NO12G02420, NO12G02420 (gene) Nannochloropsis oceanica

Overview
NameNO12G02420
Unique NameNO12G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1734
Alignment locationchr12:696393..698126 -

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Properties
Property NameValue
DescriptionGlycine cleavage system regulatory protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:696393..698126 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002912ACT_dom
Homology
BLAST of NO12G02420 vs. NCBI_GenBank
Match: EWM25851.1 (glycine cleavage system regulatory protein [Nannochloropsis gaditana])

HSP 1 Score: 370.5 bits (950), Expect = 3.500e-99
Identity = 185/219 (84.47%), Postives = 203/219 (92.69%), Query Frame = 0
Query:    1 MLSTLASSLKRAAAQPITLRMAGLTLARASMMTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKPVPAND 220
            MLST +S+LKRAA  P  + M  + LARA M+++SRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQIT+KL KVGGMSVITHPVTAERANQ+VPKP WKA F+VEGVNHPGLVYKVTELFFARGLRVEKLHT+TKIAPFGGTVLFLMDGTIIS+K IDF +LKEAS+SLSSFLGIDL+LKP+P ++
Sbjct:   50 MLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE 268          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: GAQ88738.1 (hypothetical protein KFL_004550090 [Klebsormidium nitens])

HSP 1 Score: 111.3 bits (277), Expect = 3.800e-21
Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 0
Query:   46 ILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRV---AAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDL 211
            ++TA+GPDR GIV  ++K +L+  G+++ESRM R+  DFS++M V   A     A++I   LS + G+ V T   T+E  + +          S+ G ++PGLVY VTE   +  + +E L T T+ APFGGT LF+MDG +     I    L    D+L + LG+D+
Sbjct:   97 VMTASGPDRPGIVSRLSKRLLELGGNVEESRMARLAGDFSILMLVTVDATVPSRAEEIRSSLSDIEGLHVFTR-WTSEDPSYLKKLQKRFRRISLRGADNPGLVYNVTEYLASLHVNIESLETGTEEAPFGGTTLFMMDGIVAIPPDISTARLASDLDALQTTLGVDI 263          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: GAX11367.1 (hypothetical protein FisN_22Lh037 [Fistulifera solaris])

HSP 1 Score: 106.7 bits (265), Expect = 9.500e-20
Identity = 56/186 (30.11%), Postives = 101/186 (54.30%), Query Frame = 0
Query:   34 ISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAI----DFKELKEASDSLSSFLGIDLELKPV 216
            + R    + +  I+ A G DR GIV DI  +V+D  G++ +S+  ++G  FSLMM V+ P  +   +  +L  +  M+      +   ++Q  P+  + A F++EG +HPG+V+K+T      GL ++K+ T+ +IAP+GG++LF M G   +   +    D  ++K+  + L   L  ++ L  V
Sbjct:   17 LKRVWLSSSTDLIINAVGKDRLGIVSDITGIVIDAGGNVGDSQAAKLGPHFSLMMMVSVPTEELTSLQSRLQSMPDMNATVFE-SKLGSSQFTPQIGYSAYFTLEGADHPGIVHKITAALAKAGLSIDKMETDQEIAPYGGSMLFKMRGVATAAAPLAAGFDAHKIKQEMEELGDTLNCEVSLTDV 201          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: GAX20469.1 (hypothetical protein FisN_22Hh037 [Fistulifera solaris])

