NO12G02400.1, NO12G02400.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02400.1
Unique Name	NO12G02400.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1899
Alignment location	chr12:690111..692994 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:690111..692994 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO12G02400.1 vs.
Match: EWM25822.1 (phosphoadenosine phosphosulfate reductase [Nannochloropsis gaditana])

HSP 1 Score: 553.9 bits (1426), Expect = 6.400e-154
Identity = 267/306 (87.25%), Postives = 278/306 (90.85%), Query Frame = 0

Query:  326 MKGAAVMLLAAGLSVASAFV-PTVPHVALTAGRQHGVVSMGLNAELTKTYPRDFKNIPTGTSYGKGEDAKLNKEIENQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLLDKIDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDKVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYGGERSGRFQGLTNKDGSAKTECGIHT 631
            MK   V LLA GLS A+AFV PT P  A+   RQ G+VSMGLNAELTKTYPRDFKNIP GTSYGKGED+ LNKEIE Q  E+LE QL SVLK   +IKKKP+FTTALIAGDCV+LD IAKAGLLDKI+IVFIDTFFLFPETLDFLREVE HYGFKAK+YHCADCPTQE+FYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDKVNPIAFWTFEDCW YLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTY GERSGRFQGLTNKDGSAKTECGIHT
Sbjct:    1 MKTTVVALLATGLSAATAFVLPTGPQPAVKLNRQQGLVSMGLNAELTKTYPRDFKNIPVGTSYGKGEDSTLNKEIEQQTLEFLEGQLSSVLKKAVEIKKKPLFTTALIAGDCVLLDGIAKAGLLDKIEIVFIDTFFLFPETLDFLREVEEHYGFKAKVYHCADCPTQESFYDKYGADYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWEGDKVNPIAFWTFEDCWNYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEKWMTYAGERSGRFQGLTNKDGSAKTECGIHT 306

The following BLAST results are available for this feature:

BLAST of NO12G02400.1 vs.

BLAST of NO12G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25822.1	6.400e-154	87.25	phosphoadenosine phosphosulfate reductase [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G02400	NO12G02400	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02400.1	NO12G02400.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02400.1.cds1	NO12G02400.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G02400.1.cds2	NO12G02400.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G02400.1.cds3	NO12G02400.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:690111..692994-
coding sequence from alignment at chr12:690111..692994-

