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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:726265..727671 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02550.1 vs.
Match: EWM25780.1 (phosphatidylinositol 4-kinase [Nannochloropsis gaditana]) HSP 1 Score: 645.2 bits (1663), Expect = 1.600e-181 Identity = 342/451 (75.83%), Postives = 367/451 (81.37%), Query Frame = 0
Query: 1 MFSLLPFLVYWLAVQEGLRVGGPGGPGGGQGLSGGSLGGFMGSGGGVSPLQGPLGSFDADAMALTPAVFDSQIEECMPQIATLLACTKVDGPPDTMRRNRWIEQQVIEKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAHLMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGVSSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEGGSEEASSQQQPFYARGQRPPPSYQPPPPPLPPYAGGSTGSTANSNNPNWLNEEHIARQCPEVAAHSVHLPMLDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGSARLYTNGATLGCSIWDALDQRQFPESLLYPDDHPAMRFPMKPFLFNNDYDDDQDYFLDLHATPLSPSYSSSS---HRPPPLSGSSSSNNNNIPPSLPSLPP 449
M+SLLPFLVYWLAVQEGLRVGGPGGP G + LS GS F+ G P Q LG FDADAMA+TPAVFDSQIEEC+PQIATLLACTKVDGPPD MRRNRWIEQQVIEKCTSNVHLGLKL+WLLRAALGHLEIPTRRGLPQITGERQRAHLM+LLNTGE LAR G+QSPGCL LRARYFAHCT FVAALVKLSF++KGVSS+RRLTAL QGIDRVN LLFRLMHTRGEEMEGG +EAS Q G RP S PP A GS S +P+WL EEHIARQCPEVAAHSVHLPMLDG++PIFRFLRLVS ECELLPSRERCPYMVVAELLQTERNTRCGSARLYT GATLGCS+WDALD R FPESLLYPDDHPAMR+P++PF+FNNDY+D+ DYFLDLHATP +P + S S HRP P PP P PP
Sbjct: 1 MYSLLPFLVYWLAVQEGLRVGGPGGPEGLR-LSSGSRDAFLRDG---FPSQHQLGGFDADAMAITPAVFDSQIEECIPQIATLLACTKVDGPPDAMRRNRWIEQQVIEKCTSNVHLGLKLFWLLRAALGHLEIPTRRGLPQITGERQRAHLMSLLNTGEILAREGQQSPGCLRPLRARYFAHCTTFVAALVKLSFDVKGVSSVRRLTALHQGIDRVNALLFRLMHTRGEEMEGGPDEASQSPQ---TPGSRPSAS---PPQRHGVSAVTGGGSAGASAHPSWLTEEHIARQCPEVAAHSVHLPMLDGSSPIFRFLRLVSAECELLPSRERCPYMVVAELLQTERNTRCGSARLYTGGATLGCSVWDALDHRVFPESLLYPDDHPAMRYPVRPFVFNNDYNDEDDYFLDLHATPHAPPHHSRSLPHHRPLP------------PPQAPLPPP 429
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02550.1 ID=NO12G02550.1|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp ATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAGG CCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGTG GTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACTG CAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAGC GGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTGC TGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCGA TGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGGG GCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATTC CGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCAT TTGATGAACCTTTTGAATACGGGTGAGACACTTGCAAGAGGAGGGAGGCA GTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGTA CCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGTG TCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCAA CACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGAG GGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCAA CGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATGC CGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTGA ACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGTG CACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGACT TGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTACA TGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTCT GCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACGC CCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCACC CCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGAC GACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCTC CTACTCCTCTTCCTCCCATCGCCCCCCCCCCCTCTCCGGCAGCAGCAGCA GCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGAGG AAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGCGG GCCGTAA back to topprotein sequence of NO12G02550.1 >NO12G02550.1-protein ID=NO12G02550.1-protein|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp MFSLLPFLVYWLAVQEGLRVGGPGGPGGGQGLSGGSLGGFMGSGGGVSPL QGPLGSFDADAMALTPAVFDSQIEECMPQIATLLACTKVDGPPDTMRRNR WIEQQVIEKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAH LMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGV SSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEGGSEEASSQQQPFYARGQ RPPPSYQPPPPPLPPYAGGSTGSTANSNNPNWLNEEHIARQCPEVAAHSV HLPMLDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGS ARLYTNGATLGCSIWDALDQRQFPESLLYPDDHPAMRFPMKPFLFNNDYD DDQDYFLDLHATPLSPSYSSSSHRPPPLSGSSSSNNNNIPPSLPSLPPRR KLSQPWIRVSLTLAQGGP* back to topmRNA from alignment at chr12:726265..727671+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02550.1 ID=NO12G02550.1|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp|location=Sequence derived from alignment at chr12:726265..727671+ (Nannochloropsis oceanica) ATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAGG
CCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGTG
GTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACTG
CAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAGC
GGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTGC
TGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCGA
TGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGGG
GCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATTC
CGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCAT
TTGATGAACCTTTTGAATACGGGTGAGACACTTGCAAGAGGAGGGAGGCA
GTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGTA
CCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGTG
TCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCAA
CACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGAG
GGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCAA
CGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATGC
CGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTGA
ACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGTG
CACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGACT
TGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTACA
TGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTCT
GCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACGC
CCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCACC
CCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGAC
GACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCTC
CTACTCCTCTTCCTCCCATCGCCCCCCCCCCCTCTCCGGCAGCAGCAGCA
GCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGAGG
AAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGCGG
GCCGTAA back to topCoding sequence (CDS) from alignment at chr12:726265..727671+ >NO12G02550.1 ID=NO12G02550.1|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr12:726265..727671+ (Nannochloropsis oceanica) ATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAGG CCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGTG GTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACTG CAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAGC GGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTGC TGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCGA TGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGGG GCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATTC CGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCAT TTGATGAACCTTTTGAATACGGGTGAGACACTTGCAAGAGGAGGGAGGCA GTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGTA CCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGTG TCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCAA CACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGAG GGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCAA CGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATGC CGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTGA ACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGTG CACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGACT TGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTACA TGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTCT GCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACGC CCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCACC CCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGAC GACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCTC CTACTCCTCTTCCTCCCATCGCCCCCCCCCCCTCTCCGGCAGCAGCAGCA GCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGAGG AAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGCGG GCCGTAA back to top
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