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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:838474..840519 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03050.2 vs.
Match: EWM25733.1 (dnaj heat shock n-terminal domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 410.2 bits (1053), Expect = 9.000e-111 Identity = 262/513 (51.07%), Postives = 317/513 (61.79%), Query Frame = 0
Query: 1 MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGSGGGGQRR-IELKTSAGVRVKPPSSYVPSPAPPTPRHHQNQTSTSRKASRPAPPSSTPLTPQRIASPSNGPAHGSSGNSHMDSRICNGAGEGGVRGSASAFTPPSPPPY------------PVKPSSSTGGDDLDSFLYGG-GNSSGSNGGTIPGPRQQHQPPRPPPTNAASPVRSSPSPPPTTRVSPPPSSARINSSSPAPRPSPPLSAGMAGLDIDDDDDDDDDAPYPFSTTTKTSGGSSGNNKNGSRSTTPIPPNPTAN-ATPEELFFMQPTSVKQAEAAKEEQEQEALRHKLLPRLDAWARDPPQAGGKLRNVRTLLSTMHTVLWPGCVSWKPVFLGDLMAPDRVKFHYRKAMLVVHPDKNVNGSAEQRFVAEKVFTSVNEAYTLFAAQEMK 499
MARPWCFY VQGEEGES +EPN F LP + G +L+HFL AFPL +Q DRVYHARFKVKD + G+ WQDV D Q LP +QGA+H K+LRLD P+P +RLRRKPL + GG R+ + T++ R SS+V +P PR T++S A+ P + P T + G S + + +G V S P P S++ GDDLD FLYG G+ + ++ + P R Q +P V SSP PP T SPPP R +S+SP PRP PPLSAGMAGLDID+DD +P P S+ +S G G TP P P+ ATPEELFFMQPT+ KQAEAAKEEQE +ALR ++ PRL+ WARDPP AGGKLRN+R+LLSTMHTVLW +WKPVFLGDLMAP+RVKF+YRKAMLVVHPDKNV GSAEQRFVAEKVFTSVNEAYT+FAA+E+K
Sbjct: 1 MARPWCFYFVQGEEGESPEEPNVFALP---SNGAASLKHFLGAFPLT-QQKGGDRVYHARFKVKDDLFGYVWQDVVDPQDTLPVYQGAIHVKVLRLDKPPRPTTRLRRKPLGTLGGGRPAASMRQDVGRGTASTARNTTSSSHVATP----PRRPDVSTASSGVAATAVPSAVRPPTSSSSGISTQTVEQGRSVKAPGERPSASGTSTQTVEQGRSVKAPRERPSERQGRRQAGGKVGAPPGSTAASGDDLDRFLYGSTGSDTPASPSSSPSSRPQSRPTPHAVQGGLPRVHSSP-PPVGTAASPPPP--RAHSASPGPRPGPPLSAGMAGLDIDEDD-----SPPPPSSFPPSSSGRGG--------PTPPPKGPSPPPATPEELFFMQPTTTKQAEAAKEEQEADALRQRVGPRLEQWARDPPAAGGKLRNIRSLLSTMHTVLWADS-AWKPVFLGDLMAPERVKFYYRKAMLVVHPDKNVTGSAEQRFVAEKVFTSVNEAYTVFAAKELK 488
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03050.2 ID=NO12G03050.2|Name=NO12G03050.2|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp AAACAAACACATAGAGCCACTTTCAGCAGCACAAGCGTGAGCACTACCAG GAGATAAACGCCTCGACCGTCATGGCACGGCCTTGGTGTTTCTACCACGT CCAGGGCGAAGAGGGAGAGAGCGAGGACGAACCCAACGCCTTTGTCCTCC CTCCCTCTGACACAACTGGGCACGTGACCCTCAGGCACTTCCTTGCCGCC