NO12G03460.1, NO12G03460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03460.1
Unique NameNO12G03460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length354
Alignment locationchr12:947519..948289 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:947519..948289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G03460.1 vs.
Match: EWM25700.1 (hypothetical protein Naga_100222g8 [Nannochloropsis gaditana])

HSP 1 Score: 175.3 bits (443), Expect = 1.200e-40
Identity = 85/117 (72.65%), Postives = 95/117 (81.20%), Query Frame = 0
Query:    1 MFSRFGTSLLRQSTRRVP--AAVRPTTGRRFLGSGGHGHGNHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHGGHGDHGHGGGAHYKETEFDAPSELEEAEDEE 116
            M  R  T+  RQ  RR P  A  RPTTGRRFLGSGG GHG+HFHVSE HQK ATVMTTVCWVW+LWRCYEDGAVVLGL+HPWDGHG HG   HGGGAH+K+ +FD PSELEEAE+++
Sbjct:   29 MLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGG-GHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGH--HGGGAHFKDVDFDGPSELEEAEEDD 142          
The following BLAST results are available for this feature:
BLAST of NO12G03460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25700.11.200e-4072.65hypothetical protein Naga_100222g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03460NO12G03460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03460.1NO12G03460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03460.1.cds1NO12G03460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03460.1.cds2NO12G03460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03460.1 ID=NO12G03460.1|Name=NO12G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
ATGTTCAGCCGCTTTGGCACCAGCTTGCTACGGCAAAGCACCAGGAGGGT
GCCCGCTGCGGTCCGTCCTACCACTGGCCGTCGCTTCCTCGGCAGCGGCG
GACACGGCCACGGCAATCATTTCCATGTTTCGGAGACGCATCAAAAAGTA
GCCACGGTCATGACAACCGTGTGTTGGGTATGGATCTTATGGAGGTGCTA
TGAGGACGGAGCTGTAGTGTTGGGGTTGAAGCACCCGTGGGACGGACATG
GAGGGCACGGGGATCACGGGCACGGTGGAGGAGCGCATTATAAGGAGACG
GAGTTTGATGCGCCGTCGGAGTTGGAGGAGGCAGAGGATGAGGAGGAGCA
TTAA
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protein sequence of NO12G03460.1

>NO12G03460.1-protein ID=NO12G03460.1-protein|Name=NO12G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MFSRFGTSLLRQSTRRVPAAVRPTTGRRFLGSGGHGHGNHFHVSETHQKV
ATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHGGHGDHGHGGGAHYKET
EFDAPSELEEAEDEEEH*
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mRNA from alignment at chr12:947519..948289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03460.1 ID=NO12G03460.1|Name=NO12G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=771bp|location=Sequence derived from alignment at chr12:947519..948289- (Nannochloropsis oceanica)
ATGTTCAGCCGCTTTGGCACCAGCTTGCTACGGCAAAGCACCAGGAGGGT GCCCGCTGCGGTCCGTCCTACCACTGGTAAGAACCACCCTTCCCCCTCCC CCCTCCTTTTCTCCAATCGTCTGCCTCCTGGTGATTGTGTTTACCCTATG CTCAACTGCAAGCTATCACTCGCTTGAAGATGATAGTATGGGGCCTGTGC ATGCTGGCTTTCCCGTATGTTGCACCTCTTGCGCCCCTAGGTCTAATTCA ACGCATCTCCTGTCCAACGTTCACCTTCACCTACCATAACACCATAGAGC AAGAGAACTATATACATACATATATTTATTTATTTAACCTCTAGTCCCAA AGAAATTCCGTCTGCTTTATATAGCCCACTTTGCCCACCCCTGGACCATA GAGAGCCCCGTCATATTATTCTTTTCCTTCTTACTGTCGCACCCACATGT ATCGAGTCAGTCACACCACCTCTTCCTCCATCCACATACACAGGCCGTCG CTTCCTCGGCAGCGGCGGACACGGCCACGGCAATCATTTCCATGTTTCGG AGACGCATCAAAAAGTAGCCACGGTCATGACAACCGTGTGTTGGGTATGG ATCTTATGGAGGTGCTATGAGGACGGAGCTGTAGTGTTGGGGTTGAAGCA CCCGTGGGACGGACATGGAGGGCACGGGGATCACGGGCACGGTGGAGGAG CGCATTATAAGGAGACGGAGTTTGATGCGCCGTCGGAGTTGGAGGAGGCA GAGGATGAGGAGGAGCATTAA
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Coding sequence (CDS) from alignment at chr12:947519..948289-

>NO12G03460.1 ID=NO12G03460.1|Name=NO12G03460.1|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at chr12:947519..948289- (Nannochloropsis oceanica)
ATGTTCAGCCGCTTTGGCACCAGCTTGCTACGGCAAAGCACCAGGAGGGT
GCCCGCTGCGGTCCGTCCTACCACTGGCCGTCGCTTCCTCGGCAGCGGCG
GACACGGCCACGGCAATCATTTCCATGTTTCGGAGACGCATCAAAAAGTA
GCCACGGTCATGACAACCGTGTGTTGGGTATGGATCTTATGGAGGTGCTA
TGAGGACGGAGCTGTAGTGTTGGGGTTGAAGCACCCGTGGGACGGACATG
GAGGGCACGGGGATCACGGGCACGGTGGAGGAGCGCATTATAAGGAGACG
GAGTTTGATGCGCCGTCGGAGTTGGAGGAGGCAGAGGATGAGGAGGAGCA
TTAA
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Synonyms
Publications