HSP 1 Score: 105.9 bits (263), Expect = 1.600e-19
Identity = 60/194 (30.93%), Postives = 105/194 (54.12%), Query Frame = 0
Query:   25 TLAR--ASMMTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAI----DFKELKEASDSLSSFLGIDLEL 213
            TLAR       + RA   + +  I+ A G DR GIV DI  +V+D  G++ +S+  ++G  FSLMM V+ P  +   +  +L  +  M+      +   ++Q  P+  + A F++EG +HPG+V+K+T      GL ++K+ T+ +IAP+GG++LF M G   +   +    D  ++K+  + L   L  ++ L
Sbjct:    6 TLARNWQRQPALKRAWLSSSTDLIINAVGKDRLGIVSDITGMVIDAGGNVGDSQAAKLGPHFSLMMMVSVPTEELTNLQSRLQSMPDMNATVFE-SKLGSSQFTPQIGYSAYFTLEGADHPGIVHKITAALAKAGLSIDKMETDQEIAPYGGSMLFKMRGVATAAAPLAAGFDAHKIKQEMEELGDTLNCEVTL 198          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: XP_002179786.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48772.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 103.6 bits (257), Expect = 8.000e-19
Identity = 64/207 (30.92%), Postives = 98/207 (47.34%), Query Frame = 0
Query:   13 AAQPITLRMAGLTLARASMMTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIIS----EKAIDFKELKEASDSLSSFLGIDLELKPV 216
            AA  I  R       + S  + +       S  I+ A G DR GIV DI  +V+++ G++ ES+  R+G  FSLMM V+ P    + +  KL  +  M+       A  +    P   +   F + G ++PG+V+K+T      GL +EKL T+ +IAP GGTVLF M G   +        D  ++K     L   L  D+ ++ V
Sbjct:    3 AASRILTRPVARAFGQPSAYSFTTLGNGGTSDLIINAVGSDRLGIVSDITGMVIEHGGNVGESQAARLGSHFSLMMLVSVPSEHLEGLQTKLRNLPDMNAAIFEAQA-GSKPTTPATGYSGYFRLAGADNPGIVHKITSALVKHGLSIEKLGTDKEIAPHGGTVLFKMTGVASAAAPLANGFDIAKIKSELIELGDSLNCDVSMEDV 208          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: XP_002297198.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86523.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 100.9 bits (250), Expect = 5.200e-18
Identity = 65/220 (29.55%), Postives = 111/220 (50.45%), Query Frame = 0
Query:    2 LSTLASSLKRAAAQPITLRMAGLTLARASMMTISRASTPAD-SHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSK-VGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAI----DFKELKEASDSLSSFLGIDLELKPV 216
            + T+ S   R  A PI ++++  T    +  T    S+P++  H ++   G DR GIV D+ +++ ++ G++ ESR   +G  FSLMM V   + D   +   L + V GMS         R  ++ PK  +   F + G ++PGLV+K+T       L +  + T  + APFGGT LF M+G  ++ + +    D+K++KE    +   +  D+E   V
Sbjct:    6 IRTVISPSPRLVA-PIGVKLSASTTNATNTSTTRPFSSPSNKKHLVINTVGTDRPGIVADVTRIITNHGGNVGESRAQLLGGHFSLMMLVEIAEGDMKSLHGDLERGVEGMSTTCFDAVDPRLVEVSPKIGFAGHFKLSGADNPGLVHKLTSALARNSLTIGSMQTFQEEAPFGGTELFTMEGKAVAYQPLASNFDWKKIKEELVEMGESMNCDVEFSDV 224          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: OMJ87560.1 (hypothetical protein SteCoe_10740 [Stentor coeruleus])

HSP 1 Score: 100.1 bits (248), Expect = 8.900e-18
Identity = 58/187 (31.02%), Postives = 103/187 (55.08%), Query Frame = 0
Query:   32 MTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPD----ADQITRKLSKVGGMSVIT--HPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLEL 213
            M + R  T A    ILT TG DR G+V DI  ++ D +G+I +SRM ++  +FSLM+ +  P+ +     D++ +    +G    +T  HP  A    + +    +K    + G + PG+VY +T++  ++G+ ++K+ T +  AP GGT LF +   +   K IDF + +E+  SL S L +++++
Sbjct:    1 MLLRRLFTSAKRKLILTGTGVDRIGLVKDITGIIFDEDGNIADSRMSKLENNFSLMVLIDIPEKNYQSFQDKVKKSREDLGIHLDVTDLHPFPA----KTIEIQDYKVFIELIGDDQPGIVYSLTQILASQGVNIDKIDTFSFSAPMGGTTLFKVKSRVTVNKIIDFDKFQESLKSLESSLVVEIKV 183          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: WP_054892180.1 (MULTISPECIES: glycine cleavage system protein R [Pseudomonas])