mRNA sequence

>NO12G02400.1 ID=NO12G02400.1|Name=NO12G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp
ATGGTAGCCGCCACGCCAGACTCCGCAGCCTTTGTGCACGCCTCACCCTT
TCCACGACGGGTTGTCACATCGATCACTTCTGCAACCCAGCGGTTTTGCG
CTGCGGCCTTCGCAACCAGCCCCCGTCCATTTGCCACCACCACCATTCGC
AGCATGCGCACAACGCTTCACGACGAGATGTCGCCGAGTGGTCGATGCCC
CACGCAACCAAACAATGCGGCCTCCAGAGGCTCCGACTCATCTAGCAGGA
GGATGAGGAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGAAGCAGC
AGAAGCAGCAGCAGCAATTCTCGTCCCCGTTCACATCAAAACCAAGAATG
TGAGCGGCCCAAGGCACAAAAACCCGTCTCATCCTCTTCCTTGACGAGCA
TGAGCCAAGCCGCAGCTGGGCGCCAACAACACAATATGGGGGAGTTGGAG
GTTGTTGGAGCGACTTTGGCACTGCTGATGGCACGTGCCTTGGACCCTTT
CCTAAATCCTGCACCAGTACAGAATTATGCTTTGTTGATATGCGACATAG
CTTTGCTAATCACGTTTCGTACGGTTGAGGACATGATCTTGACTCCGTTC
CCCACCGTTGACGTGGTGGCCTCACCTGACTTGATCAAGACTGGATTGCT
GACTTACGCGGACCCGTTTGCCGCTGCGTCGCACATTATCAGTGTTATCT
CGGATGGGTCCACTCTAGGGTGCTTTTGGCTCGCAGCTGTAATGCTTGGT
CGTGCTCAAGCGGTTGAGTGGGATGTGAGTAGTAGCTATGCTCTCTCCAC
GTGGACGACTTTTCGGACGTGGTATTCTCTTGTGAATCTCCGGCTCGGGG
TGCTCTTCTTGCAGGCTCTCTCGGTACAAGAAGGCGTGGATCTCCAGCAT
TTTCAATCGGAGATGAGCTTCGCTCTAATTACGATGCTGTGTTGGCGGTG
GCTAAATGTCAGCATCGAGCCAGCCATGAAGGGTGCTGCTGTGATGCTGT
TGGCCGCCGGCTTATCGGTGGCATCAGCTTTCGTGCCCACCGTGCCCCAC
GTAGCCTTGACGGCCGGACGGCAGCACGGCGTGGTCTCCATGGGCCTGAA
CGCGGAGCTGACCAAGACATATCCCCGTGACTTTAAGAACATCCCCACGG
GCACCAGCTATGGCAAAGGTGAGGACGCAAAGCTTAACAAGGAAATTGAA
AATCAGATGCAGGAATATTTGGAGAAGCAGCTCATGTCCGTGCTGAAGAC
GACGGCTGACATCAAAAAGAAGCCCGTCTTCACCACGGCCCTCATTGCGG
GCGACTGTGTGATCCTGGATGCCATTGCCAAGGCCGGCCTGCTGGACAAG
ATCGATATTGTCTTCATCGACACGTTTTTCCTCTTCCCCGAAACGCTGGA
TTTCTTGCGCGAGGTGGAGGCGCACTACGGCTTCAAGGCTAAGATGTATC
ACTGCGCGGACTGTCCTACTCAAGAGGCTTTCTATGACAAGTATGGCGCC
GACTATTGGATGGAGGACATTGACCAGTACGATTTTAAGTGCAAGGTCGA
GCCACTGCAGCGTGCTCTCAAGGAGTCTGGCACCGACGCCTGGATCAACG
GCCGTCGGAGGGACCACGGGGCGGAGCGCGCGTCTTTGCCCGTGTGGGAA
GGTGACAAAGTGAACCCCATAGCTTTCTGGACCTTTGAGGACTGCTGGAC
ATATTTGCGCAAACATAATGTGCCCTATCATCCTCTACACGACGTGGGAT
TCTCCTCCCTGGGTGACATGCAGAGCACGGCGAAAGTCCCTCTGGAGAAG
TGGATGACTTACGGTGGGGAGCGCAGCGGACGCTTCCAGGGCCTGACCAA
CAAAGACGGGTCTGCCAAGACTGAGTGCGGCATCCACACAAATAAGTAA

protein sequence of NO12G02400.1

>NO12G02400.1-protein ID=NO12G02400.1-protein|Name=NO12G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MVAATPDSAAFVHASPFPRRVVTSITSATQRFCAAAFATSPRPFATTTIR
SMRTTLHDEMSPSGRCPTQPNNAASRGSDSSSRRMRSSSSSSSRSSSRSS
RSSSSNSRPRSHQNQECERPKAQKPVSSSSLTSMSQAAAGRQQHNMGELE
VVGATLALLMARALDPFLNPAPVQNYALLICDIALLITFRTVEDMILTPF
PTVDVVASPDLIKTGLLTYADPFAAASHIISVISDGSTLGCFWLAAVMLG
RAQAVEWDVSSSYALSTWTTFRTWYSLVNLRLGVLFLQALSVQEGVDLQH
FQSEMSFALITMLCWRWLNVSIEPAMKGAAVMLLAAGLSVASAFVPTVPH
VALTAGRQHGVVSMGLNAELTKTYPRDFKNIPTGTSYGKGEDAKLNKEIE
NQMQEYLEKQLMSVLKTTADIKKKPVFTTALIAGDCVILDAIAKAGLLDK
IDIVFIDTFFLFPETLDFLREVEAHYGFKAKMYHCADCPTQEAFYDKYGA
DYWMEDIDQYDFKCKVEPLQRALKESGTDAWINGRRRDHGAERASLPVWE
GDKVNPIAFWTFEDCWTYLRKHNVPYHPLHDVGFSSLGDMQSTAKVPLEK
WMTYGGERSGRFQGLTNKDGSAKTECGIHTNK*

