NO12G03520, NO12G03520 (gene) Nannochloropsis oceanica

Overview
NameNO12G03520
Unique NameNO12G03520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2844
Alignment locationchr12:962751..965594 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:962751..965594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G03520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010316NSK010316Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03520.1NO12G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671560gene_5527Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03520.1NO12G03520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03520 ID=NO12G03520|Name=NO12G03520|organism=Nannochloropsis oceanica|type=gene|length=2844bp
GCTCTCATTTCACACCTCGCTACGTCTCATAGCAGCAGCGCGCGTGTATG
CATGTCGTCTCTGTCATTCTGGTACCTCTCCCAATTTCTGATTCTCTTTT
ATGGCTTGTACAAGATTCCCCCCCTTATGgtaggtggttgtccctccctt
tagcctccctcctctcctctcctctcctctactttccaggccttcaaagg
ccactgccatcgcccgcacccttcctccttgaccactaacaccatctctg
tatcacacacgcacaccgacagGATCAGACGGCGCACATTTAGACGAGTG
TCAGCGTGCAACACCTGCGTCTCCAGCTTGAGCTCTCTCGCCGACTCGCC
CCCCGAACGGGTTCTTTTTCCCAGCTCACGCACAGTACGATGCAAGCTCA
TGATAATGTCGCCGCGACCAATGCACCTCGCACGCTAGGCACAGAGAAGT
AAAATTACATACGTACATAAACGTGTCATGGCGCATCAGCCGTCGCATTT
GTTGGGGGCCCTCCATGAAGACACTCTGCGGCGTCTCCTCGAGGTGCATG
CTGCAGCCCAGTCTCCTCTACCACCTCCACCTCCGCCCCCCTTACACCTT
CAACCCCCCTCCTCACGCCCTTCATCATCGAAACGTCATGCCAGCACCAG
CAACAGTCGCAGCAGATTACGAGGCGAACACTTTTCCTCGCCTTCACCGT
CCTCTCCCGCCCCTACATTTTCCTCCACCAACCTCATCGAAGTGGACCAA
GAGCGCCGCGATTTAGAGGCTCGTACTTTGTCCTTGCGACGGGCCTTGCT
GCGGACACATTTTCATATTCATGAAGTGCAGGACGAGGAGCCACTACAAC
CACTTCCACTACCACCGCCACCACCCCAACCGCCAAGAGCAAGCACTCTC
GTCCCTCCCCCCCTTCCTACTTCCTCGCCACCTCTCTTCGATGACGACGT
GGAAGGCCCTTATTCCGACGCATCTTACTCCGCCATTGCAGCCGCAGCAG
CTGCTGCTGTCGGGTGGGGATGGGCGCAGAAAAAGCAACGTGCTGACAGG
CACTGCGTTAGGGTTTTGGAGGGGCGCTCTCTGACCCGATGGTTGAAGTG
GCTGCTGCACCGACGCTTGGCCAAAGAAAGAGAAAACGAGATTGGAGAGG
CAATGACTTTCTACAAACAAGGACAGGCGCTGGCTCGCTTTCGTCGACGG
GCGAGTAATTCCCGCGTGCAGCACATGGCAATGCTCCGGGTGGTCTTGAT
GGAAGGAGGAAGGGAGGGAGAAAGGGAGGGAGGAAGGGAGGGAGAGCAAG
AGCAGCCTTTACCCTCCTTTTCCTCTTCCGTTTTTAAATACCATCAACTA
CAACAGGAGATTTCCAATTCTTGTTTTCTCTTTGCTTCTCTCACCACCAC
CTACACCCGCGCTGCCCTCCGCCTCCTCCTCACCAGGGGCTTCCACCGCT
TGCACCGGCATCACGTCACCTCAACCCACATTCGCTCCCTCAAGCGCCAC
GCCATCCAAGATGCCCTCCTTCCTTCTCTCCTTCGCAAGGGGCTTCAGGC
TCTACGACGCAACAACAAGCAAGCCCGTCGGCGTCTCTTACATAAAAAAG
