGGAACAACTACATTATTCCCATCAGTGCGAACGCATT CGTGCCGTCGTCTTTGTACCACTGAACTCTCTCTTTTCCCCTTTCTCGCA AACACAGATGCGTGTGCCTCCTCATACTCCTTTTTCCTATCGACCATTCG TGGGGGTGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAGGAGAAGGAA TAACGGGGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCCTCCACTTCA GCGCGGTTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAGTCGACGCAA ACAACGGTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGGAGGACGACG ACGAGGAAACAGATTCGCTGCCTCACGATAGACACATCAGCACTGCTGGA GCTTCGATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCACATCTCGTCG CCCGACAGGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCA CGAGCGGCAAAAGACGGCGTAAAGCTCCCTCACCATCACCACTCTCCTCA GCGATTCCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGGAAGAGGTGA GAGACAGTCACCTCGCAAAAGGCATGGCGCTACCACTCCCTCCCCCTCCT CTCCTCCTTTCCCTTCCGCCCAAACTACCCCCCGCTGGCGACACTCTTCT TCCTCCCTCTCCTCCTCCTCCTCCTCCCCCCTTCCTCCCCTCCCTCCTCG TCTTTCTCCTTTCCCTTTCGTCTCGGCAGCAGGGGACGTACCCTCCTGCG GGAGCTCAAGGCCGCGCTGTCCTCCGAATTGGAAGGGGAGATAGTCAAAG CCACAAGACCCGACACCCGTCAAATTAAACCAAAGCATTTGGAGCCCCTC CTCGCCATCACGTATCAAACCCCCGCCCAGCTCGATCCGTTCCTCCCCAT CCTTCGCAAGCTATGGGCGAAGATGCGAGAGGGCGACAGTCGAATCACCC TGAAGGCCCTGTACATTCTTCATCGCTTTGCTGCTAGTGGTGCGCCTGAA CAAGCTCCCAACCTGCAAGCCCGCCTGGGAGAGTTAACCCGACAGATGGA CTCCCGGGCTGCTTCCTCCTCCTTCTCCTCCTCTTCCTCCATCTCCTCCC CCTTCTCCTCCCCCAAACACATACGGTAAGCTTTTCTTCGATGATTTGCC AGGGCCAGAGGGAAAGGCTTCTTCTCTTGGCCTCGGTGCTCTCCCACCAA GGTAAGCCCTTTTCCACCTCCTCACCCTCCCTCCCTCCCTCCTTCTCCCA GATACTTCGACACTGGTGCCATGTCGACGGAAGGCCGACCCTTCGTGACC GCCTATGCCGACTACGTCACCTTCCGCGCCTTGCATTTTGGCCCCGGCTA CCCGGAAGTAGGGCGGGAAGTCGGGGCAGCCGTGGAAAGGGAGGAAGTAG GGGATGACACAGAAGACGCAGTTGGAGCAGCTGCTGCAGCGGCAGGAGCA GCAGCAGCAGCGGCGGCGATGGCGGAGGGTAGGGTGGCCCCGCCACCAGC CGTGTGGAGCGCGGGAGATTTTGACCTGTTTCTGCGGCAGGTGGAGGACG TATGGGAGAGGGCATGGAGAGTACGGCTCGGAACAAAGGAGGAGGTGAGT GAATTGACCTGTGCGTGTGTGGAAGCGGTGTACTTTGACCTGCAGCAGGT GTTGGAGTGCCTTGCGGGGCATTTGAAGGTGGTCTTGAGGAAAGTTGGGA GCGAGGAGGGGGTGGGGAGGGTGACAAAGGCGGTGGAGGTGTATGAGAGG GGGGTGGAGGTGTTGAACGAGTATGTGGCAAGGCACAAGGACTTGGTGGA GGGGCAGGGGGTGGTGATGGTGCCCATGGCGGTGGTGGCTTTGGGGACGC CGCCCCGAGTGCCGTCTTTAGAGATGGTCGGACCCGGGGAGGAGGAGGAG GAGGGAAGGGAAGAGGAGGAGGGAAGGGAGGGAGAGGGGAAGGGGAAGGA GCTGGGAGAGAAGACGGGAATGGAGAAGAAAGATTGGGATTTGAATGTAA AGAAGAAGAACAGAACAACAAAAAAGGTGGAGAGAGAGGAGGAGGAGGAG GAGGAGAAGGGTGAGGAGGAGGAGGCTGTCAAAGCTGTTAATAATAAGAA AAAGAACAAGAATATGTCAAATTCTGGGAAGAAGAAGAAGAAGAAGAGCT GGAAGCTCTCCACTGCCGAGCGGCCAGCGGTAAGAGTGGGGCCGACGAAG GGGAAAAAACGGAAGAAGCAGAAGATGGAGTAG