mRNA from alignment at chr12:690111..692994-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G02400.1 ID=NO12G02400.1|Name=NO12G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp|location=Sequence derived from alignment at chr12:690111..692994- (Nannochloropsis oceanica)
ATGGTAGCCGCCACGCCAGACTCCGCAGCCTTTGTGCACGCCTCACCCTT
TCCACGACGGGTTGTCACATCGATCACTTCTGCAACCCAGCGGTTTTGCG
CTGCGGCCTTCGCAACCAGCCCCCGTCCATTTGCCACCACCACCATTCGC
AGCATGCGCACAACGCTTCACGACGAGATGTCGCCGAGTGGTCGATGCCC
CACGCAACCAAACAATGCGGCCTCCAGAGGCTCCGACTCATCTAGCAGGA
GGATGAGGAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGAAGCAGC
AGAAGCAGCAGCAGCAATTCTCGTCCCCGTTCACATCAAAACCAAGAATG
TGAGCGGCCCAAGGCACAAAAACCCGTCTCATCCTCTTCCTTGACGAGCA
TGAGCCAAGCCGCAGCTGGGCGCCAACAACACAATATGGGGGAGTTGGAG
GTTGTTGGAGCGACTTTGGCACTGCTGATGGCACGTGCCTTGGACCCTTT
CCTAAATCCTGCACCAGTACAGAATTATGCTTTGTTGATATGCGACATAG
CTTTGCTAATCACGTTTCGTACGGTTGAGGACATGATCTTGACTCCGTTC
CCCACCGTTGACGTGGTGGCCTCACCTGACTTGATCAAGACTGGATTGCT
GACTTACGCGGACCCGTTTGCCGCTGCGTCGCACATTATCAGTGTTATCT
CGGATGGGTCCACTCTAGGGTGCTTTTGGCTCGCAGCTGTAATGCTTGGT
CGTGCTCAAGCGGTTGAGTGGGATGTGAGTAGTAGCTATGCTCTCTCCAC
GTGGACGACTTTTCGGACGTGGTATTCTCTTGTGAATCTCCGGCTCGGGG
TGCTCTTCTTGCAGGTAAGTTTAAGGTGGGAAGAAAGATACGATGAGTGT
TGGTGACATGGCCTGTTCGCATATGCAGTTTGGTACGAGATGAAGCTCCA
TGGATTGCTTTCCTTCGCATGTTTACGCTCTCCAATGCTGTCCAACAAAC
AAAAGCTTATTTAGATCCCAAAACCATAGGCTCTCTCGGTACAAGAAGGC
GTGGATCTCCAGCATTTTCAATCGGAGATGAGCTTCGCTCTAATTACGAT
GCTGTGTTGGCGGTGGCTAAATGTCAGCATCGGTAAGGCCTTCTTTTGAG
TAGTCTGCAGTATATTTTATATTAGAAAGAGAGTGGGTAGCATTGTACAG
AGACAGTATTTTCATTTTTTGATTTTTATGTTGATGGTAGAAATACGCAT
GTGCTACTAGTTTTCAAACTCCTTTCCATCCGTAGAAGTAGAAGTAAACA
