NO12G03050, NO12G03050 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G03050
Unique Name	NO12G03050
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2046
Alignment location	chr12:838474..840519 -

Link to JBrowse

Properties


Property Name	Value
Description	Dnaj heat shock n-terminal domain-containing protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:838474..840519 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-rel_dom
IPR036869	J_dom_sf
IPR001623	DnaJ_domain

Homology

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: XP_005854869.1 (hypothetical protein NGA_2058800, partial [Nannochloropsis gaditana CCMP526] >EKU21490.1 hypothetical protein NGA_2058800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 154.1 bits (388), Expect = 9.500e-34
Identity = 88/194 (45.36%), Postives = 111/194 (57.22%), Query Frame = 0

Query:    1 MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGSXXXXXRR-IELKTSAGVRVKPPSSYV---PXXXXXXXXXXXXXXXXXXXASRPAPPSSTPLTPQRIASPSNGPAHG 191
            MARPWCFY VQGEEGES +EPN F LP   + G  +L+HFL AFPL  +Q   DRVYHARFKVKD + G+ WQDV D Q  LP +QGA+H K+LRLD  P+P +RLRRKPL  + GG      R+ +   T++  R    SS+V   P                   A RP   SS+ ++ Q +    +  A G
Sbjct:    4 MARPWCFYFVQGEEGESPEEPNVFALP---SNGAASLKHFLGAFPL-TQQKGGDRVYHARFKVKDDLFGYVWQDVVDPQDTLPVYQGAIHVKVLRLDKPPRPTTRLRRKPLGTLGGGRPAASMRQDVGRGTASTARNTTSSSHVATPPRRPDVSTASSGVAATAVPSAVRPPTSSSSGISTQTVEQGRSVKAPG 193

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: EWM25733.1 (dnaj heat shock n-terminal domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 154.1 bits (388), Expect = 9.500e-34
Identity = 88/194 (45.36%), Postives = 111/194 (57.22%), Query Frame = 0

Query:    1 MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGSXXXXXRR-IELKTSAGVRVKPPSSYV---PXXXXXXXXXXXXXXXXXXXASRPAPPSSTPLTPQRIASPSNGPAHG 191
            MARPWCFY VQGEEGES +EPN F LP   + G  +L+HFL AFPL  +Q   DRVYHARFKVKD + G+ WQDV D Q  LP +QGA+H K+LRLD  P+P +RLRRKPL  + GG      R+ +   T++  R    SS+V   P                   A RP   SS+ ++ Q +    +  A G
Sbjct:    1 MARPWCFYFVQGEEGESPEEPNVFALP---SNGAASLKHFLGAFPL-TQQKGGDRVYHARFKVKDDLFGYVWQDVVDPQDTLPVYQGAIHVKVLRLDKPPRPTTRLRRKPLGTLGGGRPAASMRQDVGRGTASTARNTTSSSHVATPPRRPDVSTASSGVAATAVPSAVRPPTSSSSGISTQTVEQGRSVKAPG 190

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: CBN79284.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.4 bits (220), Expect = 2.900e-14
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 0

Query:    5 WCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKP-ISRLRRK 110
            W FY +QGE+G+S + PNAF +        V L  FL AFPL          YH RF+  D++ G+ W DV D  A LP +   + AK LRLD +PKP  SRLRRK
Sbjct:    8 WVFYFLQGEDGDSVENPNAFNI--MGAVSEVRLGQFLQAFPLRGHGGQ----YHFRFRAPDQVSGYCWMDVSDPSAVLPRYGNVICAKALRLDRLPKPRSSRLRRK 107

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: XP_002904175.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY54353.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 75.5 bits (184), Expect = 4.300e-10
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 0

Query:    5 WCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKV-KDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGS 119
            W FY++QGE+GE    PNAF L    +   VTL   L +FPL N        +H RF++   K   F W DV      +P   G +  K+LRL+   KP    RR+P++  A GS
Sbjct:    6 WAFYYLQGEDGEDRSHPNAFKLTGVSSGADVTLADVLRSFPLRN-----PAAFHFRFRLNSSKSNTFYWLDVTQPTQKVPLAGGRVICKLLRLERPKKPGLVFRRRPVLKWASGS 115

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: ETL99816.1 (hypothetical protein L917_03384 [Phytophthora parasitica])