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Coding sequence (CDS) from alignment at chr12:977498..979930+

>NO12G03580.1 ID=NO12G03580.1|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at chr12:977498..979930+ (Nannochloropsis oceanica)
ATGGAAGGATCAAGACTACGAAGGCAACAGGCCCTGGCCCGGCTGCCCGT
TCTGCTCCTCCTCATCCCGGCCTTCCTCCTCCTAGTGATGATGGGGAGCA
GCACCCTCCTTCCTACGGCCACTGCTACGGCCACTCCTTGTAGCAAACAA
GATGCGTGTGCCTCCTCATACTCCTTTTTCCTATCGACCATTCGTGGGGG
TGCAGCACGAGCCCATGATAGGGGAGCAGGAGGAGGAGAAGGAATAACGG
GGAAAGCGGGGCATGCGTCTGTGTCACTGCCCTCCTCCACTTCAGCGCGG
TTCATTCGGAATAGTGTGGGTGGCAACAGGCCTAGTCGACGCAAACAACG
GTTCCTGGATGAGCAGCACGAGGAGGAGCAGGAGGAGGACGACGACGAGG
AAACAGATTCGCTGCCTCACGATAGACACATCAGCACTGCTGGAGCTTCG
ATAGGTCGTGGTGGTAAAGGTGCAGTCGCGTTCACATCTCGTCGCCCGAC
AGGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACCAGCACGAGCG
GCAAAAGACGGCGTAAAGCTCCCTCACCATCACCACTCTCCTCAGCGATT
CCCTCCAAGAAAAGAGGAGAGGAAACAATGGGAGGAAGAGGTGAGAGACA
CAGGGGACGTACCCTCCTGCGGGAGCTCAAGGCCGCGCTGTCCTCCGAAT
TGGAAGGGGAGATAGTCAAAGCCACAAGACCCGACACCCGTCAAATTAAA
CCAAAGCATTTGGAGCCCCTCCTCGCCATCACGTATCAAACCCCCGCCCA
GCTCGATCCGTTCCTCCCCATCCTTCGCAAGCTATGGGCGAAGATGCGAG
AGGGCGACAGTCGAATCACCCTGAAGGCCCTGTACATTCTTCATCGCTTT
GCTGCTAGTGGTGCGCCTGAACAAGCTCCCAACCTGCAAGCCCGCCTGGG
AGAGTTAACCCGACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCT
CCTCTTCCTCCATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGATAC
TTCGACACTGGTGCCATGTCGACGGAAGGCCGACCCTTCGTGACCGCCTA
TGCCGACTACGTCACCTTCCGCGCCTTGCATTTTGGCCCCGGCTACCCGG
AAGTAGGGCGGGAAGTCGGGGCAGCCGTGGAAAGGGAGGAAGTAGGGGAT
GACACAGAAGACGCAGTTGGAGCAGCTGCTGCAGCGGCAGGAGCAGCAGC
AGCAGCGGCGGCGATGGCGGAGGGTAGGGTGGCCCCGCCACCAGCCGTGT
GGAGCGCGGGAGATTTTGACCTGTTTCTGCGGCAGGTGGAGGACGTATGG
GAGAGGGCATGGAGAGTACGGCTCGGAACAAAGGAGGAGGTGAGTGAATT
GACCTGTGCGTGTGTGGAAGCGGTGTACTTTGACCTGCAGCAGGTGTTGG
AGTGCCTTGCGGGGCATTTGAAGGTGGTCTTGAGGAAAGTTGGGAGCGAG
GAGGGGGTGGGGAGGGTGACAAAGGCGGTGGAGGTGTATGAGAGGGGGGT
GGAGGTGTTGAACGAGTATGTGGCAAGGCACAAGGACTTGGTGGAGGGGC
AGGGGGTGGTGATGGTGCCCATGGCGGTGGTGGCTTTGGGGACGCCGCCC
CGAGTGCCGTCTTTAGAGATGGTCGGACCCGGGGAGGAGGAGGAGGAGGG
AAGGGAAGAGGAGGAGGGAAGGGAGGGAGAGGGGAAGGGGAAGGAGCTGG
GAGAGAAGACGGGAATGGAGAAGAAAGATTGGGATTTGAATGTAAAGAAG
AAGAACAGAACAACAAAAAAGGTGGAGAGAGAGGAGGAGGAGGAGGAGGA
GAAGGGTGAGGAGGAGGAGGCTGTCAAAGCTGTTAATAATAAGAAAAAGA
ACAAGAATATGTCAAATTCTGGGAAGAAGAAGAAGAAGAAGAGCTGGAAG
CTCTCCACTGCCGAGCGGCCAGCGGTAAGAGTGGGGCCGACGAAGGGGAA
AAAACGGAAGAAGCAGAAGATGGAGTAG
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Synonyms
Publications