NO12G02400, NO12G02400 (gene) Nannochloropsis oceanica

Overview
NameNO12G02400
Unique NameNO12G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2884
Alignment locationchr12:690111..692994 -

Link to JBrowse

Properties
Property NameValue
DescriptionPhosphoadenosine phosphosulfate reductase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:690111..692994 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002500PAPS_reduct
Homology
BLAST of NO12G02400 vs. NCBI_GenBank
Match: EWM25822.1 (phosphoadenosine phosphosulfate reductase [Nannochloropsis gaditana])

HSP 1 Score: 553.9 bits (1426), Expect = 6.400e-154
Identity = 267/306 (87.25%), Postives = 278/306 (90.85%), Query Frame = 0
Query:  326 MKGAAVMLLAAGLSVASAFV-PTVPHVALTAGRQHGVVSMGLNAELTKTYPRDFKNIPTGTSYGKGEDAKLNKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLLDKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDKVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIHT 631
            MK   V LLA GLS A+AFV PT P  A+   RQ G+VSMGLNAELTKTYPRDFKNIP GTSYGKGED+ LNKEIE Q  E+LE QL SVLK   +IKKKP+FTTALIAGDCV+LD IAKAGLLDKI+IVFIDTFFLFPETLDFLREVE HYGFKAK+YHCADCPTQE+FYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDKVNPIAFWTFEDCW YLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTY GERSGRFQGLTNKDGSAKTECGIHT
Sbjct:    1 MKTTVVALLATGLSAATAFVLPTGPQPAVKLNRQQGLVSMGLNAELTKTYPRDFKNIPVGTSYGKGEDSTLNKEIEQQTLEFLEGQLSSVLKKAVEIKKKPLFTTALIAGDCVLLDGIAKAGLLDKIEIVFIDTFFLFPETLDFLREVEEHYGFKAKVYHCADCPTQESFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDKVNPIAFWTFEDCWNYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYAGERSGRFQGLTNKDGSAKTECGIHT 306          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: CBJ31693.1 (Phosphoadenylyl-sulfate reductase (thioredoxin) [Ectocarpus siliculosus])

HSP 1 Score: 444.9 bits (1143), Expect = 4.200e-121
Identity = 214/310 (69.03%), Postives = 240/310 (77.42%), Query Frame = 0
Query:  329 AAVMLLAAGLSVASAFVPTVPHV--------ALTAGRQHGVVSMGLNAELTKTYPRDFKNIPTGTSYGKGEDAKLNKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLLDKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDKVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIHT 631
            A + LLAAG   A AFVP  P +        + T+  QH  V MGLN EL   +PRDF  IP GT YG+G+DA++NK  E      LE QL          KK P+FTTALIAGDCVILDAIAKAGLLDKI +VF+DT+FLFPE+LDFL EVE HYGFKA +YHC DC TQ+ FYDKYG DYWMEDIDQYD KCKVEPL RALKE+ T+AWINGRRRDHG ERA+LPVWEG K NP++FW+FEDCWTYLRKHNVPYHPLHDVGFSSLGDMQST KVPLE W +YGGERSGRF+G+ NKDGS KTECGIH+
Sbjct:    6 AFLSLLAAG---ADAFVPAAPVLSTRAAASSSATSAVQHVPVRMGLNPELAANFPRDFATIPKGTDYGEGKDAEMNKLFEEVRMSNLESQLADSFAKLVAEKKNPIFTTALIAGDCVILDAIAKAGLLDKIKVVFVDTYFLFPESLDFLHEVEEHYGFKASIYHCVDCETQQDFYDKYGEDYWMEDIDQYDKKCKVEPLMRALKEAETEAWINGRRRDHGFERAALPVWEGTKFNPLSFWSFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTRKVPLENWFSYGGERSGRFEGMKNKDGSEKTECGIHS 312          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: XP_005830782.1 (hypothetical protein GUITHDRAFT_95252, partial [Guillardia theta CCMP2712] >EKX43802.1 hypothetical protein GUITHDRAFT_95252, partial [Guillardia theta CCMP2712])