HSP 1 Score: 74.7 bits (182), Expect = 7.400e-10
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 0

Query:    5 WCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKV-KDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGS 119
            W FY++QGE+GE    PNAF L    +   VTL   L +FPL N        +H RF++   K   F W DV      +P   G +  K+LRL+   KP    RR+P++  A GS
Sbjct:    6 WAFYYLQGEDGEDRSHPNAFKLTGLSSGTDVTLADVLRSFPLRNPS-----AFHFRFRLNSSKGNTFYWLDVTQPTQKVPLAGGRVICKLLRLERPQKPGLVFRRRPVLKWASGS 115

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: ETK93264.1 (hypothetical protein L915_03513 [Phytophthora parasitica] >KUF93442.1 Cyclin-G-associated kinase [Phytophthora nicotianae])

HSP 1 Score: 74.3 bits (181), Expect = 9.600e-10
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 0

Query:    5 WCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKV-KDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGS 119
            W FY++QGE+GE    PNAF L        VTL   L +FPL N        +H RF++  +K   F W DV      +P   G +  K+LRL+   KP    RR+P++  A GS
Sbjct:    6 WAFYYLQGEDGEDRSHPNAFKLTGLSPGTDVTLADVLRSFPLRNPS-----AFHFRFRLNSNKGNTFYWLDVTQPTQKVPLAGGRVICKLLRLERPQKPGLVFRRRPVLKWASGS 115

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: ETL46671.1 (hypothetical protein L916_03464, partial [Phytophthora parasitica])

HSP 1 Score: 74.3 bits (181), Expect = 9.600e-10
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 0

Query:    5 WCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKV-KDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGS 119
            W FY++QGE+GE    PNAF L        VTL   L +FPL N        +H RF++  +K   F W DV      +P   G +  K+LRL+   KP    RR+P++  A GS
Sbjct:    6 WAFYYLQGEDGEDRSHPNAFKLTGLSPGTDVTLADVLRSFPLRNPS-----AFHFRFRLNSNKGNTFYWLDVTQPTQKVPLAGGRVICKLLRLERPQKPGLVFRRRPVLKWASGS 115

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: ETP23210.1 (hypothetical protein F441_03613 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 74.3 bits (181), Expect = 9.600e-10
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 0

Query:    5 WCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKV-KDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGS 119
            W FY++QGE+GE    PNAF L        VTL   L +FPL N        +H RF++  +K   F W DV      +P   G +  K+LRL+   KP    RR+P++  A GS
Sbjct:    6 WAFYYLQGEDGEDRSHPNAFKLTGLSPGTDVTLADVLRSFPLRNPS-----AFHFRFRLNSNKGNTFYWLDVTQPTQKVPLAGGRVICKLLRLERPQKPGLVFRRRPVLKWASGS 115

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: KUF98304.1 (Transcription initiation factor IIF subunit beta [Phytophthora nicotianae])

HSP 1 Score: 74.3 bits (181), Expect = 9.600e-10
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 0

Query:    5 WCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKV-KDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGS 119
            W FY++QGE+GE    PNAF L        VTL   L +FPL N        +H RF++  +K   F W DV      +P   G +  K+LRL+   KP    RR+P++  A GS
Sbjct:    6 WAFYYLQGEDGEDRSHPNAFKLTGLSPGTDVTLADVLRSFPLRNPS-----AFHFRFRLNSNKGNTFYWLDVTQPTQKVPLAGGRVICKLLRLERPQKPGLVFRRRPVLKWASGS 115

[Close]

BLAST of NO12G03050 vs. NCBI_GenBank
Match: ETI53423.1 (hypothetical protein F443_03619 [Phytophthora parasitica P1569] >ETP51217.1 hypothetical protein F442_03599 [Phytophthora parasitica P10297])

HSP 1 Score: 73.9 bits (180), Expect = 1.300e-9
Identity = 43/115 (37.39%), Postives = 57/115 (49.57%), Query Frame = 0

Query:    5 WCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKV-KDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGS 119
            W FY++QGE+GE    PNAF L        VTL   L +FPL N        +H RF++   K   F W DV      +P   G +  K+LRL+   KP    RR+P++  A GS
Sbjct:    6 WAFYYLQGEDGEDRSHPNAFKLTGISPGTDVTLTDVLRSFPLRNPS-----AFHFRFRLNSSKGNTFYWLDVTQPTQKVPLAGGRVICKLLRLERPQKPGLVFRRRPVLKWASGS 115

