NO12G03460, NO12G03460 (gene) Nannochloropsis oceanica

Overview
NameNO12G03460
Unique NameNO12G03460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr12:947519..948289 -

Link to JBrowse

Properties
Property NameValue
DescriptionNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:947519..948289 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO12G03460 vs. NCBI_GenBank
Match: EWM25700.1 (hypothetical protein Naga_100222g8 [Nannochloropsis gaditana])

HSP 1 Score: 154.5 bits (389), Expect = 2.100e-34
Identity = 77/117 (65.81%), Postives = 86/117 (73.50%), Query Frame = 0
Query:    1 MFSRFGTSLLRQSTRRVP--AAVRPTTGRRFLGSGGHGXXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHGXXXXXXXXXXAHYKETEFDAPSELEEAEDEE 116
            M  R  T+  RQ  RR P  A  RPTTGRRFLGSGG G   HFHVSE HQK ATVMTTVCWVW+LWRCYEDGAVVLGL+HPWDGHG          AH+K+ +FD PSELEEAE+++
Sbjct:   29 MLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGG-GHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHG--DHGHHGGGAHFKDVDFDGPSELEEAEEDD 142          
BLAST of NO12G03460 vs. NCBI_GenBank
Match: GAX92184.1 (Hypothetical protein PINS_000115 [Pythium insidiosum])

HSP 1 Score: 82.8 bits (203), Expect = 7.800e-13
Identity = 38/80 (47.50%), Postives = 46/80 (57.50%), Query Frame = 0
Query:   13 STRRVPAAVRPTTGRRFLGSGGHG--------XXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHG 85
            S RR  A     +GRRF+G GGH            HFHVS  H+ +A    T+ W+WI WR  +DG VVLGL+HPWD HG
Sbjct:    5 SMRRAVARSTAVSGRRFMGGGGHSHGHAKDYPFGMHFHVSPVHKNLALAYGTMLWLWIFWRAKQDGKVVLGLEHPWDHHG 84          
BLAST of NO12G03460 vs. NCBI_GenBank
Match: XP_024576257.1 (hypothetical protein PHALS_10116 [Plasmopara halstedii] >CEG39888.1 hypothetical protein PHALS_10116 [Plasmopara halstedii])

HSP 1 Score: 66.2 bits (160), Expect = 7.600e-8
Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 0
Query:   24 TTGRRFLGSG-GHG----XXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHGXXXXXXXXXXAHYKETEFDAPSE 108
            ++GRR + S  GH        HFHVS  H+ +A    T+ W+W+ WR   DG  VLGL+HPWD HG           H+ ET  +  S+
Sbjct:   14 SSGRRAVSSSHGHSHNYPHGMHFHVSAVHKNLALAYGTMLWLWVFWRAKHDGLAVLGLEHPWDHHG-----------HHDETHAEGASK 91          
BLAST of NO12G03460 vs. NCBI_GenBank
Match: OQS04379.1 (hypothetical protein THRCLA_20903 [Thraustotheca clavata])

HSP 1 Score: 65.9 bits (159), Expect = 9.900e-8
Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 0
Query:    1 MFSRFGTSLLRQSTRRVPAAVRPTTGRRFLGSGGHGXXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPW 81
            M SR    LLR S  R  A+          G G +    HFHVS  H+ +AT   T+ W+W+ +R  EDGAVVLG +HPW
Sbjct:    3 MLSRVSKPLLRLSHVRSMASHH--------GHGTYPHGMHFHVSSVHKNLATAFGTLTWLWVFYRAKEDGAVVLGFEHPW 74          
BLAST of NO12G03460 vs. NCBI_GenBank
Match: XP_009526209.1 (hypothetical protein PHYSODRAFT_351118 [Phytophthora sojae] >EGZ17151.1 hypothetical protein PHYSODRAFT_351118 [Phytophthora sojae])

HSP 1 Score: 64.7 bits (156), Expect = 2.200e-7
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0
Query:   15 RRVPAAVRPTTGRRFLGSG-------GHGXXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWD 82
            RR+ AA    +GRR + S         HG   HFHVS  H+ +A    T+ W+W+ WR  +DG VVLGL+HPWD
Sbjct:    9 RRMAAA----SGRRAMSSAHXXXXXXPHG--MHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGRVVLGLEHPWD 76          
BLAST of NO12G03460 vs. NCBI_GenBank
Match: POM66343.1 (Hypothetical protein PHPALM_17807 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 63.2 bits (152), Expect = 6.400e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 0
Query:   15 RRVPAAVRPTTGRRFLGSGGHGXXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWD-GHG 85
            RR+ A+ R              XX HFHVS  H+ +A    T+ W+W+ WR  +DG  VLG +HPWD GHG
Sbjct:    9 RRLAASGRRAMSSXXXXXXXXXXXMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGLAVLGFEHPWDHGHG 79          
The following BLAST results are available for this feature:
BLAST of NO12G03460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM25700.12.100e-3465.81hypothetical protein Naga_100222g8 [Nannochloropsi... [more]
GAX92184.17.800e-1347.50Hypothetical protein PINS_000115 [Pythium insidios... [more]
XP_024576257.17.600e-838.20hypothetical protein PHALS_10116 [Plasmopara halst... [more]
OQS04379.19.900e-842.50hypothetical protein THRCLA_20903 [Thraustotheca c... [more]
XP_009526209.12.200e-744.59hypothetical protein PHYSODRAFT_351118 [Phytophtho... [more]
POM66343.16.400e-742.25Hypothetical protein PHPALM_17807 [Phytophthora pa... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010309NSK010309Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03460.1NO12G03460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639932gene_5519Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100222g8gene4817Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03460.1NO12G03460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03460 ID=NO12G03460|Name=NO12G03460|organism=Nannochloropsis oceanica|type=gene|length=771bp
ATGTTCAGCCGCTTTGGCACCAGCTTGCTACGGCAAAGCACCAGGAGGGT
GCCCGCTGCGGTCCGTCCTACCACTGgtaagaaccacccttccccctccc
ccctccttttctccaatcgtctgcctcctggtgattgtgtttaccctatg
ctcaactgcaagctatcactcgcttgaagatgatagtatggggcctgtgc
atgctggctttcccgtatgttgcacctcttgcgcccctaggtctaattca
acgcatctcctgtccaacgttcaccttcacctaccataacaccatagagc
aagagaactatatacatacatatatttatttatttaacctctagtcccaa
agaaattccgtctgctttatatagcccactttgcccacccctggaccata
gagagccccgtcatattattcttttccttcttactgtcgcacccacatgt
atcgagtcagtcacaccacctcttcctccatccacatacacagGCCGTCG
CTTCCTCGGCAGCGGCGGACACGGCCACGGCAATCATTTCCATGTTTCGG
AGACGCATCAAAAAGTAGCCACGGTCATGACAACCGTGTGTTGGGTATGG
ATCTTATGGAGGTGCTATGAGGACGGAGCTGTAGTGTTGGGGTTGAAGCA
CCCGTGGGACGGACATGGAGGGCACGGGGATCACGGGCACGGTGGAGGAG
CGCATTATAAGGAGACGGAGTTTGATGCGCCGTCGGAGTTGGAGGAGGCA
GAGGATGAGGAGGAGCATTAA
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protein sequence of NO12G03460.1

>NO12G03460.1-protein ID=NO12G03460.1-protein|Name=NO12G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MFSRFGTSLLRQSTRRVPAAVRPTTGRRFLGSGGHGHGNHFHVSETHQKV
ATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHGGHGDHGHGGGAHYKET
EFDAPSELEEAEDEEEH*
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Synonyms
Publications