HSP 1 Score: 292.4 bits (747), Expect = 3.500e-75
Identity = 141/226 (62.39%), Postives = 166/226 (73.45%), Query Frame = 0
Query:  405 EYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLLDKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDKVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIHT 631
            +YLE+Q +  L       + PVFTTALIAGD VIL  + K+GLL K+ IVFIDT  LFPETL+FL +VE  YGFKA +Y    C T+E F +KYG D ++EDI+ YD   KVEPL RAL+ES T  WINGRRRD G ERA+L VWE +K+NPIAFWTFEDCW Y+ +H VPYHPLHD G+ SLGDM ST +V  EKW  YG ER+GRFQ + N DGS KTECGIHT
Sbjct:   76 KYLEQQAIDDLILAVAKYENPVFTTALIAGDDVILHILHKSGLLPKVKIVFIDTLHLFPETLEFLEKVEKFYGFKAVIYKAEGCETREEFDEKYGDDIFIEDIETYDKVAKVEPLLRALRESKTKLWINGRRRDQGFERAALEVWEKEKMNPIAFWTFEDCWKYIEQHKVPYHPLHDDGYPSLGDMHSTLRVEKEKWFLYGMERAGRFQNMQNPDGSDKTECGIHT 301          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: CAD32963.1 (phosphoadenosine-phosphosulphate reductase [Physcomitrella patens])

HSP 1 Score: 284.3 bits (726), Expect = 9.500e-73
Identity = 141/254 (55.51%), Postives = 175/254 (68.90%), Query Frame = 0
Query:  381 IPTGTSYGKGEDAKLNKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLL--DKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGD---KVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIH 630
            +P  TS    +  K N++  +   ++LE Q +  L+ T +  +KP F  ALIAGD VILD + + G    +K+ I+FIDTF LFPET  FL EVE  YGFKA ++H AD   +EA+  K+G+D ++ DI++YD  CKVEP  RALK    DA INGRRRDHGAERA L V+E     KV P+A+W F DCW YL K+++PYHPLHD GF S+GD+QST  VP EKW  Y GERSGRFQGLTN DGSAKTECGIH
Sbjct:   68 VPVTTSGSSIDIKKCNEQARDARLQHLEAQALETLQKTVENFEKPAFPCALIAGDVVILDLLHRIGAFSDNKVKIIFIDTFHLFPETYKFLSEVEERYGFKAHVFHAADVNNKEAYDAKFGSDLFITDIEEYDRICKVEPFSRALKTLEVDAMINGRRRDHGAERAHLEVFEEGKMVKVQPLAYWEFRDCWDYLTKYSLPYHPLHDQGFPSIGDVQSTIPVPREKWFEYAGERSGRFQGLTNPDGSAKTECGIH 321          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: 4BWV_A (Chain A, Structure Of Adenosine 5-prime-phosphosulfate Reductase Apr-b From Physcomitrella Patens >4BWV_B Chain B, Structure Of Adenosine 5-prime-phosphosulfate Reductase Apr-b From Physcomitrella Patens)

HSP 1 Score: 284.3 bits (726), Expect = 9.500e-73
Identity = 141/254 (55.51%), Postives = 175/254 (68.90%), Query Frame = 0
Query:  381 IPTGTSYGKGEDAKLNKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLL--DKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGD---KVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIH 630
            +P  TS    +  K N++  +   ++LE Q +  L+ T +  +KP F  ALIAGD VILD + + G    +K+ I+FIDTF LFPET  FL EVE  YGFKA ++H AD   +EA+  K+G+D ++ DI++YD  CKVEP  RALK    DA INGRRRDHGAERA L V+E     KV P+A+W F DCW YL K+++PYHPLHD GF S+GD+QST  VP EKW  Y GERSGRFQGLTN DGSAKTECGIH
Sbjct:   25 VPVTTSGSSIDIKKCNEQARDARLQHLEAQALETLQKTVENFEKPAFPCALIAGDVVILDLLHRIGAFSDNKVKIIFIDTFHLFPETYKFLSEVEERYGFKAHVFHAADVNNKEAYDAKFGSDLFITDIEEYDRICKVEPFSRALKTLEVDAMINGRRRDHGAERAHLEVFEEGKMVKVQPLAYWEFRDCWDYLTKYSLPYHPLHDQGFPSIGDVQSTIPVPREKWFEYAGERSGRFQGLTNPDGSAKTECGIH 278          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: PNR62380.1 (hypothetical protein PHYPA_000804 [Physcomitrella patens])