HSP 1 Score: 98.2 bits (243), Expect = 3.400e-17
Identity = 57/172 (33.14%), Postives = 94/172 (54.65%), Query Frame = 0
Query:   44 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAI-FSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKP 215
            H +LT   PD+AG V  IA+ + D++G+  ESRM RM   F+ ++RVA P  + D++   L K+G   +    + AE  + I P   WK I   + G + PG+V  +T L   +G+ +E+L TE + AP     LF  D  +     +   +L++  +SL+  L ++L+L+P
Sbjct:    3 HLVLTVIAPDKAGQVDRIAQCISDHSGNWLESRMSRMAGQFAGILRVAVPAENYDELVESLQKLGDHGI--RVLIAE--SGIEPSCTWKPIAMELVGNDRPGIVRDITRLLAEQGVNLERLSTEVRPAPMSSEPLFHADALLALPLTLSLNDLQQKLESLADDLMVELKLRP 170          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: WP_028689075.1 (MULTISPECIES: glycine cleavage system protein R [Pseudomonas] >ODB39339.1 glycine cleavage system protein R [Pseudomonas mosselii] >OWQ34999.1 glycine cleavage system protein R [Pseudomonas sp. DrBHI1])

HSP 1 Score: 97.4 bits (241), Expect = 5.700e-17
Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = 0
Query:   44 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAI-FSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKP 215
            H +LT   PD+AG V  IA+ + D+NG+  ESRM RM   F+ ++RVA P  +  ++   L K+G   +    + AE  + I P   WK I   + G + PG+V  +T L   +G+ VE+L TE + AP     LF  D  +     +  ++L+   +SL+  L ++L L+P
Sbjct:    3 HLVLTVIAPDKAGQVERIAQCIADHNGNWLESRMSRMAGQFAGILRVAVPAENYAELVESLQKLGDHGI--RVLIAE--SGIEPSCTWKPIAMELVGNDRPGIVRDITRLLAEQGVNVERLSTEVRPAPMSSEPLFHADALLALPLTLSLEDLQARLESLADDLMVELRLRP 170          
BLAST of NO12G02420 vs. NCBI_GenBank
Match: WP_065864528.1 (glycine cleavage system protein R [Pseudomonas putida] >OCT21863.1 glycine cleavage system protein R [Pseudomonas putida] >OCT26466.1 glycine cleavage system protein R [Pseudomonas putida] >OCT30821.1 glycine cleavage system protein R [Pseudomonas putida] >OCT35239.1 glycine cleavage system protein R [Pseudomonas putida])

