NO12G02420.1, NO12G02420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02420.1
Unique NameNO12G02420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1332
Alignment locationchr12:696393..698126 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:696393..698126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02420.1 vs.
Match: EWM25851.1 (glycine cleavage system regulatory protein [Nannochloropsis gaditana])

HSP 1 Score: 370.5 bits (950), Expect = 3.500e-99
Identity = 185/219 (84.47%), Postives = 203/219 (92.69%), Query Frame = 0 
Query:    1 MLSTLASSLKRAAAQPITLRMAGLTLARASMMTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKPVPAND 220
            MLST +S+LKRAA  P  + M  + LARA M+++SRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQIT+KL KVGGMSVITHPVTAERANQ+VPKP WKA F+VEGVNHPGLVYKVTELFFARGLRVEKLHT+TKIAPFGGTVLFLMDGTIIS+K IDF +LKEAS+SLSSFLGIDL+LKP+P ++
Sbjct:   50 MLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE 268
The following BLAST results are available for this feature:
BLAST of NO12G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25851.13.500e-9984.47glycine cleavage system regulatory protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02420NO12G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02420.1NO12G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02420.1.cds1NO12G02420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02420.1.cds2NO12G02420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02420.1 ID=NO12G02420.1|Name=NO12G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
GAGACGGGGAAAAGGGGCGAGTAGTGGCATGAGGATAGAGAGACAAAAAT
CGAAACGAGCAGAGCCTGGTTGAGGCGGTGGAGATGTAGTGGATGAGAAA
GACGTAGTGGGTGGAATAGAGAGGAGAGGAGGAGGAAGTGGGCACCGAGT
CTAGCGAGCAGATCCCGTCGTTCTTTGTTGCAATTTCCAGAGCACTCAAA
CTCACGCGGCAAGCAAGTCTAAGGAGTCTCACTCATTGTGGGACAAGCTT
AGCTCCTTGCCCGGTAGCACTGCGCATACTTTTCCTCTGTTTGCTGCAGC
ATCCACTTCTAAACTCACAACACTCTCCCCTAAGAGGCTTACGCGAACAA
CAGAAGCCTCCTCTTCAACCTCCAACTCCACGGCCTCAACCCATAATAAG
CTAAACATGCTCTCCACTTTGGCATCGAGTTTGAAACGAGCCGCCGCGCA
GCCCATCACCTTACGGATGGCCGGCTTGACTCTTGCGCGGGCCAGTATGA
TGACCATCTCCCGCGCCTCGACGCCCGCCGACTCGCACTTCATTCTAACC
GCCACGGGTCCTGACCGAGCAGGTATTGTGTTTGATATTGCTAAGTTGGT
TTTGGACAATAACGGGGATATCCAAGAATCCCGGATGATGCGCATGGGTT
GTGACTTCTCCTTAATGATGCGCGTTGCCGCCCCCAAACCTGATGCCGAT
CAAATCACTCGAAAATTGAGCAAAGTCGGCGGCATGTCTGTCATTACCCA
CCCGGTGACTGCCGAAAGAGCTAATCAGATCGTTCCCAAGCCTGTGTGGA
AGGCGATTTTTTCGGTTGAGGGTGTGAACCATCCTGGCTTGGTTTACAAA
GTCACTGAGTTGTTTTTTGCGCGGGGCTTGCGCGTGGAAAAGCTACATAC
CGAGACGAAAATTGCGCCATTCGGGGGCACGGTCCTATTTTTGATGGATG
GGACAATCATCTCGGAGAAGGCGATTGATTTTAAAGAGTTGAAGGAGGCG
AGTGACAGCTTGAGCTCGTTTTTGGGGATCGACTTGGAGTTGAAGCCAGT
GCCGGCGAATGATCAGTAGGAAGGCGGGAGGCTAGGTGGAAGGGAGGGTA
GTGGCGATGGTGGCGTACAGTGACTTAATGGGGAGGAGCAAATCAATGAT
GCCTTTTTTGGCATTTTTCTATTGTCTATCTGCGGTACTACAATTCGTTG
TTATACAGTCACGGATGGAAGGAAGAAGCAGCAGTAGAGTAGGGGATAAA
CCAATGAGATAAGGGAGCTGATGTAACGAGACCAGGACGCCTGAAATTAA
AGATAGAAAAACCACAAGTAGAGCCAGGAGCG
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protein sequence of NO12G02420.1

