NO12G02550.1, NO12G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02550.1
Unique NameNO12G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1407
Alignment locationchr12:726265..727671 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:726265..727671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G02550.1 vs.
Match: EWM25780.1 (phosphatidylinositol 4-kinase [Nannochloropsis gaditana])

HSP 1 Score: 645.2 bits (1663), Expect = 1.600e-181
Identity = 342/451 (75.83%), Postives = 367/451 (81.37%), Query Frame = 0
Query:    1 MFSLLPFLVYWLAVQEGLRVGGPGGPGGGQGLSGGSLGGFMGSGGGVSPLQGPLGSFDADAMALTPAVFDSQIEECMPQIATLLACTKVDGPPDTMRRNRWIEQQVIEKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAHLMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGVSSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEGGSEEASSQQQPFYARGQRPPPSYQPPPPPLPPYAGGSTGSTANSNNPNWLNEEHIARQCPEVAAHSVHLPMLDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGSARLYTNGATLGCSIWDALDQRQFPESLLYPDDHPAMRFPMKPFLFNNDYDDDQDYFLDLHATPLSPSYSSSS---HRPPPLSGSSSSNNNNIPPSLPSLPP 449
            M+SLLPFLVYWLAVQEGLRVGGPGGP G + LS GS   F+  G    P Q  LG FDADAMA+TPAVFDSQIEEC+PQIATLLACTKVDGPPD MRRNRWIEQQVIEKCTSNVHLGLKL+WLLRAALGHLEIPTRRGLPQITGERQRAHLM+LLNTGE LAR G+QSPGCL  LRARYFAHCT FVAALVKLSF++KGVSS+RRLTAL QGIDRVN LLFRLMHTRGEEMEGG +EAS   Q     G RP  S   PP      A    GS   S +P+WL EEHIARQCPEVAAHSVHLPMLDG++PIFRFLRLVS ECELLPSRERCPYMVVAELLQTERNTRCGSARLYT GATLGCS+WDALD R FPESLLYPDDHPAMR+P++PF+FNNDY+D+ DYFLDLHATP +P + S S   HRP P            PP  P  PP
Sbjct:    1 MYSLLPFLVYWLAVQEGLRVGGPGGPEGLR-LSSGSRDAFLRDG---FPSQHQLGGFDADAMAITPAVFDSQIEECIPQIATLLACTKVDGPPDAMRRNRWIEQQVIEKCTSNVHLGLKLFWLLRAALGHLEIPTRRGLPQITGERQRAHLMSLLNTGEILAREGQQSPGCLRPLRARYFAHCTTFVAALVKLSFDVKGVSSVRRLTALHQGIDRVNALLFRLMHTRGEEMEGGPDEASQSPQ---TPGSRPSAS---PPQRHGVSAVTGGGSAGASAHPSWLTEEHIARQCPEVAAHSVHLPMLDGSSPIFRFLRLVSAECELLPSRERCPYMVVAELLQTERNTRCGSARLYTGGATLGCSVWDALDHRVFPESLLYPDDHPAMRYPVRPFVFNNDYNDEDDYFLDLHATPHAPPHHSRSLPHHRPLP------------PPQAPLPPP 429          
The following BLAST results are available for this feature:
BLAST of NO12G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25780.11.600e-18175.83phosphatidylinositol 4-kinase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02550NO12G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02550.1NO12G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02550.1.cds1NO12G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02550.1 ID=NO12G02550.1|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp
ATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAGG
CCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGTG
GTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACTG
CAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAGC
GGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTGC
TGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCGA
TGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGGG
GCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATTC
CGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCAT
TTGATGAACCTTTTGAATACGGGTGAGACACTTGCAAGAGGAGGGAGGCA
GTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGTA
CCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGTG
TCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCAA
CACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGAG
GGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCAA
CGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATGC
CGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTGA
ACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGTG
CACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGACT
TGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTACA
TGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTCT
GCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACGC
CCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCACC
CCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGAC
GACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCTC
CTACTCCTCTTCCTCCCATCGCCCCCCCCCCCTCTCCGGCAGCAGCAGCA
GCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGAGG
AAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGCGG
GCCGTAA
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protein sequence of NO12G02550.1

>NO12G02550.1-protein ID=NO12G02550.1-protein|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MFSLLPFLVYWLAVQEGLRVGGPGGPGGGQGLSGGSLGGFMGSGGGVSPL
QGPLGSFDADAMALTPAVFDSQIEECMPQIATLLACTKVDGPPDTMRRNR
WIEQQVIEKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAH
LMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGV
SSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEGGSEEASSQQQPFYARGQ
RPPPSYQPPPPPLPPYAGGSTGSTANSNNPNWLNEEHIARQCPEVAAHSV
HLPMLDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGS
ARLYTNGATLGCSIWDALDQRQFPESLLYPDDHPAMRFPMKPFLFNNDYD
DDQDYFLDLHATPLSPSYSSSSHRPPPLSGSSSSNNNNIPPSLPSLPPRR
KLSQPWIRVSLTLAQGGP*
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mRNA from alignment at chr12:726265..727671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02550.1 ID=NO12G02550.1|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp|location=Sequence derived from alignment at chr12:726265..727671+ (Nannochloropsis oceanica)
ATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAGG CCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGTG GTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACTG CAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAGC GGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTGC TGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCGA TGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGGG GCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATTC CGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCAT TTGATGAACCTTTTGAATACGGGTGAGACACTTGCAAGAGGAGGGAGGCA GTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGTA CCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGTG TCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCAA CACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGAG GGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCAA CGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATGC CGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTGA ACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGTG CACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGACT TGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTACA TGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTCT GCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACGC CCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCACC CCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGAC GACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCTC CTACTCCTCTTCCTCCCATCGCCCCCCCCCCCTCTCCGGCAGCAGCAGCA GCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGAGG AAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGCGG GCCGTAA
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Coding sequence (CDS) from alignment at chr12:726265..727671+

>NO12G02550.1 ID=NO12G02550.1|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr12:726265..727671+ (Nannochloropsis oceanica)
ATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAGG
CCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGTG
GTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACTG
CAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAGC
GGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTGC
TGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCGA
TGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGGG
GCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATTC
CGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCAT
TTGATGAACCTTTTGAATACGGGTGAGACACTTGCAAGAGGAGGGAGGCA
GTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGTA
CCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGTG
TCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCAA
CACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGAG
GGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCAA
CGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATGC
CGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTGA
ACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGTG
CACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGACT
TGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTACA
TGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTCT
GCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACGC
CCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCACC
CCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGAC
GACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCTC
CTACTCCTCTTCCTCCCATCGCCCCCCCCCCCTCTCCGGCAGCAGCAGCA
GCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGAGG
AAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGCGG
GCCGTAA
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Synonyms
Publications