The following BLAST results are available for this feature:

BLAST of NO12G03050 vs. NCBI_GenBank

BLAST of NO12G03050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15


Match Name	E-value	Identity	Description
XP_005854869.1	9.500e-34	45.36	hypothetical protein NGA_2058800, partial [Nannoch...	[more]
EWM25733.1	9.500e-34	45.36	dnaj heat shock n-terminal domain-containing prote...	[more]
CBN79284.1	2.900e-14	45.28	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_002904175.1	4.300e-10	37.39	conserved hypothetical protein [Phytophthora infes...	[more]
ETL99816.1	7.400e-10	37.39	hypothetical protein L917_03384 [Phytophthora para...	[more]
ETK93264.1	9.600e-10	37.39	hypothetical protein L915_03513 [Phytophthora para...	[more]
ETL46671.1	9.600e-10	37.39	hypothetical protein L916_03464, partial [Phytopht...	[more]
ETP23210.1	9.600e-10	37.39	hypothetical protein F441_03613 [Phytophthora para...	[more]
KUF98304.1	9.600e-10	37.39	Transcription initiation factor IIF subunit beta [...	[more]
ETI53423.1	1.300e-9	37.39	hypothetical protein F443_03619 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL125	nonsL125	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL124	nonsL124	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR015	ncniR015	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR014	ncniR014	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR007	ngnoR007	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR006	ngnoR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010252	NSK010252	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO12G03050.2	NO12G03050.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO12G03050.1	NO12G03050.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|68193	gene_5479	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100087g12	gene4779	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO12G03050.2	NO12G03050.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO12G03050.1	NO12G03050.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO12G03050 ID=NO12G03050|Name=NO12G03050|organism=Nannochloropsis oceanica|type=gene|length=2046bp
AAACAAACACATAGAGCCACTTTCAGCAGCACAAGCGTGAGCACTACCAG
GAGATAAACGCCTCGACCGTCATGGCACGGCCTTGGTGTTTCTACCACGT
CCAGGGCGAAGAGGGAGAGAGCGAGGACGAACCCAACGCCTTTGTCCTCC
CTCCCTCTGACACAACTGGGCACGTGACCCTCAGGCACTTCCTTGCCGCC
TTTCCCCTGGCCAACAAGCAAGATAGTGACGACCGGGTGTATCACGCTCG
ATTCAAGGTAAAGGACAAGATTTGTGGGTTTGCGTGGCAAGATGTCCAGG
ATGCCCAAGCACCTCTGCCTTTTTTCCAAGGCGCCCTTCACGCCAAGATC
CTCCGTCTGGACATTGTCCCCAAGCCCATCTCTCGGCTGCGTCGGAAGCC
CTTGGTCAATATAGCAGGAGGGAGTGGAGGAGGAGGACAACGGAGAATTG
AACTCAAGACATCGGCGGGTGTCCGTGTGAAGCCCCCTTCCTCGTACGTC
CCATCCCCAGCTCCTCCTACACCACGCCACCACCAAAATCAAACCTCCAC
CTCACGCAAAGCTTCCCGACCTGCCCCTCCTTCGTCTACACCATTGACTC
CACAAAGGATAGCATCACCCTCTAACGGACCGGCGCATGGCAGTAGTGGG
AATAGCCACATGGACTCTCGCATTTGCAACGGAGCAGGAGAGGGAGGAGT
ACGAGGAAGTGCCTCCGCATTCACACCACCGTCACCGCCCCCATATCCCG
TCAAGCCATCGTCTTCTACCGGTGGCGATGATCTGGACAGCTTCTTGTAC
GGAGGCGGCAACAGCAGTGGCAGCAATGGTGGCACTATCCCTGGACCTCG
CCAGCAGCACCAACCCCCACGACCACCACCCACCAACGCAGCATCCCCCG
TGCGCTCCTCTCCTTCTCCTCCTCCTACCACCAGAGTCTCCCCCCCCCCC
TCTTCAGCCCGCATCAACTCCAGCAGCCCTGCTCCGCGTCCCAGCCCTCC
CCTCAGCGCAGGTATGGCTGGTCTCGACATAGACGACGACGACGACGACG
ACGACGACGCCCCTTACCCCTTCTCCACCACCACCAAAACCAGCGGCGGC
AGCAGTGGCAACAACAAAAATGGCAGCAGGAGCACCACTCCCATCCCTCC
CAATCCCACGGCAAATGCCACGCCCGAAGAGCTGTTTTTCATGCAGCCCA
CAAGCGTCAAGCAGGCCGAAGCCGCCAAGGAAGAGCAAGAGCAAGAGGCG
CTCCGTCACAAGTTGCTCCCTCGCCTGGACGCTTGGGCACGAGATCCCCC
CCAAGCAGGTGGTAAATTACGGAATGTTCGCACCTTGCTCTCGACCATGC
ACACGGTCTTGTGGCCGGGGTGTGTGAGTTGGAAGCCTGTCTTTTTGGGA
GATCTGATGGCGCCCGATCGTGTCAAGTTTCATTACCGGAAGGCCATGTT
AGTGGTGCACCCGGACAAGAACGTGAACGGCTCGGCGGAGCAGCGGTTTG
TGGCGGAGAAGgtacgggagggagggaaggagggagggaggaaggggggg
aggcagggggggaggatggtggggtgtgctcggagaaggtcgtttaagca
tgttgcacaggcacggactcatactcactcctccctccctccctcccccc
tttccacatctctttcacgctcacagGTGTTCACCAGCGTGAACGAGGCC
TACACATTGTTTGCGGCTCAAGAGATGAAATGAACCATGACAAGTTGACA
TGCCGTAGTACCCTCAGCAGGAGAGACTGGTGTTTTCACGCGTATTTATA
TTCGACTTACCCCTCCTCGGCGACTTGGAGAGATATAGAAATTAGACAAG
ACCGACACGAAAGGAAGGGGCAGGAAGGGAATCACAAATTGTACTTTTAA
TAAATTTACATCGAGATGTTTAGATGTGCTATAAGTGTAGATGGGTCAGC
AGGCGTCAGAGAAGAGAGCGAAAAGGAAGAAGAGTAGAAAGAAGAGGAAC
TACAACAACACCAGAACGGTACTTGCGGATTTCTACAGGAAAAATA