TGTGAGGGTTATTTTTCCCTGAGGGATTGATCGATTCATTCCTTTGTGAG
ATCGATGTTGACCTTGGTCGAGCCTCTCAATTTATCTGATGGGTCATCAT
CAACCATTTACGAATCAGGTGGGGGGGAGACTGTGCAATGGTTAGGGTGG
GGGAAGGGAACTTGTGTCGCCTTTCACCTCTGTCCAAACTTGGGGGATGC
GGTGACAATAAAAAGAGAGAGAACAGAACACGCACCTGAAAAAAACAATA
CCTTGCCTACAGACATGCTCTCGCTGTTGCTGTTGCTGTTTCCATGTAAA
CTGTGGAGTGCTGGATGGGCCGTCAATGTCGGCGGAGAAACAACGCACAC
TCTTCGCACTCACTCGCTCGCCACGGAGAGCCACACGTCCACCTCGCAGG
CGTATCCTCCATTCCCTACTCTAATTCTATTTTGGGCACACTTTCGCCAA
TCCATGCATCGTTTTCATCGGTAACATGTCGAGCATACGATCTTTTTAGA
TCGTATCTGCATGTTGTAGGCGCCGCGTCTCGCCGTGTCCCTGTGTCCTT
CCAGCAAGCCACCCCAGCACCATTGTCATCAGCTGTTGTTCAAGCTTGGT
GCATCCCATTCATCTTCCCTTTTCTCCTTTCTCTCTTCACCATGCCCCAC
AGAGCCAGCCATGAAGGGTGCTGCTGTGATGCTGTTGGCCGCCGGCTTAT
CGGTGGCATCAGCTTTCGTGCCCACCGTGCCCCACGTAGCCTTGACGGCC
GGACGGCAGCACGGCGTGGTCTCCATGGGCCTGAACGCGGAGCTGACCAA
GACATATCCCCGTGACTTTAAGAACATCCCCACGGGCACCAGCTATGGCA
AAGGTGAGGACGCAAAGCTTAACAAGGAAATTGAAAATCAGATGCAGGAA
TATTTGGAGAAGCAGCTCATGTCCGTGCTGAAGACGACGGCTGACATCAA
AAAGAAGCCCGTCTTCACCACGGCCCTCATTGCGGGCGACTGTGTGATCC
TGGATGCCATTGCCAAGGCCGGCCTGCTGGACAAGATCGATATTGTCTTC
ATCGACACGTTTTTCCTCTTCCCCGAAACGCTGGATTTCTTGCGCGAGGT
GGAGGCGCACTACGGCTTCAAGGCTAAGATGTATCACTGCGCGGACTGTC
CTACTCAAGAGGCTTTCTATGACAAGTATGGCGCCGACTATTGGATGGAG
GACATTGACCAGTACGATTTTAAGTGCAAGGTCGAGCCACTGCAGCGTGC
TCTCAAGGAGTCTGGCACCGACGCCTGGATCAACGGCCGTCGGAGGGACC
ACGGGGCGGAGCGCGCGTCTTTGCCCGTGTGGGAAGGTGACAAAGTGAAC
CCCATAGCTTTCTGGACCTTTGAGGACTGCTGGACATATTTGCGCAAACA
TAATGTGCCCTATCATCCTCTACACGACGTGGGATTCTCCTCCCTGGGTG
ACATGCAGAGCACGGCGAAAGTCCCTCTGGAGAAGTGGATGACTTACGGT
GGGGAGCGCAGCGGACGCTTCCAGGGCCTGACCAACAAAGACGGGTCTGC
CAAGACTGAGTGCGGCATCCACACAAATAAGTAA