HSP 1 Score: 284.3 bits (726), Expect = 9.500e-73
Identity = 141/254 (55.51%), Postives = 175/254 (68.90%), Query Frame = 0
Query:  381 IPTGTSYGKGEDAKLNKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLL--DKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGD---KVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIH 630
            +P  TS    +  K N++  +   ++LE Q +  L+ T +  +KP F  ALIAGD VILD + + G    +K+ I+FIDTF LFPET  FL EVE  YGFKA ++H AD   +EA+  K+G+D ++ DI++YD  CKVEP  RALK    DA INGRRRDHGAERA L V+E     KV P+A+W F DCW YL K+++PYHPLHD GF S+GD+QST  VP EKW  Y GERSGRFQGLTN DGSAKTECGIH
Sbjct:  126 VPVTTSGSSIDIKKCNEQARDARLQHLEAQALETLQKTVENFEKPAFPCALIAGDVVILDLLHRIGAFSDNKVKIIFIDTFHLFPETYKFLSEVEERYGFKAHVFHAADVNNKEAYDAKFGSDLFITDIEEYDRICKVEPFSRALKTLEVDAMINGRRRDHGAERAHLEVFEEGKMVKVQPLAYWEFRDCWDYLTKYSLPYHPLHDQGFPSIGDVQSTIPVPREKWFEYAGERSGRFQGLTNPDGSAKTECGIH 379          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: XP_024390972.1 (uncharacterized protein LOC112289532 isoform X1 [Physcomitrella patens])

HSP 1 Score: 284.3 bits (726), Expect = 9.500e-73
Identity = 141/254 (55.51%), Postives = 175/254 (68.90%), Query Frame = 0
Query:  381 IPTGTSYGKGEDAKLNKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLL--DKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGD---KVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIH 630
            +P  TS    +  K N++  +   ++LE Q +  L+ T +  +KP F  ALIAGD VILD + + G    +K+ I+FIDTF LFPET  FL EVE  YGFKA ++H AD   +EA+  K+G+D ++ DI++YD  CKVEP  RALK    DA INGRRRDHGAERA L V+E     KV P+A+W F DCW YL K+++PYHPLHD GF S+GD+QST  VP EKW  Y GERSGRFQGLTN DGSAKTECGIH
Sbjct:  101 VPVTTSGSSIDIKKCNEQARDARLQHLEAQALETLQKTVENFEKPAFPCALIAGDVVILDLLHRIGAFSDNKVKIIFIDTFHLFPETYKFLSEVEERYGFKAHVFHAADVNNKEAYDAKFGSDLFITDIEEYDRICKVEPFSRALKTLEVDAMINGRRRDHGAERAHLEVFEEGKMVKVQPLAYWEFRDCWDYLTKYSLPYHPLHDQGFPSIGDVQSTIPVPREKWFEYAGERSGRFQGLTNPDGSAKTECGIH 354          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: XP_024391828.1 (uncharacterized protein LOC112289532 isoform X2 [Physcomitrella patens])

