NO12G02260, NO12G02260 (gene) Nannochloropsis oceanica

Overview
NameNO12G02260
Unique NameNO12G02260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr12:644386..646089 -

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Properties
Property NameValue
DescriptionAtp-dependent hsl protease atp-binding subunit hslu
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:644386..646089 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009376HslUV protease complex
GO:0005737cytoplasm
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0070011peptidase activity, acting on L-amino acid peptides
GO:0016887ATPase activity
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR004491HslU
IPR003959ATPase_AAA_core
IPR019489Clp_ATPase_C
IPR003593AAA+_ATPase
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Homology
BLAST of NO12G02260 vs. NCBI_GenBank
Match: EWM25843.1 (atp-dependent hsl protease atp-binding subunit hslu [Nannochloropsis gaditana])

HSP 1 Score: 816.2 bits (2107), Expect = 6.200e-233
Identity = 423/451 (93.79%), Postives = 441/451 (97.78%), Query Frame = 0
Query:  117 EVVAAALKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            E VAAAL+P+ELV+YLD+YIVGQADAKRAVAIALRNRWRRHKLP+DLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIK+EAQKAVEEK+LQILTGPYAR+DAKETFRDLLRKGSLNDRL+DVEVPADRG  GG+FDKAGAGPG GAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGN+NTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTE+DMYRILTEP+TNLIAQQVALLSTE +ALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVE+ISF+A+DK EG VITVDK LV  RVNDLLVESD+SKYIL
Sbjct:  140 EPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRG-PGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: XP_009036261.1 (hypothetical protein AURANDRAFT_37329 [Aureococcus anophagefferens] >EGB09147.1 hypothetical protein AURANDRAFT_37329 [Aureococcus anophagefferens])

HSP 1 Score: 538.5 bits (1386), Expect = 2.500e-149
Identity = 283/446 (63.45%), Postives = 357/446 (80.04%), Query Frame = 0
Query:  123 LKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSR-AIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            + P+ +V  LD++IVGQ+ AKRAVAIALRNRWRR  L E+L+ EI+PKNILMIGPTGCGKTEIARR++KL+ APFIKVEATKFTEVGFHGRDVDQIIRDLVE S+ +T+K+++E  + EA++ VE +IL  LTG  A    + +FR++LRKG L+DR +DV++PA +  A          PG     + N  +S+ DF+G+F+  A   K   E++++ ++EA PL+ E E++KL++  D+ +EA+ +VEESGIVFIDEIDKI N SDYRGADASAEGVQRDLLPLIEG TISTK+GNV+TDYILFI+SGAFHQ KP+DLLAELQGRLPIRVEL  LTE DM+RILTEP TNLIAQQ ALL+TE V LEFTD A+REIARVA+L N+T+ENIGARRLHT +ERI+++ISF A D   G ++TVDK  V+ +V+DLL++SD+SKYIL
Sbjct:   54 MTPRAIVDELDKHIVGQSAAKRAVAIALRNRWRRQLLGEELKAEIVPKNILMIGPTGCGKTEIARRLSKLAQAPFIKVEATKFTEVGFHGRDVDQIIRDLVEASITLTRKKKAEQFREEARRLVEGRILDTLTGLNAAQATQSSFREMLRKGVLDDRQIDVDLPAAQPGA--------QPPGGVIQLDQNNPISINDFLGRFNALAQQGKGRSERKRMSIREARPLIEEQELDKLLEGVDIHKEAVAAVEESGIVFIDEIDKIVNASDYRGADASAEGVQRDLLPLIEGSTISTKYGNVDTDYILFIASGAFHQAKPSDLLAELQGRLPIRVELDALTEADMHRILTEPETNLIAQQRALLATENVMLEFTDCAIREIARVASLANRTIENIGARRLHTCIERIIDDISFNACDYKPGDLVTVDKAYVEGKVDDLLIQSDLSKYIL 491          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: POM71208.1 (ATP-dependent protease HslVU, ATPase subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 537.3 bits (1383), Expect = 5.600e-149