Coding sequence (CDS) from alignment at chr12:690111..692994-

>NO12G02400.1 ID=NO12G02400.1|Name=NO12G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at chr12:690111..692994- (Nannochloropsis oceanica)
ATGGTAGCCGCCACGCCAGACTCCGCAGCCTTTGTGCACGCCTCACCCTT
TCCACGACGGGTTGTCACATCGATCACTTCTGCAACCCAGCGGTTTTGCG
CTGCGGCCTTCGCAACCAGCCCCCGTCCATTTGCCACCACCACCATTCGC
AGCATGCGCACAACGCTTCACGACGAGATGTCGCCGAGTGGTCGATGCCC
CACGCAACCAAACAATGCGGCCTCCAGAGGCTCCGACTCATCTAGCAGGA
GGATGAGGAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGAAGCAGC
AGAAGCAGCAGCAGCAATTCTCGTCCCCGTTCACATCAAAACCAAGAATG
TGAGCGGCCCAAGGCACAAAAACCCGTCTCATCCTCTTCCTTGACGAGCA
TGAGCCAAGCCGCAGCTGGGCGCCAACAACACAATATGGGGGAGTTGGAG
GTTGTTGGAGCGACTTTGGCACTGCTGATGGCACGTGCCTTGGACCCTTT
CCTAAATCCTGCACCAGTACAGAATTATGCTTTGTTGATATGCGACATAG
CTTTGCTAATCACGTTTCGTACGGTTGAGGACATGATCTTGACTCCGTTC
CCCACCGTTGACGTGGTGGCCTCACCTGACTTGATCAAGACTGGATTGCT
GACTTACGCGGACCCGTTTGCCGCTGCGTCGCACATTATCAGTGTTATCT
CGGATGGGTCCACTCTAGGGTGCTTTTGGCTCGCAGCTGTAATGCTTGGT
CGTGCTCAAGCGGTTGAGTGGGATGTGAGTAGTAGCTATGCTCTCTCCAC
GTGGACGACTTTTCGGACGTGGTATTCTCTTGTGAATCTCCGGCTCGGGG
TGCTCTTCTTGCAGGCTCTCTCGGTACAAGAAGGCGTGGATCTCCAGCAT
TTTCAATCGGAGATGAGCTTCGCTCTAATTACGATGCTGTGTTGGCGGTG
GCTAAATGTCAGCATCGAGCCAGCCATGAAGGGTGCTGCTGTGATGCTGT
TGGCCGCCGGCTTATCGGTGGCATCAGCTTTCGTGCCCACCGTGCCCCAC
GTAGCCTTGACGGCCGGACGGCAGCACGGCGTGGTCTCCATGGGCCTGAA
CGCGGAGCTGACCAAGACATATCCCCGTGACTTTAAGAACATCCCCACGG
GCACCAGCTATGGCAAAGGTGAGGACGCAAAGCTTAACAAGGAAATTGAA
AATCAGATGCAGGAATATTTGGAGAAGCAGCTCATGTCCGTGCTGAAGAC
GACGGCTGACATCAAAAAGAAGCCCGTCTTCACCACGGCCCTCATTGCGG
GCGACTGTGTGATCCTGGATGCCATTGCCAAGGCCGGCCTGCTGGACAAG
ATCGATATTGTCTTCATCGACACGTTTTTCCTCTTCCCCGAAACGCTGGA
TTTCTTGCGCGAGGTGGAGGCGCACTACGGCTTCAAGGCTAAGATGTATC
ACTGCGCGGACTGTCCTACTCAAGAGGCTTTCTATGACAAGTATGGCGCC
GACTATTGGATGGAGGACATTGACCAGTACGATTTTAAGTGCAAGGTCGA
GCCACTGCAGCGTGCTCTCAAGGAGTCTGGCACCGACGCCTGGATCAACG
GCCGTCGGAGGGACCACGGGGCGGAGCGCGCGTCTTTGCCCGTGTGGGAA
GGTGACAAAGTGAACCCCATAGCTTTCTGGACCTTTGAGGACTGCTGGAC
ATATTTGCGCAAACATAATGTGCCCTATCATCCTCTACACGACGTGGGAT
TCTCCTCCCTGGGTGACATGCAGAGCACGGCGAAAGTCCCTCTGGAGAAG
TGGATGACTTACGGTGGGGAGCGCAGCGGACGCTTCCAGGGCCTGACCAA
CAAAGACGGGTCTGCCAAGACTGAGTGCGGCATCCACACAAATAAGTAA

Synonyms

Publications