TTTCCCCTGGCCAACAAGCAAGATAGTGACGACCGGGTGTATCACGCTCG ATTCAAGGTAAAGGACAAGATTTGTGGGTTTGCGTGGCAAGATGTCCAGG ATGCCCAAGCACCTCTGCCTTTTTTCCAAGGCGCCCTTCACGCCAAGATC CTCCGTCTGGACATTGTCCCCAAGCCCATCTCTCGGCTGCGTCGGAAGCC CTTGGTCAATATAGCAGGAGGGAGTGGAGGAGGAGGACAACGGAGAATTG AACTCAAGACATCGGCGGGTGTCCGTGTGAAGCCCCCTTCCTCGTACGTC CCATCCCCAGCTCCTCCTACACCACGCCACCACCAAAATCAAACCTCCAC CTCACGCAAAGCTTCCCGACCTGCCCCTCCTTCGTCTACACCATTGACTC CACAAAGGATAGCATCACCCTCTAACGGACCGGCGCATGGCAGTAGTGGG AATAGCCACATGGACTCTCGCATTTGCAACGGAGCAGGAGAGGGAGGAGT ACGAGGAAGTGCCTCCGCATTCACACCACCGTCACCGCCCCCATATCCCG TCAAGCCATCGTCTTCTACCGGTGGCGATGATCTGGACAGCTTCTTGTAC GGAGGCGGCAACAGCAGTGGCAGCAATGGTGGCACTATCCCTGGACCTCG CCAGCAGCACCAACCCCCACGACCACCACCCACCAACGCAGCATCCCCCG TGCGCTCCTCTCCTTCTCCTCCTCCTACCACCAGAGTCTCCCCCCCCCCC TCTTCAGCCCGCATCAACTCCAGCAGCCCTGCTCCGCGTCCCAGCCCTCC CCTCAGCGCAGGTATGGCTGGTCTCGACATAGACGACGACGACGACGACG ACGACGACGCCCCTTACCCCTTCTCCACCACCACCAAAACCAGCGGCGGC AGCAGTGGCAACAACAAAAATGGCAGCAGGAGCACCACTCCCATCCCTCC CAATCCCACGGCAAATGCCACGCCCGAAGAGCTGTTTTTCATGCAGCCCA CAAGCGTCAAGCAGGCCGAAGCCGCCAAGGAAGAGCAAGAGCAAGAGGCG CTCCGTCACAAGTTGCTCCCTCGCCTGGACGCTTGGGCACGAGATCCCCC CCAAGCAGGTGGTAAATTACGGAATGTTCGCACCTTGCTCTCGACCATGC ACACGGTCTTGTGGCCGGGGTGTGTGAGTTGGAAGCCTGTCTTTTTGGGA GATCTGATGGCGCCCGATCGTGTCAAGTTTCATTACCGGAAGGCCATGTT AGTGGTGCACCCGGACAAGAACGTGAACGGCTCGGCGGAGCAGCGGTTTG TGGCGGAGAAGGTGTTCACCAGCGTGAACGAGGCCTACACATTGTTTGCG GCTCAAGAGATGAAATGAACCATGACAAGTTGACATGCCGTAGTACCCTC AGCAGGAGAGACTGGTGTTTTCACGCGTATTTATATTCGACTTACCCCTC CTCGGCGACTTGGAGAGATATAGAAATTAGACAAGACCGACACGAAAGGA AGGGGCAGGAAGGGAATCACAAATTGTACTTTTAATAAATTTACATCGAG ATGTTTAGATGTGCTATAAGTGTAGATGGGTCAGCAGGCGTCAGAGAAGA GAGCGAAAAGGAAGAAGAGTAGAAAGAAGAGGAACTACAACAACACCAGA ACGGTACTTGCGGATTTCTACAGGAAAAATA back to topprotein sequence of NO12G03050.2 >NO12G03050.2-protein ID=NO12G03050.2-protein|Name=NO12G03050.2|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQ DSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVP KPISRLRRKPLVNIAGGSGGGGQRRIELKTSAGVRVKPPSSYVPSPAPPT PRHHQNQTSTSRKASRPAPPSSTPLTPQRIASPSNGPAHGSSGNSHMDSR ICNGAGEGGVRGSASAFTPPSPPPYPVKPSSSTGGDDLDSFLYGGGNSSG SNGGTIPGPRQQHQPPRPPPTNAASPVRSSPSPPPTTRVSPPPSSARINS SSPAPRPSPPLSAGMAGLDIDDDDDDDDDAPYPFSTTTKTSGGSSGNNKN