NO12G02550, NO12G02550 (gene) Nannochloropsis oceanica

Overview
NameNO12G02550
Unique NameNO12G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1407
Alignment locationchr12:726265..727671 +

Link to JBrowse

Properties
Property NameValue
DescriptionPhosphatidylinositol 4-kinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:726265..727671 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO12G02550 vs. NCBI_GenBank
Match: EWM25780.1 (phosphatidylinositol 4-kinase [Nannochloropsis gaditana])

HSP 1 Score: 599.7 bits (1545), Expect = 7.600e-168
Identity = 302/418 (72.25%), Postives = 324/418 (77.51%), Query Frame = 0
Query:    1 MFSLLPFLVYWLAVQEGLRVGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFDADAMALTPAVFDSQIEECMPQIATLLACTKVDGPPDTMRRNRWIEQQVIEKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAHLMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGVSSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNPNWLNEEHIARQCPEVAAHSVHLPMLDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGSARLYTNGATLGCSIWDALDQRQFPESLLYPDDHPAMRFPMKPFLFNNDYDDDQDYFLDLHATPLSPSY 419
            M+SLLPFLVYWLAVQEGLRVGGP                               G FDADAMA+TPAVFDSQIEEC+PQIATLLACTKVDGPPD MRRNRWIEQQVIEKCTSNVHLGLKL+WLLRAALGHLEIPTRRGLPQITGERQRAHLM+LLNTGE LAR G+QSPGCL  LRARYFAHCT FVAALVKLSF++KGVSS+RRLTAL QGIDRVN LLFRLMHTRGEEME                                              +P+WL EEHIARQCPEVAAHSVHLPMLDG++PIFRFLRLVS ECELLPSRERCPYMVVAELLQTERNTRCGSARLYT GATLGCS+WDALD R FPESLLYPDDHPAMR+P++PF+FNNDY+D+ DYFLDLHATP +P +
Sbjct:    1 MYSLLPFLVYWLAVQEGLRVGGP----GGPEGLRLSSGSRDAFLRDGFPSQHQLGGFDADAMAITPAVFDSQIEECIPQIATLLACTKVDGPPDAMRRNRWIEQQVIEKCTSNVHLGLKLFWLLRAALGHLEIPTRRGLPQITGERQRAHLMSLLNTGEILAREGQQSPGCLRPLRARYFAHCTTFVAALVKLSFDVKGVSSVRRLTALHQGIDRVNALLFRLMHTRGEEMEGGPDEASQSPQTPGSRPSASPPQRHGVSAVTGGGSAGASA------HPSWLTEEHIARQCPEVAAHSVHLPMLDGSSPIFRFLRLVSAECELLPSRERCPYMVVAELLQTERNTRCGSARLYTGGATLGCSVWDALDHRVFPESLLYPDDHPAMRYPVRPFVFNNDYNDEDDYFLDLHATPHAPPH 408          
BLAST of NO12G02550 vs. NCBI_GenBank
Match: CBJ28976.1 (similar to phosphatidylinositol 4-kinase III beta [Ectocarpus siliculosus])

HSP 1 Score: 107.5 bits (267), Expect = 1.200e-19
Identity = 104/322 (32.30%), Postives = 141/322 (43.79%), Query Frame = 0
Query:   70 DSQIEECMPQIATLLACTKVDGPPDTMRRNRWIEQQVI--------EKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAHLMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGVSSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNPNWLNEEHIARQCPEVAAHSVHLPM------LDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGSARLYTNGATLGCSIWDALDQRQFPESL 378
            DS +E  +PQ+A +L    V        RN  I Q V+        ++C  N+ L +++ W         E   RR  PQ  G    A      N+    A  G   P  L   R  Y A    FV  L+ +   LK +   RRL+AL   + RVN +L R M TRG   E                                  XXXXXXXXXXX    WLNE  +A  CPEV+ H++HLP+         A    R LRL    C +LPS+E+ PY+VVAE+LQT  +    S RLY  G + G +  D ++++  P++L
Sbjct:   57 DSDVEFFVPQLAAVLMSKGVPS------RNVHITQLVVGRLSANLQQRCFGNIGLAVQMMW-------QFEAVGRR--PQEDGPSWNA----FKNSYVLAALNGDNLPEQLRMQRRAYCADSMAFVDTLMDIGDSLKKLPIKRRLSALDNELGRVNRMLLRRMQTRGASFE----------------------------IPGDTVXXXXXXXXXXXXXXEWLNEHDVAAVCPEVSHHAIHLPIKVLKPGQPAATRAVRVLRLCRELCRVLPSKEKAPYLVVAEVLQT--SFSYASDRLYLEGGSAGVTCEDVVNKKTLPQAL 329          
The following BLAST results are available for this feature:
BLAST of NO12G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25780.17.600e-16872.25phosphatidylinositol 4-kinase [Nannochloropsis gad... [more]
CBJ28976.11.200e-1932.30similar to phosphatidylinositol 4-kinase III beta ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010192NSK010192Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02550.1NO12G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592467gene_5423Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100176g4gene4740Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02550.1NO12G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02550 ID=NO12G02550|Name=NO12G02550|organism=Nannochloropsis oceanica|type=gene|length=1407bp
ATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAGG
CCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGTG
GTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACTG
CAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAGC
GGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTGC
TGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCGA
TGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGGG
GCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATTC
CGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCAT
TTGATGAACCTTTTGAATACGGGTGAGACACTTGCAAGAGGAGGGAGGCA
GTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGTA
CCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGTG
TCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCAA
CACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGAG
GGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCAA
CGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATGC
CGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTGA
ACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGTG
CACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGACT
TGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTACA
TGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTCT
GCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACGC
CCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCACC
CCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGAC
GACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCTC
CTACTCCTCTTCCTCCCATCGCCCCCCCCCCCTCTCCGGCAGCAGCAGCA
GCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGAGG
AAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGCGG
GCCGTAA
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protein sequence of NO12G02550.1

>NO12G02550.1-protein ID=NO12G02550.1-protein|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MFSLLPFLVYWLAVQEGLRVGGPGGPGGGQGLSGGSLGGFMGSGGGVSPL
QGPLGSFDADAMALTPAVFDSQIEECMPQIATLLACTKVDGPPDTMRRNR
WIEQQVIEKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAH
LMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGV
SSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEGGSEEASSQQQPFYARGQ
RPPPSYQPPPPPLPPYAGGSTGSTANSNNPNWLNEEHIARQCPEVAAHSV
HLPMLDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGS
ARLYTNGATLGCSIWDALDQRQFPESLLYPDDHPAMRFPMKPFLFNNDYD
DDQDYFLDLHATPLSPSYSSSSHRPPPLSGSSSSNNNNIPPSLPSLPPRR
KLSQPWIRVSLTLAQGGP*
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Synonyms
Publications