HSP 1 Score: 284.3 bits (726), Expect = 9.500e-73
Identity = 141/254 (55.51%), Postives = 175/254 (68.90%), Query Frame = 0
Query:  381 IPTGTSYGKGEDAKLNKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLL--DKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGD---KVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIH 630
            +P  TS    +  K N++  +   ++LE Q +  L+ T +  +KP F  ALIAGD VILD + + G    +K+ I+FIDTF LFPET  FL EVE  YGFKA ++H AD   +EA+  K+G+D ++ DI++YD  CKVEP  RALK    DA INGRRRDHGAERA L V+E     KV P+A+W F DCW YL K+++PYHPLHD GF S+GD+QST  VP EKW  Y GERSGRFQGLTN DGSAKTECGIH
Sbjct:   45 VPVTTSGSSIDIKKCNEQARDARLQHLEAQALETLQKTVENFEKPAFPCALIAGDVVILDLLHRIGAFSDNKVKIIFIDTFHLFPETYKFLSEVEERYGFKAHVFHAADVNNKEAYDAKFGSDLFITDIEEYDRICKVEPFSRALKTLEVDAMINGRRRDHGAERAHLEVFEEGKMVKVQPLAYWEFRDCWDYLTKYSLPYHPLHDQGFPSIGDVQSTIPVPREKWFEYAGERSGRFQGLTNPDGSAKTECGIH 298          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: XP_002961179.1 (probable phosphoadenosine phosphosulfate reductase [Selaginella moellendorffii] >EFJ38718.1 hypothetical protein SELMODRAFT_270214 [Selaginella moellendorffii])

HSP 1 Score: 282.7 bits (722), Expect = 2.800e-72
Identity = 136/242 (56.20%), Postives = 172/242 (71.07%), Query Frame = 0
Query:  396 NKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLLDK--IDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDK---VNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIHTNK 633
            N E      ++LE Q  SVL+ T +  ++P F  ALIAGD V+LD + K G  +K  + ++FIDTF LFPET  FL+ +E  YGFKA+++H AD  T+E +  K+G+D ++ DID+YD  CKVEP  RAL     DA INGRRRDHGAERA L V +  K   V P+A+W F DCW+YL+K++VPYHPLHD G+ S+GD+QST  VP EKW  YGGERSGRFQGL+NKDGS KTECGIH+ K
Sbjct:   70 NDEAYEARLQHLESQAKSVLQKTIECFERPAFPCALIAGDVVMLDLLHKIGAFEKEAVKVIFIDTFHLFPETYTFLKSLEDKYGFKARVFHAADFNTKEEYLAKHGSDLYIRDIDEYDKICKVEPFNRALSSLQVDAMINGRRRDHGAERAHLEVAQAGKMVNVQPLAYWEFRDCWSYLKKNSVPYHPLHDKGYPSIGDVQSTLPVPKEKWFEYGGERSGRFQGLSNKDGSLKTECGIHSQK 311          
BLAST of NO12G02400 vs. NCBI_GenBank
Match: XP_002966827.1 (uncharacterized protein LOC9631652 [Selaginella moellendorffii] >EFJ31426.1 hypothetical protein SELMODRAFT_270602 [Selaginella moellendorffii])