Identity = 282/450 (62.67%), Postives = 349/450 (77.56%), Query Frame = 0
Query:  119 VAAALKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDY-RGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            +   LKP+E+V+ L++YIVGQADAKRAVAIALRNRWRR K+ ++LR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE +IL +LTG    + ++ TF  LLR G L DRL+DVEVPA +  +G      G G G G   E             F RA   K+  EK+++ + EA  +  E+EM+  +DM+DV REAIQ  EE+GIVFIDEIDKIC+  DY R +D S+EGVQRDLLPLIEG  ISTKHGNVNTD+ILF+ SGAFH  KP+DLLAELQGRLPIRVELKGLTE+D++RILTEP+TNLI QQ+ L+ TE V L+FTD+AVREIARVAA +NKTVENIGARRLHTV+E++VEEISF++S+ A G+ +T+ K+ V  RV  L+ ++D+SK+IL
Sbjct:   73 IGRKLKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKSRKEKLRKQVQHLVESRILDVLTGANVAERSRSTFERLLRLGELEDRLIDVEVPAAKNPSGQPISFVG-GEGKGISME------------VFGRAFGEKK-TEKKRMTIAEARGVFEEMEMDNAIDMTDVVREAIQETEENGIVFIDEIDKICSSGDYRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQIELIKTEGVTLDFTDDAVREIARVAAEINKTVENIGARRLHTVVEKVVEEISFDSSEMAPGSTVTITKEFVLERVGKLMKKTDLSKFIL 508          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: GAX98894.1 (ATP-dependent protease HslVU, ATPase subunit [Pythium insidiosum])

HSP 1 Score: 535.4 bits (1378), Expect = 2.100e-148
Identity = 281/446 (63.00%), Postives = 346/446 (77.58%), Query Frame = 0
Query:  123 LKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDY-RGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            LKP+E+V  L++YIVGQ DAK+AVAIALRNRWRR K+PEDLR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK+R E ++ E Q  VE +IL  LTG    + ++ +F+ LLR G + DR + V+VP  R +A              +F   +  + + +    FS+A   K+  E++ + V E+  +  E+EMEK +DM+DV REAI   EE+GIVFIDEIDKIC+  D+ R AD S+EGVQRDLLPLIEGC ISTKHGNVNTD+ILFI SGAFH  KP+DLLAELQGRLPIRVELKGLTE D+YRILTEP+TNLI QQ+ L+ TE V LEFTDEA+REIARVAA +NKTVENIGARRLHTVLE++VE+ISF++ + A GA +TV K+ V  RV +LL ++D+SK+IL
Sbjct:   29 LKPREVVDQLNKYIVGQPDAKKAVAIALRNRWRRLKIPEDLRAEVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKQRKERVRKEVQHLVESRILDALTGANGTERSRASFQRLLRLGEMEDRTITVDVPVARNNASNPI----------SFVAGDKGLPIGEI---FSKAYGEKK-TERKAMTVAESRAVFEEMEMEKAIDMTDVVREAISETEENGIVFIDEIDKICSNGDFRRQADPSSEGVQRDLLPLIEGCVISTKHGNVNTDHILFIGSGAFHSAKPSDLLAELQGRLPIRVELKGLTEQDLYRILTEPVTNLIKQQIELIKTEDVHLEFTDEAIREIARVAAEINKTVENIGARRLHTVLEKVVEDISFDSCEMAPGATVTVTKEFVTERVGNLLKKTDLSKFIL 460          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: OWZ19301.1 (ATP-dependent protease [Phytophthora megakarya])

HSP 1 Score: 529.3 bits (1362), Expect = 1.500e-146
Identity = 276/450 (61.33%), Postives = 348/450 (77.33%), Query Frame = 0
Query:  119 VAAALKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDY-RGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            +   LKP+E+V+ L++YIVGQADAKRAVAIALRNRWRR K+ ++LR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE +IL +LTG    + ++ TF  LL  G L DRL+DV+VPA +  +G      G G G G   E             F RA   K+  EK+++ + E+  +  E+EME  +DM+DV REAIQ  EE+GIVFIDEIDKIC+  D+ R +D S+EGVQRDLLPLIEG  ISTKHGNVNTD+ILF+ SGAFH  KP+DLLAELQGRLPIRVELKGLTE+D++RILTEP+TNLI QQ+ L+ TE V L+F+++A+REIARVAA +NKTVENIGARRLHTV+E++VEEISF++S+ A G+ +T+ K+ V  RV  L+ ++D+SK+IL