HSP 1 Score: 97.4 bits (241), Expect = 5.700e-17
Identity = 57/172 (33.14%), Postives = 94/172 (54.65%), Query Frame = 0
Query:   44 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAI-FSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKP 215
            H +LT   PD+AG V  IA+ + D++G+  ESRM RM   F+ ++RVA P  + D++   L K+G   +    + AE  + I P   WK I   + G + PG+V  +T L   +G+ +E+L TE + AP     LF  D  +     +   +L++  +SL+  L ++L+L+P
Sbjct:    3 HLVLTVIAPDKAGQVERIAQCISDHSGNWLESRMSRMAGQFAGILRVAVPAENYDELVESLQKLGEHDI--RVLIAE--SGIEPSCTWKPIAMELVGNDRPGIVRDITRLLAEQGVNLERLSTEVRPAPMSSEPLFHADALLALPLTLSLDDLQQRLESLADDLMVELKLRP 170          
The following BLAST results are available for this feature:
BLAST of NO12G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25851.13.500e-9984.47glycine cleavage system regulatory protein [Nannoc... [more]
GAQ88738.13.800e-2138.10hypothetical protein KFL_004550090 [Klebsormidium ... [more]
GAX11367.19.500e-2030.11hypothetical protein FisN_22Lh037 [Fistulifera sol... [more]
GAX20469.11.600e-1930.93hypothetical protein FisN_22Hh037 [Fistulifera sol... [more]
XP_002179786.18.000e-1930.92predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002297198.15.200e-1829.55predicted protein [Thalassiosira pseudonana CCMP13... [more]
OMJ87560.18.900e-1831.02hypothetical protein SteCoe_10740 [Stentor coerule... [more]
WP_054892180.13.400e-1733.14MULTISPECIES: glycine cleavage system protein R [P... [more]
WP_028689075.15.700e-1733.72MULTISPECIES: glycine cleavage system protein R [P... [more]
WP_065864528.15.700e-1733.14glycine cleavage system protein R [Pseudomonas put... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010178NSK010178Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02420.1NO12G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592436gene_5407Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g72gene4726Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02420.1NO12G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02420 ID=NO12G02420|Name=NO12G02420|organism=Nannochloropsis oceanica|type=gene|length=1734bp
GAGACGGGGAAAAGGGGCGAGTAGTGGCATGAGGATAGAGAGACAAAAAT
CGAAACGAGCAGAGCCTGGTTGAGGCGGTGGAGATGTAGTGGATGAGAAA
GACGTAGTGGGTGGAATAGAGAGGAGAGGAGGAGGAAGTGGGCACCGAGT
CTAGCGAGCAGATCCCGTCGTTCTTTGTTGCAATTTCCAGAGCACTCAAA
CTCACGCGGCAAGCAAGTCTAAGGAGTCTCACTCATTGTGGGACAAGCTT
AGCTCCTTGCCCGGTAGCACTGCGCATACTTTTCCTCTGTTTGCTGCAGC
ATCCACTTCTAAACTCACAACACTCTCCCCTAAGAGGCTTACGCGAACAA
CAGAAGCCTCCTCTTCAACCTCCAACTCCACGGCCTCAACCCATAATAAG
CTAAACATGCTCTCCACTTTGGCATCGAGTTTGAAACGAGgtacgtcgac
tttgtggatgaagagatcccagacccttgtgtggccatgcgggttccata
ccgattcaatctcttttgcacctccccccatgtgtaattctgtcccattg
cctggcaaacaagcgacatgttttcaactccctttccacgccattggtgt
ttctgccatgtccagctcgtaaccgatgtggcggggctcagattccgatt
accatttatatcccccatctcccctccgaccgcggccgcacctatttcgg
gctgcttggctaattgattgaaagggtcaaatgattctatcctcatttgc
tgggaagttttcctaaatatttacaattacctcaatctgtttatcctgtt
gccctctccctccctttgctctccgcccatctccttccgcagCCGCCGCG
CAGCCCATCACCTTACGGATGGCCGGCTTGACTCTTGCGCGGGCCAGTAT
GATGACCATCTCCCGCGCCTCGACGCCCGCCGACTCGCACTTCATTCTAA
CCGCCACGGGTCCTGACCGAGCAGGTATTGTGTTTGATATTGCTAAGTTG
GTTTTGGACAATAACGGGGATATCCAAGAATCCCGGATGATGCGCATGGG
TTGTGACTTCTCCTTAATGATGCGCGTTGCCGCCCCCAAACCTGATGCCG
ATCAAATCACTCGAAAATTGAGCAAAGTCGGCGGCATGTCTGTCATTACC
CACCCGGTGACTGCCGAAAGAGCTAATCAGATCGTTCCCAAGCCTGTGTG
GAAGGCGATTTTTTCGGTTGAGGGTGTGAACCATCCTGGCTTGGTTTACA
AAGTCACTGAGTTGTTTTTTGCGCGGGGCTTGCGCGTGGAAAAGCTACAT
ACCGAGACGAAAATTGCGCCATTCGGGGGCACGGTCCTATTTTTGATGGA
TGGGACAATCATCTCGGAGAAGGCGATTGATTTTAAAGAGTTGAAGGAGG
CGAGTGACAGCTTGAGCTCGTTTTTGGGGATCGACTTGGAGTTGAAGCCA
GTGCCGGCGAATGATCAGTAGGAAGGCGGGAGGCTAGGTGGAAGGGAGGG
TAGTGGCGATGGTGGCGTACAGTGACTTAATGGGGAGGAGCAAATCAATG
ATGCCTTTTTTGGCATTTTTCTATTGTCTATCTGCGGTACTACAATTCGT
TGTTATACAGTCACGGATGGAAGGAAGAAGCAGCAGTAGAGTAGGGGATA
AACCAATGAGATAAGGGAGCTGATGTAACGAGACCAGGACGCCTGAAATT
AAAGATAGAAAAACCACAAGTAGAGCCAGGAGCG
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protein sequence of NO12G02420.1

>NO12G02420.1-protein ID=NO12G02420.1-protein|Name=NO12G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MLSTLASSLKRAAAQPITLRMAGLTLARASMMTISRASTPADSHFILTAT
GPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQI
TRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVT
ELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASD
SLSSFLGIDLELKPVPANDQ*
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Synonyms
Publications