HSP 1 Score: 281.6 bits (719), Expect = 6.100e-72
Identity = 136/242 (56.20%), Postives = 171/242 (70.66%), Query Frame = 0
Query:  396 NKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLLDK--IDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDK---VNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIHTNK 633
            N E      ++LE Q  SVL+ T +  ++P F  ALIAGD V+LD + K G  +K  + ++FIDTF LFPET  FL+ +E  Y FKA+++H AD  T+E +  K+G+D ++ +ID+YD  CKVEP  RAL     DA INGRRRDHGAERA L V +  K   V P+A+W F DCW+YL+K++VPYHPLHD G+ S+GD+QST  VP EKW  YGGERSGRFQGLTNKDGS KTECGIHT K
Sbjct:   70 NDEAYEARLQHLESQAKSVLQKTIECFERPAFPCALIAGDVVMLDLLHKIGAFEKEAVKVIFIDTFHLFPETYTFLKSLEDKYDFKARVFHAADFTTKEEYLAKHGSDLYIRNIDEYDKICKVEPFNRALSSLQVDAMINGRRRDHGAERAHLEVAQAGKMVNVQPLAYWEFRDCWSYLKKNSVPYHPLHDKGYPSIGDVQSTLPVPKEKWFEYGGERSGRFQGLTNKDGSLKTECGIHTQK 311          
The following BLAST results are available for this feature:
BLAST of NO12G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25822.16.400e-15487.25phosphoadenosine phosphosulfate reductase [Nannoch... [more]
CBJ31693.14.200e-12169.03Phosphoadenylyl-sulfate reductase (thioredoxin) [E... [more]
XP_005830782.13.500e-7562.39hypothetical protein GUITHDRAFT_95252, partial [Gu... [more]
CAD32963.19.500e-7355.51phosphoadenosine-phosphosulphate reductase [Physco... [more]
4BWV_A9.500e-7355.51Chain A, Structure Of Adenosine 5-prime-phosphosul... [more]
PNR62380.19.500e-7355.51hypothetical protein PHYPA_000804 [Physcomitrella ... [more]
XP_024390972.19.500e-7355.51uncharacterized protein LOC112289532 isoform X1 [P... [more]
XP_024391828.19.500e-7355.51uncharacterized protein LOC112289532 isoform X2 [P... [more]
XP_002961179.12.800e-7256.20probable phosphoadenosine phosphosulfate reductase... [more]
XP_002966827.16.100e-7256.20uncharacterized protein LOC9631652 [Selaginella mo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010174NSK010174Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02400.1NO12G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671473gene_5404Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g68gene4723Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02400.1NO12G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02400 ID=NO12G02400|Name=NO12G02400|organism=Nannochloropsis oceanica|type=gene|length=2884bp
ATGGTAGCCGCCACGCCAGACTCCGCAGCCTTTGTGCACGCCTCACCCTT
TCCACGACGGGTTGTCACATCGATCACTTCTGCAACCCAGCGGTTTTGCG
CTGCGGCCTTCGCAACCAGCCCCCGTCCATTTGCCACCACCACCATTCGC
AGCATGCGCACAACGCTTCACGACGAGATGTCGCCGAGTGGTCGATGCCC
CACGCAACCAAACAATGCGGCCTCCAGAGGCTCCGACTCATCTAGCAGGA
GGATGAGGAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGAAGCAGC
AGAAGCAGCAGCAGCAATTCTCGTCCCCGTTCACATCAAAACCAAGAATG
TGAGCGGCCCAAGGCACAAAAACCCGTCTCATCCTCTTCCTTGACGAGCA
TGAGCCAAGCCGCAGCTGGGCGCCAACAACACAATATGGGGGAGTTGGAG
GTTGTTGGAGCGACTTTGGCACTGCTGATGGCACGTGCCTTGGACCCTTT
CCTAAATCCTGCACCAGTACAGAATTATGCTTTGTTGATATGCGACATAG
CTTTGCTAATCACGTTTCGTACGGTTGAGGACATGATCTTGACTCCGTTC
CCCACCGTTGACGTGGTGGCCTCACCTGACTTGATCAAGACTGGATTGCT
GACTTACGCGGACCCGTTTGCCGCTGCGTCGCACATTATCAGTGTTATCT
CGGATGGGTCCACTCTAGGGTGCTTTTGGCTCGCAGCTGTAATGCTTGGT