Sbjct:   74 IGRKLKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKSRKERLRKQVQHLVESRILDVLTGANVAERSRATFERLLHAGELEDRLIDVDVPAAKNPSGQPISFVG-GEGKGISME------------VFGRAFGEKK-TEKKRMTIAESRGVFEEMEMENAIDMTDVVREAIQETEENGIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQIELIKTEGVTLDFSEDAIREIARVAAEINKTVENIGARRLHTVVEKVVEEISFDSSEMAPGSTVTITKEFVLERVGKLMKKTDLSKFIL 509          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: XP_008896704.1 (ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica INRA-310] >ETI34672.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica P1569] >ETK75019.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica] >ETL28442.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica] >ETL81692.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica] >ETM34897.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica] >ETN17114.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica INRA-310] >ETO63470.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica P1976] >ETP04572.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica CJ01A1] >ETP32697.1 ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica P10297] >KUF66786.1 ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora nicotianae] >KUF88586.1 ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora nicotianae] >KUF99517.1 Bzip transcription factor [Phytophthora nicotianae])

HSP 1 Score: 528.1 bits (1359), Expect = 3.400e-146
Identity = 277/446 (62.11%), Postives = 343/446 (76.91%), Query Frame = 0
Query:  123 LKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDY-RGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            LKP+E+V+ L++YIVGQADAKRAVAIALRNRWRR K+ ++LR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE +IL +LTG    + ++ TF  LLR G L DR+++ +VP  +   G      G G G G   E             F RA   K+  E++++ + E+  +  E+EME  +DM+DV REAIQ  EE+GIVFIDEIDKIC+  DY R +D S+EGVQRDLLPLIEG  ISTKHGNVNTD+ILF+ SGAFH  KP+DLLAELQGRLPIRVELKGLTE+D++RILTEP+TNLI QQ  L+ TE V L FTD+AVREIARVAA VNKTVENIGARRLHTV+E++VEEISF++S+ A G+ +T+ K+ V  RV  L+ ++D+SK+IL
Sbjct:   82 LKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKHRKERLRKQVQHLVESRILDVLTGANVAERSRATFERLLRTGELEDRIIEFDVPVSKNPGGQPISFVG-GEGKGISME------------VFGRAFGEKK-TERKRMTIAESREVFEEMEMENAIDMTDVVREAIQETEENGIVFIDEIDKICSSGDYRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQTELIQTEGVTLNFTDDAVREIARVAAEVNKTVENIGARRLHTVVEKVVEEISFDSSEMAPGSTVTITKEFVLERVGKLMKKTDLSKFIL 513          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: XP_009517532.1 (hypothetical protein PHYSODRAFT_469020 [Phytophthora sojae] >EGZ30257.1 hypothetical protein PHYSODRAFT_469020 [Phytophthora sojae])

HSP 1 Score: 525.4 bits (1352), Expect = 2.200e-145
Identity = 273/450 (60.67%), Postives = 347/450 (77.11%), Query Frame = 0
