NO12G03050.1, NO12G03050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03050.1
Unique NameNO12G03050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1799
Alignment locationchr12:838474..840519 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:838474..840519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03050.1 vs.
Match: EWM25733.1 (dnaj heat shock n-terminal domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 173.7 bits (439), Expect = 1.200e-39
Identity = 144/377 (38.20%), Postives = 183/377 (48.54%), Query Frame = 0 
Query:    1 MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQDSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVPKPISRLRRKPLVNIAGGSGGGGQRR-IELKTSAGVRVKPPSSYVPSPAPPTPRHHQNQTSTSRKASRPAPPSSTPLTPQRIASPSNGPAHGSSGNSHMDSRICNGAGEGGVRGSASAFTPPSPPPY------------PVKPSSSTGGDDLDSFLYGG-GNSSGSNGGTIPGPRQQHQPPRPPPTNAASPVRSSPSPPPTTRVSPPPSSARINSSSPAPRPSPPLSAAAAAVATTKMAAGAPLPSLPIPRQMPRPKSCFSCSPQASSRPKPPRKSKS 364
            MARPWCFY VQGEEGES +EPN F LP   + G  +L+HFL AFPL  +Q   DRVYHARFKVKD + G+ WQDV D Q  LP +QGA+H K+LRLD  P+P +RLRRKPL  + GG      R+ +   T++  R    SS+V +P    PR     T++S  A+   P +  P T       +     G S  +  +    +G     V    S   P   P                  S++  GDDLD FLYG  G+ + ++  + P  R Q +P           V SSP PP  T  SPPP   R +S+SP PRP PPLSA  A +   +                P P S F  S      P PP K  S
Sbjct:    1 MARPWCFYFVQGEEGESPEEPNVFALP---SNGAASLKHFLGAFPLT-QQKGGDRVYHARFKVKDDLFGYVWQDVVDPQDTLPVYQGAIHVKVLRLDKPPRPTTRLRRKPLGTLGGGRPAASMRQDVGRGTASTARNTTSSSHVATP----PRRPDVSTASSGVAATAVPSAVRPPTSSSSGISTQTVEQGRSVKAPGERPSASGTSTQTVEQGRSVKAPRERPSERQGRRQAGGKVGAPPGSTAASGDDLDRFLYGSTGSDTPASPSSSPSSRPQSRPTPHAVQGGLPRVHSSP-PPVGTAASPPP--PRAHSASPGPRPGPPLSAGMAGLDIDE-------------DDSPPPPSSFPPSSSGRGGPTPPPKGPS 353
The following BLAST results are available for this feature:
BLAST of NO12G03050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25733.11.200e-3938.20dnaj heat shock n-terminal domain-containing prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03050NO12G03050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03050.1NO12G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03050.1.cds1NO12G03050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03050.1.cds2NO12G03050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03050.1 ID=NO12G03050.1|Name=NO12G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp
AAACAAACACATAGAGCCACTTTCAGCAGCACAAGCGTGAGCACTACCAG
GAGATAAACGCCTCGACCGTCATGGCACGGCCTTGGTGTTTCTACCACGT
CCAGGGCGAAGAGGGAGAGAGCGAGGACGAACCCAACGCCTTTGTCCTCC
CTCCCTCTGACACAACTGGGCACGTGACCCTCAGGCACTTCCTTGCCGCC
TTTCCCCTGGCCAACAAGCAAGATAGTGACGACCGGGTGTATCACGCTCG
ATTCAAGGTAAAGGACAAGATTTGTGGGTTTGCGTGGCAAGATGTCCAGG
ATGCCCAAGCACCTCTGCCTTTTTTCCAAGGCGCCCTTCACGCCAAGATC
CTCCGTCTGGACATTGTCCCCAAGCCCATCTCTCGGCTGCGTCGGAAGCC
CTTGGTCAATATAGCAGGAGGGAGTGGAGGAGGAGGACAACGGAGAATTG
AACTCAAGACATCGGCGGGTGTCCGTGTGAAGCCCCCTTCCTCGTACGTC
CCATCCCCAGCTCCTCCTACACCACGCCACCACCAAAATCAAACCTCCAC
CTCACGCAAAGCTTCCCGACCTGCCCCTCCTTCGTCTACACCATTGACTC
CACAAAGGATAGCATCACCCTCTAACGGACCGGCGCATGGCAGTAGTGGG
AATAGCCACATGGACTCTCGCATTTGCAACGGAGCAGGAGAGGGAGGAGT
ACGAGGAAGTGCCTCCGCATTCACACCACCGTCACCGCCCCCATATCCCG
TCAAGCCATCGTCTTCTACCGGTGGCGATGATCTGGACAGCTTCTTGTAC
GGAGGCGGCAACAGCAGTGGCAGCAATGGTGGCACTATCCCTGGACCTCG
CCAGCAGCACCAACCCCCACGACCACCACCCACCAACGCAGCATCCCCCG
TGCGCTCCTCTCCTTCTCCTCCTCCTACCACCAGAGTCTCCCCCCCCCCC
TCTTCAGCCCGCATCAACTCCAGCAGCCCTGCTCCGCGTCCCAGCCCTCC
CCTCAGCGCAGCGGCGGCAGCAGTGGCAACAACAAAAATGGCAGCAGGAG
CACCACTCCCATCCCTCCCAATCCCACGGCAAATGCCACGCCCGAAGAGC
TGTTTTTCATGCAGCCCACAAGCGTCAAGCAGGCCGAAGCCGCCAAGGAA
GAGCAAGAGCAAGAGGCGCTCCGTCACAAGTTGCTCCCTCGCCTGGACGC
TTGGGCACGAGATCCCCCCCAAGCAGGTGGTAAATTACGGAATGTTCGCA
CCTTGCTCTCGACCATGCACACGGTCTTGTGGCCGGGGTGTGTGAGTTGG
AAGCCTGTCTTTTTGGGAGATCTGATGGCGCCCGATCGTGTCAAGTTTCA
TTACCGGAAGGCCATGTTAGTGGTGCACCCGGACAAGAACGTGAACGGCT
CGGCGGAGCAGCGGTTTGTGGCGGAGAAGGTGTTCACCAGCGTGAACGAG
GCCTACACATTGTTTGCGGCTCAAGAGATGAAATGAACCATGACAAGTTG
ACATGCCGTAGTACCCTCAGCAGGAGAGACTGGTGTTTTCACGCGTATTT
ATATTCGACTTACCCCTCCTCGGCGACTTGGAGAGATATAGAAATTAGAC
AAGACCGACACGAAAGGAAGGGGCAGGAAGGGAATCACAAATTGTACTTT
TAATAAATTTACATCGAGATGTTTAGATGTGCTATAAGTGTAGATGGGTC
AGCAGGCGTCAGAGAAGAGAGCGAAAAGGAAGAAGAGTAGAAAGAAGAGG
AACTACAACAACACCAGAACGGTACTTGCGGATTTCTACAGGAAAAATA
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protein sequence of NO12G03050.1

>NO12G03050.1-protein ID=NO12G03050.1-protein|Name=NO12G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQ
DSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVP
KPISRLRRKPLVNIAGGSGGGGQRRIELKTSAGVRVKPPSSYVPSPAPPT
PRHHQNQTSTSRKASRPAPPSSTPLTPQRIASPSNGPAHGSSGNSHMDSR
ICNGAGEGGVRGSASAFTPPSPPPYPVKPSSSTGGDDLDSFLYGGGNSSG
SNGGTIPGPRQQHQPPRPPPTNAASPVRSSPSPPPTTRVSPPPSSARINS
SSPAPRPSPPLSAAAAAVATTKMAAGAPLPSLPIPRQMPRPKSCFSCSPQ
ASSRPKPPRKSKSKRRSVTSCSLAWTLGHEIPPKQVVNYGMFAPCSRPCT
RSCGRGV*
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mRNA from alignment at chr12:838474..840519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03050.1 ID=NO12G03050.1|Name=NO12G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at chr12:838474..840519- (Nannochloropsis oceanica)
AAACAAACACATAGAGCCACTTTCAGCAGCACAAGCGTGAGCACTACCAG
GAGATAAACGCCTCGACCGTCATGGCACGGCCTTGGTGTTTCTACCACGT
CCAGGGCGAAGAGGGAGAGAGCGAGGACGAACCCAACGCCTTTGTCCTCC
CTCCCTCTGACACAACTGGGCACGTGACCCTCAGGCACTTCCTTGCCGCC
TTTCCCCTGGCCAACAAGCAAGATAGTGACGACCGGGTGTATCACGCTCG
ATTCAAGGTAAAGGACAAGATTTGTGGGTTTGCGTGGCAAGATGTCCAGG
ATGCCCAAGCACCTCTGCCTTTTTTCCAAGGCGCCCTTCACGCCAAGATC
CTCCGTCTGGACATTGTCCCCAAGCCCATCTCTCGGCTGCGTCGGAAGCC
CTTGGTCAATATAGCAGGAGGGAGTGGAGGAGGAGGACAACGGAGAATTG
AACTCAAGACATCGGCGGGTGTCCGTGTGAAGCCCCCTTCCTCGTACGTC
CCATCCCCAGCTCCTCCTACACCACGCCACCACCAAAATCAAACCTCCAC
CTCACGCAAAGCTTCCCGACCTGCCCCTCCTTCGTCTACACCATTGACTC
CACAAAGGATAGCATCACCCTCTAACGGACCGGCGCATGGCAGTAGTGGG
AATAGCCACATGGACTCTCGCATTTGCAACGGAGCAGGAGAGGGAGGAGT
ACGAGGAAGTGCCTCCGCATTCACACCACCGTCACCGCCCCCATATCCCG
TCAAGCCATCGTCTTCTACCGGTGGCGATGATCTGGACAGCTTCTTGTAC
GGAGGCGGCAACAGCAGTGGCAGCAATGGTGGCACTATCCCTGGACCTCG
CCAGCAGCACCAACCCCCACGACCACCACCCACCAACGCAGCATCCCCCG
TGCGCTCCTCTCCTTCTCCTCCTCCTACCACCAGAGTCTCCCCCCCCCCC
TCTTCAGCCCGCATCAACTCCAGCAGCCCTGCTCCGCGTCCCAGCCCTCC
CCTCAGCGCAGGTATGGCTGGTCTCGACATAGACGACGACGACGACGACG
ACGACGACGCCCCTTACCCCTTCTCCACCACCACCAAAACCAGCGGCGGC
AGCAGTGGCAACAACAAAAATGGCAGCAGGAGCACCACTCCCATCCCTCC
CAATCCCACGGCAAATGCCACGCCCGAAGAGCTGTTTTTCATGCAGCCCA
CAAGCGTCAAGCAGGCCGAAGCCGCCAAGGAAGAGCAAGAGCAAGAGGCG
CTCCGTCACAAGTTGCTCCCTCGCCTGGACGCTTGGGCACGAGATCCCCC
CCAAGCAGGTGGTAAATTACGGAATGTTCGCACCTTGCTCTCGACCATGC
ACACGGTCTTGTGGCCGGGGTGTGTGAGTTGGAAGCCTGTCTTTTTGGGA
GATCTGATGGCGCCCGATCGTGTCAAGTTTCATTACCGGAAGGCCATGTT