>NO12G02420.1-protein ID=NO12G02420.1-protein|Name=NO12G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MLSTLASSLKRAAAQPITLRMAGLTLARASMMTISRASTPADSHFILTAT
GPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQI
TRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVT
ELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASD
SLSSFLGIDLELKPVPANDQ*
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mRNA from alignment at chr12:696393..698126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02420.1 ID=NO12G02420.1|Name=NO12G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr12:696393..698126- (Nannochloropsis oceanica)
GAGACGGGGAAAAGGGGCGAGTAGTGGCATGAGGATAGAGAGACAAAAAT
CGAAACGAGCAGAGCCTGGTTGAGGCGGTGGAGATGTAGTGGATGAGAAA
GACGTAGTGGGTGGAATAGAGAGGAGAGGAGGAGGAAGTGGGCACCGAGT
CTAGCGAGCAGATCCCGTCGTTCTTTGTTGCAATTTCCAGAGCACTCAAA
CTCACGCGGCAAGCAAGTCTAAGGAGTCTCACTCATTGTGGGACAAGCTT
AGCTCCTTGCCCGGTAGCACTGCGCATACTTTTCCTCTGTTTGCTGCAGC
ATCCACTTCTAAACTCACAACACTCTCCCCTAAGAGGCTTACGCGAACAA
CAGAAGCCTCCTCTTCAACCTCCAACTCCACGGCCTCAACCCATAATAAG
CTAAACATGCTCTCCACTTTGGCATCGAGTTTGAAACGAGGTACGTCGAC
TTTGTGGATGAAGAGATCCCAGACCCTTGTGTGGCCATGCGGGTTCCATA
CCGATTCAATCTCTTTTGCACCTCCCCCCATGTGTAATTCTGTCCCATTG
CCTGGCAAACAAGCGACATGTTTTCAACTCCCTTTCCACGCCATTGGTGT
TTCTGCCATGTCCAGCTCGTAACCGATGTGGCGGGGCTCAGATTCCGATT
ACCATTTATATCCCCCATCTCCCCTCCGACCGCGGCCGCACCTATTTCGG
GCTGCTTGGCTAATTGATTGAAAGGGTCAAATGATTCTATCCTCATTTGC
TGGGAAGTTTTCCTAAATATTTACAATTACCTCAATCTGTTTATCCTGTT
GCCCTCTCCCTCCCTTTGCTCTCCGCCCATCTCCTTCCGCAGCCGCCGCG
CAGCCCATCACCTTACGGATGGCCGGCTTGACTCTTGCGCGGGCCAGTAT
GATGACCATCTCCCGCGCCTCGACGCCCGCCGACTCGCACTTCATTCTAA
CCGCCACGGGTCCTGACCGAGCAGGTATTGTGTTTGATATTGCTAAGTTG
GTTTTGGACAATAACGGGGATATCCAAGAATCCCGGATGATGCGCATGGG
TTGTGACTTCTCCTTAATGATGCGCGTTGCCGCCCCCAAACCTGATGCCG
ATCAAATCACTCGAAAATTGAGCAAAGTCGGCGGCATGTCTGTCATTACC
CACCCGGTGACTGCCGAAAGAGCTAATCAGATCGTTCCCAAGCCTGTGTG
GAAGGCGATTTTTTCGGTTGAGGGTGTGAACCATCCTGGCTTGGTTTACA
AAGTCACTGAGTTGTTTTTTGCGCGGGGCTTGCGCGTGGAAAAGCTACAT
ACCGAGACGAAAATTGCGCCATTCGGGGGCACGGTCCTATTTTTGATGGA
TGGGACAATCATCTCGGAGAAGGCGATTGATTTTAAAGAGTTGAAGGAGG
CGAGTGACAGCTTGAGCTCGTTTTTGGGGATCGACTTGGAGTTGAAGCCA
GTGCCGGCGAATGATCAGTAGGAAGGCGGGAGGCTAGGTGGAAGGGAGGG
TAGTGGCGATGGTGGCGTACAGTGACTTAATGGGGAGGAGCAAATCAATG
ATGCCTTTTTTGGCATTTTTCTATTGTCTATCTGCGGTACTACAATTCGT
TGTTATACAGTCACGGATGGAAGGAAGAAGCAGCAGTAGAGTAGGGGATA
AACCAATGAGATAAGGGAGCTGATGTAACGAGACCAGGACGCCTGAAATT
AAAGATAGAAAAACCACAAGTAGAGCCAGGAGCG
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Coding sequence (CDS) from alignment at chr12:696393..698126-

>NO12G02420.1 ID=NO12G02420.1|Name=NO12G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr12:696393..698126- (Nannochloropsis oceanica)
ATGCTCTCCACTTTGGCATCGAGTTTGAAACGAGCCGCCGCGCAGCCCAT
CACCTTACGGATGGCCGGCTTGACTCTTGCGCGGGCCAGTATGATGACCA
TCTCCCGCGCCTCGACGCCCGCCGACTCGCACTTCATTCTAACCGCCACG
GGTCCTGACCGAGCAGGTATTGTGTTTGATATTGCTAAGTTGGTTTTGGA
CAATAACGGGGATATCCAAGAATCCCGGATGATGCGCATGGGTTGTGACT
TCTCCTTAATGATGCGCGTTGCCGCCCCCAAACCTGATGCCGATCAAATC
ACTCGAAAATTGAGCAAAGTCGGCGGCATGTCTGTCATTACCCACCCGGT
GACTGCCGAAAGAGCTAATCAGATCGTTCCCAAGCCTGTGTGGAAGGCGA
TTTTTTCGGTTGAGGGTGTGAACCATCCTGGCTTGGTTTACAAAGTCACT
GAGTTGTTTTTTGCGCGGGGCTTGCGCGTGGAAAAGCTACATACCGAGAC
GAAAATTGCGCCATTCGGGGGCACGGTCCTATTTTTGATGGATGGGACAA
TCATCTCGGAGAAGGCGATTGATTTTAAAGAGTTGAAGGAGGCGAGTGAC
AGCTTGAGCTCGTTTTTGGGGATCGACTTGGAGTTGAAGCCAGTGCCGGC
GAATGATCAGTAG
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Synonyms
Publications