Query:  119 VAAALKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDY-RGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            +   LKP+E+V+ L++Y+VGQADAKRAVAIALRNRWRR K+ ++LR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE +IL +LTG    + ++ TF  LL  G L DR+++++VPA +   G      G G G G   E+            F RA   K+  E++++ + E+  +  E+EME  +DM+DV REAIQ  EE+GIVFIDEIDKIC+  D+ R +D S+EGVQRDLLPLIEG  ISTKHGNVNTD+ILF+ SGAFH  KP+DLLAELQGRLPIRVELKGLTE+D++RILTEP+TNLI QQV L+ TE V L FTD+AVREIARVAA +N+TVENIGARRLHTV+E++VE+ISF++S+ A G+ +T+ K+ V  RV  L+ ++D+SK+IL
Sbjct:   82 IGRKLKPREVVEQLNKYVVGQADAKRAVAIALRNRWRRQKVSDELRREVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKSRKERLRKQVQHLVESRILDVLTGANVTERSRSTFERLLHAGELEDRIIEIDVPAAKNPGGQPISFVG-GEGKGISIEA------------FGRAFGEKK-TERKRMTIAESRGVFEEMEMENAIDMTDVVREAIQETEENGIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQVELIKTEGVNLNFTDDAVREIARVAAEINQTVENIGARRLHTVVEKVVEDISFDSSEMAPGSTVTITKEFVLERVGKLMKKTDLSKFIL 517          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: XP_024578459.1 (atp-dependent protease atpase subunit [Plasmopara halstedii] >CEG42090.1 atp-dependent protease atpase subunit [Plasmopara halstedii])

HSP 1 Score: 524.6 bits (1350), Expect = 3.700e-145
Identity = 275/450 (61.11%), Postives = 345/450 (76.67%), Query Frame = 0
Query:  119 VAAALKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDY-RGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            +   LKP+E+V+ L++YIVGQADAKRAVAIALRNRWRR K+ ++LR EI PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE +IL +LTG    + ++ TF  LLR G L DR+++ +VP  +  +       G G G G   E             F RA   KR ME++++ + E+  +  E+EME  +DM+DV REAI   EE+GIVFIDEIDKIC+  D+ R +D S+EGVQRDLLPLIEG  ISTKHGNVNTD+ILFI SGAFH  KP+DLLAELQGRLPIRVELKGLTE+D++RILTEP+TNLI QQ+ L+STE V L FTD+A+REIARVA  +N+TVENIGARRLHTV+E++VE+ISF++S+ A G+++T+ KD V  RV  L+  +D+SK+IL
Sbjct:   78 IGRKLKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEISPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKNRKEKMRKQVQHLVENRILDVLTGANVAERSRATFERLLRTGELEDRMIEFDVPVSKNPSAQPISIVG-GEGKGIPME------------VFGRAFGEKR-MERKRMTIAESRGVFEEMEMENAIDMTDVVREAIHESEENGIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFIGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQIELISTEGVVLSFTDDAIREIARVANEINQTVENIGARRLHTVMEKVVEDISFDSSEMAPGSIVTITKDFVLERVGKLMKTTDLSKFIL 513          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: XP_002186384.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65854.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 523.5 bits (1347), Expect = 8.300e-145
Identity = 276/457 (60.39%), Postives = 366/457 (80.09%), Query Frame = 0
Query:  123 LKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDD-------AKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPN-VSMADFIGKFSRAIMPKR-PMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSD---YRGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            ++P E+V  LDR+IVGQ DAKRAVAIA+RNRWRR +LPEDLR E+ P+N+L++GPTG GKTE+ RR+AKL+DAPF+KVEATKFTEVG+HGRDVDQIIRDL+++S+ +T+K  +E ++++A+  VE++IL +LTGP  +          +++FRD+LR+G L+D+ ++VEVP      G      GAG G G    ++PN V+M+D   + S A   K+ P E++K+ + EA  ++LEVE+EKL++  D+ +EAIQ+VEESGIVFIDEIDKIC+  D    R ADASAEGVQRDLLPLIEG TI+TK+GNVNTDYILF+++GAFH  KP+DLL ELQGRLPIRVELKGLTEDD+YRILTEP+ NL+ QQV L+ +E V+LEF D+AVREIAR+AAL+N+T+ENIGARRLHTV+ERI+EE+SFEA++  +GA++ VDK LVQ+R+ +   +SD+SKYIL