AGTGGTGCACCCGGACAAGAACGTGAACGGCTCGGCGGAGCAGCGGTTTG
TGGCGGAGAAGGTACGGGAGGGAGGGAAGGAGGGAGGGAGGAAGGGGGGG
AGGCAGGGGGGGAGGATGGTGGGGTGTGCTCGGAGAAGGTCGTTTAAGCA
TGTTGCACAGGCACGGACTCATACTCACTCCTCCCTCCCTCCCTCCCCCC
TTTCCACATCTCTTTCACGCTCACAGGTGTTCACCAGCGTGAACGAGGCC
TACACATTGTTTGCGGCTCAAGAGATGAAATGAACCATGACAAGTTGACA
TGCCGTAGTACCCTCAGCAGGAGAGACTGGTGTTTTCACGCGTATTTATA
TTCGACTTACCCCTCCTCGGCGACTTGGAGAGATATAGAAATTAGACAAG
ACCGACACGAAAGGAAGGGGCAGGAAGGGAATCACAAATTGTACTTTTAA
TAAATTTACATCGAGATGTTTAGATGTGCTATAAGTGTAGATGGGTCAGC
AGGCGTCAGAGAAGAGAGCGAAAAGGAAGAAGAGTAGAAAGAAGAGGAAC
TACAACAACACCAGAACGGTACTTGCGGATTTCTACAGGAAAAATA
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Coding sequence (CDS) from alignment at chr12:838474..840519-

>NO12G03050.1 ID=NO12G03050.1|Name=NO12G03050.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr12:838474..840519- (Nannochloropsis oceanica)
ATGGCACGGCCTTGGTGTTTCTACCACGTCCAGGGCGAAGAGGGAGAGAG
CGAGGACGAACCCAACGCCTTTGTCCTCCCTCCCTCTGACACAACTGGGC
ACGTGACCCTCAGGCACTTCCTTGCCGCCTTTCCCCTGGCCAACAAGCAA
GATAGTGACGACCGGGTGTATCACGCTCGATTCAAGGTAAAGGACAAGAT
TTGTGGGTTTGCGTGGCAAGATGTCCAGGATGCCCAAGCACCTCTGCCTT
TTTTCCAAGGCGCCCTTCACGCCAAGATCCTCCGTCTGGACATTGTCCCC
AAGCCCATCTCTCGGCTGCGTCGGAAGCCCTTGGTCAATATAGCAGGAGG
GAGTGGAGGAGGAGGACAACGGAGAATTGAACTCAAGACATCGGCGGGTG
TCCGTGTGAAGCCCCCTTCCTCGTACGTCCCATCCCCAGCTCCTCCTACA
CCACGCCACCACCAAAATCAAACCTCCACCTCACGCAAAGCTTCCCGACC
TGCCCCTCCTTCGTCTACACCATTGACTCCACAAAGGATAGCATCACCCT
CTAACGGACCGGCGCATGGCAGTAGTGGGAATAGCCACATGGACTCTCGC
ATTTGCAACGGAGCAGGAGAGGGAGGAGTACGAGGAAGTGCCTCCGCATT
CACACCACCGTCACCGCCCCCATATCCCGTCAAGCCATCGTCTTCTACCG
GTGGCGATGATCTGGACAGCTTCTTGTACGGAGGCGGCAACAGCAGTGGC
AGCAATGGTGGCACTATCCCTGGACCTCGCCAGCAGCACCAACCCCCACG
ACCACCACCCACCAACGCAGCATCCCCCGTGCGCTCCTCTCCTTCTCCTC
CTCCTACCACCAGAGTCTCCCCCCCCCCCTCTTCAGCCCGCATCAACTCC
AGCAGCCCTGCTCCGCGTCCCAGCCCTCCCCTCAGCGCAGCGGCGGCAGC
AGTGGCAACAACAAAAATGGCAGCAGGAGCACCACTCCCATCCCTCCCAA
TCCCACGGCAAATGCCACGCCCGAAGAGCTGTTTTTCATGCAGCCCACAA
GCGTCAAGCAGGCCGAAGCCGCCAAGGAAGAGCAAGAGCAAGAGGCGCTC
CGTCACAAGTTGCTCCCTCGCCTGGACGCTTGGGCACGAGATCCCCCCCA
AGCAGGTGGTAAATTACGGAATGTTCGCACCTTGCTCTCGACCATGCACA
CGGTCTTGTGGCCGGGGTGTGTGA
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Synonyms
Publications