CAGCAGACATGAGGAAGTACCAGCAGCTGCAGCAGCAGCAGCGGGCACTA
CAGCAGTGGTGCGCGTGGAGAAATAGAAGAAGGAACCGGAAGCTATTAAT
GAAGAAGGGAGAACTGTGGTGGGATTTGAGATTGAAAGAGGGAGGGTTGC
GAAGGTGGGGGGGAGGGTGGTGTGAGGCGAGGAGGGAGGGAAGGAGGCTG
GTGAGAGGGATGGATGCGTGGCATGAGCAGCGGCTGCAGCAAAGGGGGGT
AAAGACGTGGCTTTGTATGTTTGTAGTCCGTCGGGAGGAGAGGAGGATGT
TGAAGAGGGGGAAGGAATGGAGGGAGGGAGGGAGGATGGCTTGGGGAAAG
TGGTGCAGGGTGTTGGGGAGGATGAGGGGGAGGAGGAGTGGGGAGAAGAG
GTTGGCGCGGGCGGCGGGACGGATTTGTGAGAGGAGAAGAATGAAACGAG
CGCTGGTGGTGAGATGGAGGGAGAGGTGGATGCTTGGGGTGAAAGAGAAG
GAGAGGGCGAGGGGGAGGAAGGGGGAGGGGCTGTGGAGGGGGAGGGCTGG
AGGGAGGGCGGTGGAGGCATTGAGAGCCTGGGCAGCTCGAAGGATGCTTA
GACAGGCTCTTGAGAAGGCACAGAGAGGGGGGGAGGAGGAGTTGCAAGCA
GGATCAGCACTGCCCTGGCGAGTGATGCAACTGTTGAAAAAATGTGAGGG
ATGGAAGGTGATAGTGGAGGAGGAGAAAGGGTACCGGGCGCTCTTGGTTA
GAGGGGAGGAGCATTTTGAGAGCCGTGGGGAAGAAAGAGGGATACTTGCA
TGGGTGGCTTATGTGGTCGCTCTCAAGATGCAAAGGGCGGCTTTGAAGAG
GGTGGAGCGCTCAATGGATCCTCGGTGTCATCGCCAGCAGGAGCAGCAGG
AGGAACAGCAGCAGGAGGAGCAGCAGCTGTCTGCACTCTCCCCACGCTTA
CCATCCGCATCATTCCTTCCCTCTCTCCCTCCCCCCACCTCCTCCACGCC
GCCTACACCCGCCTCGCTCACCGAAGGCTCCATCTCGCATTGGACAGATG
GAAGTTTCATTCCCACCAGCAGGGGCGCCTCTCCTCCTCCCTCGTGCGTG
CCGGCTGTCATTACTTACTCACGCAATGGCAGGGCCTGCGACGGGCGTTA
CAGCAACAAGAGCGGAGAGAAACGGCAGCACGTATGGCTATTGAAAAGGT
GGTGGCTCCCCACCAGAGGAGAAGGGGATTTAGAGTATGGTTGA
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protein sequence of NO12G03520.1

>NO12G03520.1-protein ID=NO12G03520.1-protein|Name=NO12G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=789bp
MAHQPSHLLGALHEDTLRRLLEVHAAAQSPLPPPPPPPLHLQPPSSRPSS
SKRHASTSNSRSRLRGEHFSSPSPSSPAPTFSSTNLIEVDQERRDLEART
LSLRRALLRTHFHIHEVQDEEPLQPLPLPPPPPQPPRASTLVPPPLPTSS
PPLFDDDVEGPYSDASYSAIAAAAAAAVGWGWAQKKQRADRHCVRVLEGR
SLTRWLKWLLHRRLAKERENEIGEAMTFYKQGQALARFRRRASNSRVQHM
AMLRVVLMEGGREGEREGGREGEQEQPLPSFSSSVFKYHQLQQEISNSCF
LFASLTTTYTRAALRLLLTRGFHRLHRHHVTSTHIRSLKRHAIQDALLPS
LLRKGLQALRRNNKQARRRLLHKKAADMRKYQQLQQQQRALQQWCAWRNR
RRNRKLLMKKGELWWDLRLKEGGLRRWGGGWCEARREGRRLVRGMDAWHE
QRLQQRGVKTWLCMFVVRREERRMLKRGKEWREGGRMAWGKWCRVLGRMR
GRRSGEKRLARAAGRICERRRMKRALVVRWRERWMLGVKEKERARGRKGE
GLWRGRAGGRAVEALRAWAARRMLRQALEKAQRGGEEELQAGSALPWRVM
QLLKKCEGWKVIVEEEKGYRALLVRGEEHFESRGEERGILAWVAYVVALK
MQRAALKRVERSMDPRCHRQQEQQEEQQQEEQQLSALSPRLPSASFLPSL
PPPTSSTPPTPASLTEGSISHWTDGSFIPTSRGASPPPSCVPAVITYSRN
GRACDGRYSNKSGEKRQHVWLLKRWWLPTRGEGDLEYG*
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Synonyms
Publications