Sbjct:    1 MRPSEVVHELDRHIVGQHDAKRAVAIAMRNRWRRQQLPEDLRKEVTPRNVLLVGPTGVGKTEVMRRMAKLNDAPFLKVEATKFTEVGYHGRDVDQIIRDLMDVSMQLTRKVWTEKLRSQARAMVEDRILDLLTGPAQQGKGGTGDARGRDSFRDMLRQGMLDDQEIEVEVP-----QGDRNPDVGAGGGDG----TSPNIVAMSDLWQRMSGAQGGKKTPSERKKLPISEAREVILEVELEKLLENVDMKKEAIQAVEESGIVFIDEIDKICSARDSFSTRSADASAEGVQRDLLPLIEGTTINTKYGNVNTDYILFVAAGAFHSVKPSDLLPELQGRLPIRVELKGLTEDDLYRILTEPVANLVRQQVELIGSEGVSLEFDDDAVREIARMAALLNRTIENIGARRLHTVMERIMEELSFEAAELDKGAILRVDKALVQTRLEESTKKSDLSKYIL 448          
BLAST of NO12G02260 vs. NCBI_GenBank
Match: CCI50713.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 520.4 bits (1339), Expect = 7.100e-144
Identity = 266/449 (59.24%), Postives = 345/449 (76.84%), Query Frame = 0
Query:  119 VAAALKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            V   LKP+E+V  L+  I+GQ  AKRAVAIALRNRWRR K+  DLR EI PKNILMIGPTGCGKTEIARR+AKL++APFIKVEATKFTEVGFHGRDVDQIIRDLVE ++N+ KK++ E ++ + Q+ VE +IL  L GP +  +++  F +LL+ G + +R++ ++VP  RG+        G G    +F  S   + + + IGK    +  ++  E R + V E+  +  E+EME  +DM+DV REAI   EE+GIVFIDEIDKIC+  D+R ADAS+EGVQRDLLPL+EG  ISTKHGNVNTD+ILFI SGAFH  KP+DLLAELQGRLPIRVELKGLTE D+YRILTEP+++L+ QQ+ LL TEK+ L+FT++A+REIARVA  +N T+ENIGARRLHT++E++VE+ISF+ASD + G+ +TV KDLV+ RV  +L ++D+SK+IL
Sbjct:  116 VGRKLKPREVVSILNTCIIGQESAKRAVAIALRNRWRRMKVTPDLRPEISPKNILMIGPTGCGKTEIARRLAKLAEAPFIKVEATKFTEVGFHGRDVDQIIRDLVENAINLVKKQKQERVRQQVQQLVERRILDALIGPNSTANSRAAFENLLKTGEMEERMITIDVPVSRGN--------GMGGTPISFMASQGPLPVGEIIGKAYTTM--EKKSETRNMTVAESRSVFEEMEMENAIDMTDVVREAIHETEENGIVFIDEIDKICSTGDFRSADASSEGVQRDLLPLLEGSVISTKHGNVNTDHILFIGSGAFHSSKPSDLLAELQGRLPIRVELKGLTESDLYRILTEPVSSLVRQQIELLKTEKIDLDFTEDAIREIARVATDINNTIENIGARRLHTIMEKVVEDISFDASDLSPGSKVTVTKDLVRERVGPMLKKADLSKFIL 554          
The following BLAST results are available for this feature:
BLAST of NO12G02260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25843.16.200e-23393.79atp-dependent hsl protease atp-binding subunit hsl... [more]
XP_009036261.12.500e-14963.45hypothetical protein AURANDRAFT_37329 [Aureococcus... [more]
POM71208.15.600e-14962.67ATP-dependent protease HslVU, ATPase subunit [Phyt... [more]
GAX98894.12.100e-14863.00ATP-dependent protease HslVU, ATPase subunit [Pyth... [more]
OWZ19301.11.500e-14661.33ATP-dependent protease [Phytophthora megakarya][more]
XP_008896704.13.400e-14662.11ATP-dependent protease HslVU, ATPase subunit [Phyt... [more]
XP_009517532.12.200e-14560.67hypothetical protein PHYSODRAFT_469020 [Phytophtho... [more]
XP_024578459.13.700e-14561.11atp-dependent protease atpase subunit [Plasmopara ... [more]