CGTGCTCAAGCGGTTGAGTGGGATGTGAGTAGTAGCTATGCTCTCTCCAC
GTGGACGACTTTTCGGACGTGGTATTCTCTTGTGAATCTCCGGCTCGGGG
TGCTCTTCTTGCAGgtaagtttaaggtgggaagaaagatacgatgagtgt
tggtgacatggcctgttcgcatatgcagtttggtacgagatgaagctcca
tggattgctttccttcgcatgtttacgctctccaatgctgtccaacaaac
aaaagcttatttagatcccaaaaccatagGCTCTCTCGGTACAAGAAGGC
GTGGATCTCCAGCATTTTCAATCGGAGATGAGCTTCGCTCTAATTACGAT
GCTGTGTTGGCGGTGGCTAAATGTCAGCATCGgtaaggccttcttttgag
tagtctgcagtatattttatattagaaagagagtgggtagcattgtacag
agacagtattttcattttttgatttttatgttgatggtagaaatacgcat
gtgctactagttttcaaactcctttccatccgtagaagtagaagtaaaca
tgtgagggttatttttccctgagggattgatcgattcattcctttgtgag
atcgatgttgaccttggtcgagcctctcaatttatctgatgggtcatcat
caaccatttacgaatcaggtgggggggagactgtgcaatggttagggtgg
gggaagggaacttgtgtcgcctttcacctctgtccaaacttgggggatgc
ggtgacaataaaaagagagagaacagaacacgcacctgaaaaaaacaata
ccttgcctacagacatgctctcgctgttgctgttgctgtttccatgtaaa
ctgtggagtgctggatgggccgtcaatgtcggcggagaaacaacgcacac
tcttcgcactcactcgctcgccacggagagccacacgtccacctcgcagg
cgtatcctccattccctactctaattctattttgggcacactttcgccaa
tccatgcatcgttttcatcggtaacatgtcgagcatacgatctttttaga
tcgtatctgcatgttgtaggcgccgcgtctcgccgtgtccctgtgtcctt
ccagcaagccaccccagcaccattgtcatcagctgttgttcaagcttggt
gcatcccattcatcttcccttttctcctttctctcttcaccatgccccac
agAGCCAGCCATGAAGGGTGCTGCTGTGATGCTGTTGGCCGCCGGCTTAT
CGGTGGCATCAGCTTTCGTGCCCACCGTGCCCCACGTAGCCTTGACGGCC
GGACGGCAGCACGGCGTGGTCTCCATGGGCCTGAACGCGGAGCTGACCAA
GACATATCCCCGTGACTTTAAGAACATCCCCACGGGCACCAGCTATGGCA
AAGGTGAGGACGCAAAGCTTAACAAGGAAATTGAAAATCAGATGCAGGAA
TATTTGGAGAAGCAGCTCATGTCCGTGCTGAAGACGACGGCTGACATCAA
AAAGAAGCCCGTCTTCACCACGGCCCTCATTGCGGGCGACTGTGTGATCC
TGGATGCCATTGCCAAGGCCGGCCTGCTGGACAAGATCGATATTGTCTTC
ATCGACACGTTTTTCCTCTTCCCCGAAACGCTGGATTTCTTGCGCGAGGT
GGAGGCGCACTACGGCTTCAAGGCTAAGATGTATCACTGCGCGGACTGTC
CTACTCAAGAGGCTTTCTATGACAAGTATGGCGCCGACTATTGGATGGAG
GACATTGACCAGTACGATTTTAAGTGCAAGGTCGAGCCACTGCAGCGTGC
TCTCAAGGAGTCTGGCACCGACGCCTGGATCAACGGCCGTCGGAGGGACC
ACGGGGCGGAGCGCGCGTCTTTGCCCGTGTGGGAAGGTGACAAAGTGAAC
CCCATAGCTTTCTGGACCTTTGAGGACTGCTGGACATATTTGCGCAAACA
TAATGTGCCCTATCATCCTCTACACGACGTGGGATTCTCCTCCCTGGGTG
ACATGCAGAGCACGGCGAAAGTCCCTCTGGAGAAGTGGATGACTTACGGT
GGGGAGCGCAGCGGACGCTTCCAGGGCCTGACCAACAAAGACGGGTCTGC
CAAGACTGAGTGCGGCATCCACACAAATAAGTAA
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protein sequence of NO12G02400.1

>NO12G02400.1-protein ID=NO12G02400.1-protein|Name=NO12G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MVAATPDSAAFVHASPFPRRVVTSITSATQRFCAAAFATSPRPFATTTIR
SMRTTLHDEMSPSGRCPTQPNNAASRGSDSSSRRMRSSSSSSSRSSSRSS
RSSSSNSRPRSHQNQECERPKAQKPVSSSSLTSMSQAAAGRQQHNMGELE
VVGATLALLMARALDPFLNPAPVQNYALLICDIALLITFRTVEDMILTPF
PTVDVVASPDLIKTGLLTYADPFAAASHIISVISDGSTLGCFWLAAVMLG
RAQAVEWDVSSSYALSTWTTFRTWYSLVNLRLGVLFLQALSVQEGVDLQH
FQSEMSFALITMLCWRWLNVSIEPAMKGAAVMLLAAGLSVASAFVPTVPH
VALTAGRQHGVVSMGLNAELTKTYPRDFKNIPTGTSYGKGEDAKLNKEIE
NQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLLDK
IDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGA
DYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWE
GDKVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEK
WMTYGGERSGRFQGLTNKDGSAKTECGIHTNK*
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Synonyms
Publications