GSRSTTPIPPNPTANATPEELFFMQPTSVKQAEAAKEEQEQEALRHKLLP RLDAWARDPPQAGGKLRNVRTLLSTMHTVLWPGCVSWKPVFLGDLMAPDR VKFHYRKAMLVVHPDKNVNGSAEQRFVAEKVFTSVNEAYTLFAAQEMK* back to topmRNA from alignment at chr12:838474..840519- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03050.2 ID=NO12G03050.2|Name=NO12G03050.2|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at chr12:838474..840519- (Nannochloropsis oceanica) AAACAAACACATAGAGCCACTTTCAGCAGCACAAGCGTGAGCACTACCAG
GAGATAAACGCCTCGACCGTCATGGCACGGCCTTGGTGTTTCTACCACGT
CCAGGGCGAAGAGGGAGAGAGCGAGGACGAACCCAACGCCTTTGTCCTCC
CTCCCTCTGACACAACTGGGCACGTGACCCTCAGGCACTTCCTTGCCGCC
TTTCCCCTGGCCAACAAGCAAGATAGTGACGACCGGGTGTATCACGCTCG
ATTCAAGGTAAAGGACAAGATTTGTGGGTTTGCGTGGCAAGATGTCCAGG
ATGCCCAAGCACCTCTGCCTTTTTTCCAAGGCGCCCTTCACGCCAAGATC
CTCCGTCTGGACATTGTCCCCAAGCCCATCTCTCGGCTGCGTCGGAAGCC
CTTGGTCAATATAGCAGGAGGGAGTGGAGGAGGAGGACAACGGAGAATTG
AACTCAAGACATCGGCGGGTGTCCGTGTGAAGCCCCCTTCCTCGTACGTC
CCATCCCCAGCTCCTCCTACACCACGCCACCACCAAAATCAAACCTCCAC
CTCACGCAAAGCTTCCCGACCTGCCCCTCCTTCGTCTACACCATTGACTC
CACAAAGGATAGCATCACCCTCTAACGGACCGGCGCATGGCAGTAGTGGG
AATAGCCACATGGACTCTCGCATTTGCAACGGAGCAGGAGAGGGAGGAGT
ACGAGGAAGTGCCTCCGCATTCACACCACCGTCACCGCCCCCATATCCCG
TCAAGCCATCGTCTTCTACCGGTGGCGATGATCTGGACAGCTTCTTGTAC
GGAGGCGGCAACAGCAGTGGCAGCAATGGTGGCACTATCCCTGGACCTCG
CCAGCAGCACCAACCCCCACGACCACCACCCACCAACGCAGCATCCCCCG
TGCGCTCCTCTCCTTCTCCTCCTCCTACCACCAGAGTCTCCCCCCCCCCC
TCTTCAGCCCGCATCAACTCCAGCAGCCCTGCTCCGCGTCCCAGCCCTCC
CCTCAGCGCAGGTATGGCTGGTCTCGACATAGACGACGACGACGACGACG
ACGACGACGCCCCTTACCCCTTCTCCACCACCACCAAAACCAGCGGCGGC
AGCAGTGGCAACAACAAAAATGGCAGCAGGAGCACCACTCCCATCCCTCC
CAATCCCACGGCAAATGCCACGCCCGAAGAGCTGTTTTTCATGCAGCCCA
CAAGCGTCAAGCAGGCCGAAGCCGCCAAGGAAGAGCAAGAGCAAGAGGCG
CTCCGTCACAAGTTGCTCCCTCGCCTGGACGCTTGGGCACGAGATCCCCC
CCAAGCAGGTGGTAAATTACGGAATGTTCGCACCTTGCTCTCGACCATGC
ACACGGTCTTGTGGCCGGGGTGTGTGAGTTGGAAGCCTGTCTTTTTGGGA
GATCTGATGGCGCCCGATCGTGTCAAGTTTCATTACCGGAAGGCCATGTT
AGTGGTGCACCCGGACAAGAACGTGAACGGCTCGGCGGAGCAGCGGTTTG
TGGCGGAGAAGGTACGGGAGGGAGGGAAGGAGGGAGGGAGGAAGGGGGGG
AGGCAGGGGGGGAGGATGGTGGGGTGTGCTCGGAGAAGGTCGTTTAAGCA
TGTTGCACAGGCACGGACTCATACTCACTCCTCCCTCCCTCCCTCCCCCC
TTTCCACATCTCTTTCACGCTCACAGGTGTTCACCAGCGTGAACGAGGCC