XP_002186384.18.300e-14560.39predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CCI50713.17.100e-14459.24unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010159NSK010159Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02260.1NO12G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592380gene_5387Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g53gene4711Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02260.1NO12G02260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02260 ID=NO12G02260|Name=NO12G02260|organism=Nannochloropsis oceanica|type=gene|length=1704bp
ATGATTCGGTCACTGACCCGCAGTGCGAGCATCAGCAATAGGGTAGGGTC
CGCGTCCTCCATCCCTTTCTCAACATCGAGCTCCCCCAACACCCGTATTG
CTGTCAGCACGTCCTCAATCTGCTTGTCCCATCCGATTCCACCACTGCAT
CGGCATAACTCGTTTTCTTGTACGCCGCTCTCTCTCGTCTCTCAAAGCAA
TCGAAGGGCCCTAAGCATCGAGACGGAGCCACCGCCACCACCATCGGGCG
GAAGCGACGGAACGGCCGTGTCGGGAGATGGAGGGGCAGGGACGACATCG
ACTGAAACGGCGGCGGCGGACAAGCCTCAACCCACGCCGGCCACGCCCGA
GGTTGTGGCGGCGGCTCTAAAGCCGAAAGAATTGGTCAAATACCTCGATC
GGTATATCGTGGGGCAGGCGGACGCCAAGCGGGCCGTCGCCATCGCGCTA
CGGAATCGTTGGCGGCGGCACAAGCTGCCGGAGGACCTGCGGACGGAGAT
CATCCCTAAGAATATCCTGATGATTGGTCCCACGGGCTGTGGCAAGACGG
AAATTGCACGGCGCATTGCGAAACTCTCGGACGCGCCTTTCATCAAAGTG
GAGGCCACCAAGTTCACGGAAGTTGGCTTCCACGGCCGCGACGTGGACCA
GATCATCCGCGATTTGGTGGAGATCTCGGTGAACATGACAAAAAAGCGGC
GTAGTGAGGCCATCAAGGCGGAGGCCCAGAAGGCGGTGGAGGAAAAGATC
CTCCAGATACTGACGGGCCCCTATGCGCGAGACGACGCGAAGGAGACTTT
CCGTGACCTGCTGCGCAAGGGCAGCCTTAATGACCGGCTCGTCGACGTGG
AGGTTCCTGCGGACCGGGGCAGTGCAGGGGGTGTATTCGACAAAGCGGGT
GCAGGGCCGGGCAGCGGGGCATTCGCTGAGAGCAACCCGAACGTTTCCAT
GGCGGACTTCATCGGCAAGTTCTCGCGCGCCATTATGCCCAAACGTCCTA
TGGAGAAAAGAAAGATCCTGGTCAAGGAGGCAATGCCGCTGCTACTGGAG
GTGGAAATGGAGAAGCTTGTGGACATGTCGGACGTTACGCGGGAGGCCAT
TCAGTCAGTGGAGGAGAGCGGCATTGTCTTCATCGACGAGATCGACAAGA
TCTGCAACCCCAGCGACTACCGGGGCGCGGACGCCTCTGCGGAGGGCGTC
CAACGGGACCTCCTTCCGCTAATCGAGGGTTGTACCATCAGCACTAAGCA
CGGGAATGTGAACACGGACTACATCCTCTTCATATCATCGGGTGCCTTTC
ACCAGTGCAAGCCCGCCGACCTGCTGGCCGAGCTGCAGGGTAGGCTGCCC
ATCCGGGTGGAGCTTAAGGGCCTGACGGAGGATGACATGTACCGTATACT
GACGGAGCCCATCACCAACCTCATCGCCCAGCAGGTAGCGTTACTCTCTA
CCGAAAAGGTAGCGTTGGAATTCACGGACGAGGCTGTGCGGGAGATCGCG
CGGGTTGCTGCCTTGGTCAACAAGACTGTGGAGAACATTGGAGCGCGCCG
CCTGCACACAGTGCTGGAGCGTATTGTGGAGGAGATTTCTTTCGAGGCCT
CGGACAAGGCCGAAGGAGCCGTCATAACCGTGGACAAGGACCTCGTTCAG
AGCCGCGTCAATGACCTCCTGGTCGAGTCTGATATCTCTAAGTACATCTT
GTAA
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protein sequence of NO12G02260.1

>NO12G02260.1-protein ID=NO12G02260.1-protein|Name=NO12G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MIRSLTRSASISNRVGSASSIPFSTSSSPNTRIAVSTSSICLSHPIPPLH
RHNSFSCTPLSLVSQSNRRALSIETEPPPPPSGGSDGTAVSGDGGAGTTS
TETAAADKPQPTPATPEVVAAALKPKELVKYLDRYIVGQADAKRAVAIAL
RNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKV
EATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKI
LQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAG
AGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLE
VEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGV
QRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLP
IRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIA
RVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQ
SRVNDLLVESDISKYIL*
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Synonyms
Publications