protein sequence of NO12G03050.2

>NO12G03050.2-protein ID=NO12G03050.2-protein|Name=NO12G03050.2|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQ
DSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVP
KPISRLRRKPLVNIAGGSGGGGQRRIELKTSAGVRVKPPSSYVPSPAPPT
PRHHQNQTSTSRKASRPAPPSSTPLTPQRIASPSNGPAHGSSGNSHMDSR
ICNGAGEGGVRGSASAFTPPSPPPYPVKPSSSTGGDDLDSFLYGGGNSSG
SNGGTIPGPRQQHQPPRPPPTNAASPVRSSPSPPPTTRVSPPPSSARINS
SSPAPRPSPPLSAGMAGLDIDDDDDDDDDAPYPFSTTTKTSGGSSGNNKN
GSRSTTPIPPNPTANATPEELFFMQPTSVKQAEAAKEEQEQEALRHKLLP
RLDAWARDPPQAGGKLRNVRTLLSTMHTVLWPGCVSWKPVFLGDLMAPDR
VKFHYRKAMLVVHPDKNVNGSAEQRFVAEKVFTSVNEAYTLFAAQEMK*

protein sequence of NO12G03050.1

>NO12G03050.1-protein ID=NO12G03050.1-protein|Name=NO12G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQ
DSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVP
KPISRLRRKPLVNIAGGSGGGGQRRIELKTSAGVRVKPPSSYVPSPAPPT
PRHHQNQTSTSRKASRPAPPSSTPLTPQRIASPSNGPAHGSSGNSHMDSR
ICNGAGEGGVRGSASAFTPPSPPPYPVKPSSSTGGDDLDSFLYGGGNSSG
SNGGTIPGPRQQHQPPRPPPTNAASPVRSSPSPPPTTRVSPPPSSARINS
SSPAPRPSPPLSAAAAAVATTKMAAGAPLPSLPIPRQMPRPKSCFSCSPQ
ASSRPKPPRKSKSKRRSVTSCSLAWTLGHEIPPKQVVNYGMFAPCSRPCT
RSCGRGV*

Synonyms

Publications