TACACATTGTTTGCGGCTCAAGAGATGAAATGAACCATGACAAGTTGACA
TGCCGTAGTACCCTCAGCAGGAGAGACTGGTGTTTTCACGCGTATTTATA
TTCGACTTACCCCTCCTCGGCGACTTGGAGAGATATAGAAATTAGACAAG
ACCGACACGAAAGGAAGGGGCAGGAAGGGAATCACAAATTGTACTTTTAA
TAAATTTACATCGAGATGTTTAGATGTGCTATAAGTGTAGATGGGTCAGC
AGGCGTCAGAGAAGAGAGCGAAAAGGAAGAAGAGTAGAAAGAAGAGGAAC
TACAACAACACCAGAACGGTACTTGCGGATTTCTACAGGAAAAATA back to topCoding sequence (CDS) from alignment at chr12:838474..840519- >NO12G03050.2 ID=NO12G03050.2|Name=NO12G03050.2|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at chr12:838474..840519- (Nannochloropsis oceanica) ATGGCACGGCCTTGGTGTTTCTACCACGTCCAGGGCGAAGAGGGAGAGAG CGAGGACGAACCCAACGCCTTTGTCCTCCCTCCCTCTGACACAACTGGGC ACGTGACCCTCAGGCACTTCCTTGCCGCCTTTCCCCTGGCCAACAAGCAA GATAGTGACGACCGGGTGTATCACGCTCGATTCAAGGTAAAGGACAAGAT TTGTGGGTTTGCGTGGCAAGATGTCCAGGATGCCCAAGCACCTCTGCCTT TTTTCCAAGGCGCCCTTCACGCCAAGATCCTCCGTCTGGACATTGTCCCC AAGCCCATCTCTCGGCTGCGTCGGAAGCCCTTGGTCAATATAGCAGGAGG GAGTGGAGGAGGAGGACAACGGAGAATTGAACTCAAGACATCGGCGGGTG TCCGTGTGAAGCCCCCTTCCTCGTACGTCCCATCCCCAGCTCCTCCTACA CCACGCCACCACCAAAATCAAACCTCCACCTCACGCAAAGCTTCCCGACC TGCCCCTCCTTCGTCTACACCATTGACTCCACAAAGGATAGCATCACCCT CTAACGGACCGGCGCATGGCAGTAGTGGGAATAGCCACATGGACTCTCGC ATTTGCAACGGAGCAGGAGAGGGAGGAGTACGAGGAAGTGCCTCCGCATT CACACCACCGTCACCGCCCCCATATCCCGTCAAGCCATCGTCTTCTACCG GTGGCGATGATCTGGACAGCTTCTTGTACGGAGGCGGCAACAGCAGTGGC AGCAATGGTGGCACTATCCCTGGACCTCGCCAGCAGCACCAACCCCCACG ACCACCACCCACCAACGCAGCATCCCCCGTGCGCTCCTCTCCTTCTCCTC CTCCTACCACCAGAGTCTCCCCCCCCCCCTCTTCAGCCCGCATCAACTCC AGCAGCCCTGCTCCGCGTCCCAGCCCTCCCCTCAGCGCAGGTATGGCTGG TCTCGACATAGACGACGACGACGACGACGACGACGACGCCCCTTACCCCT TCTCCACCACCACCAAAACCAGCGGCGGCAGCAGTGGCAACAACAAAAAT GGCAGCAGGAGCACCACTCCCATCCCTCCCAATCCCACGGCAAATGCCAC GCCCGAAGAGCTGTTTTTCATGCAGCCCACAAGCGTCAAGCAGGCCGAAG CCGCCAAGGAAGAGCAAGAGCAAGAGGCGCTCCGTCACAAGTTGCTCCCT CGCCTGGACGCTTGGGCACGAGATCCCCCCCAAGCAGGTGGTAAATTACG GAATGTTCGCACCTTGCTCTCGACCATGCACACGGTCTTGTGGCCGGGGT GTGTGAGTTGGAAGCCTGTCTTTTTGGGAGATCTGATGGCGCCCGATCGT GTCAAGTTTCATTACCGGAAGGCCATGTTAGTGGTGCACCCGGACAAGAA CGTGAACGGCTCGGCGGAGCAGCGGTTTGTGGCGGAGAAGGTGTTCACCA GCGTGAACGAGGCCTACACATTGTTTGCGGCTCAAGAGATGAAATGA back to top
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