NO12G02260.1, NO12G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02260.1
Unique NameNO12G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr12:644386..646089 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:644386..646089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02260.1 vs.
Match: EWM25843.1 (atp-dependent hsl protease atp-binding subunit hslu [Nannochloropsis gaditana])

HSP 1 Score: 836.6 bits (2160), Expect = 4.400e-239
Identity = 448/512 (87.50%), Postives = 471/512 (91.99%), Query Frame = 0 
Query:   65 QSNRRALSIET-------EPPPP--PSGGSDGTAVSGDGGAGTTSTETAAADKPQPTPATPEVVAAALKPKELVKYLDRYIVGQADAKRAVAIALRNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKILQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAGAGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQSRVNDLLVESDISKYIL 568
            +S RR   +ET       EPPPP   S G  GT   G+G AGT S+ TAAAD    +    E VAAAL+P+ELV+YLD+YIVGQADAKRAVAIALRNRWRRHKLP+DLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIK+EAQKAVEEK+LQILTGPYAR+DAKETFRDLLRKGSLNDRL+DVEVPADRG  GG+FDKAGAGPG GAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGN+NTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTE+DMYRILTEP+TNLIAQQVALLSTE +ALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVE+ISF+A+DK EG VITVDK LV  RVNDLLVESD+SKYIL
Sbjct:   79 RSERRLFEVETGGSFVPTEPPPPGGSSVGDAGTGEPGNGYAGTMSSATAAADDTPLSTTGSEPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGP-GGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
The following BLAST results are available for this feature:
BLAST of NO12G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25843.14.400e-23987.50atp-dependent hsl protease atp-binding subunit hsl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02260NO12G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02260.1NO12G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02260.1.cds1NO12G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02260.1 ID=NO12G02260.1|Name=NO12G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp
ATGATTCGGTCACTGACCCGCAGTGCGAGCATCAGCAATAGGGTAGGGTC
CGCGTCCTCCATCCCTTTCTCAACATCGAGCTCCCCCAACACCCGTATTG
CTGTCAGCACGTCCTCAATCTGCTTGTCCCATCCGATTCCACCACTGCAT
CGGCATAACTCGTTTTCTTGTACGCCGCTCTCTCTCGTCTCTCAAAGCAA
TCGAAGGGCCCTAAGCATCGAGACGGAGCCACCGCCACCACCATCGGGCG
GAAGCGACGGAACGGCCGTGTCGGGAGATGGAGGGGCAGGGACGACATCG
ACTGAAACGGCGGCGGCGGACAAGCCTCAACCCACGCCGGCCACGCCCGA
GGTTGTGGCGGCGGCTCTAAAGCCGAAAGAATTGGTCAAATACCTCGATC
GGTATATCGTGGGGCAGGCGGACGCCAAGCGGGCCGTCGCCATCGCGCTA
CGGAATCGTTGGCGGCGGCACAAGCTGCCGGAGGACCTGCGGACGGAGAT
CATCCCTAAGAATATCCTGATGATTGGTCCCACGGGCTGTGGCAAGACGG
AAATTGCACGGCGCATTGCGAAACTCTCGGACGCGCCTTTCATCAAAGTG
GAGGCCACCAAGTTCACGGAAGTTGGCTTCCACGGCCGCGACGTGGACCA
GATCATCCGCGATTTGGTGGAGATCTCGGTGAACATGACAAAAAAGCGGC
GTAGTGAGGCCATCAAGGCGGAGGCCCAGAAGGCGGTGGAGGAAAAGATC
CTCCAGATACTGACGGGCCCCTATGCGCGAGACGACGCGAAGGAGACTTT
CCGTGACCTGCTGCGCAAGGGCAGCCTTAATGACCGGCTCGTCGACGTGG
AGGTTCCTGCGGACCGGGGCAGTGCAGGGGGTGTATTCGACAAAGCGGGT
GCAGGGCCGGGCAGCGGGGCATTCGCTGAGAGCAACCCGAACGTTTCCAT
GGCGGACTTCATCGGCAAGTTCTCGCGCGCCATTATGCCCAAACGTCCTA
TGGAGAAAAGAAAGATCCTGGTCAAGGAGGCAATGCCGCTGCTACTGGAG
GTGGAAATGGAGAAGCTTGTGGACATGTCGGACGTTACGCGGGAGGCCAT
TCAGTCAGTGGAGGAGAGCGGCATTGTCTTCATCGACGAGATCGACAAGA
TCTGCAACCCCAGCGACTACCGGGGCGCGGACGCCTCTGCGGAGGGCGTC
CAACGGGACCTCCTTCCGCTAATCGAGGGTTGTACCATCAGCACTAAGCA
CGGGAATGTGAACACGGACTACATCCTCTTCATATCATCGGGTGCCTTTC
ACCAGTGCAAGCCCGCCGACCTGCTGGCCGAGCTGCAGGGTAGGCTGCCC
ATCCGGGTGGAGCTTAAGGGCCTGACGGAGGATGACATGTACCGTATACT
GACGGAGCCCATCACCAACCTCATCGCCCAGCAGGTAGCGTTACTCTCTA
CCGAAAAGGTAGCGTTGGAATTCACGGACGAGGCTGTGCGGGAGATCGCG
CGGGTTGCTGCCTTGGTCAACAAGACTGTGGAGAACATTGGAGCGCGCCG
CCTGCACACAGTGCTGGAGCGTATTGTGGAGGAGATTTCTTTCGAGGCCT
CGGACAAGGCCGAAGGAGCCGTCATAACCGTGGACAAGGACCTCGTTCAG
AGCCGCGTCAATGACCTCCTGGTCGAGTCTGATATCTCTAAGTACATCTT
GTAA
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protein sequence of NO12G02260.1

>NO12G02260.1-protein ID=NO12G02260.1-protein|Name=NO12G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MIRSLTRSASISNRVGSASSIPFSTSSSPNTRIAVSTSSICLSHPIPPLH
RHNSFSCTPLSLVSQSNRRALSIETEPPPPPSGGSDGTAVSGDGGAGTTS
TETAAADKPQPTPATPEVVAAALKPKELVKYLDRYIVGQADAKRAVAIAL
RNRWRRHKLPEDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKV
EATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKAEAQKAVEEKI
LQILTGPYARDDAKETFRDLLRKGSLNDRLVDVEVPADRGSAGGVFDKAG
AGPGSGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLE
VEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGV
QRDLLPLIEGCTISTKHGNVNTDYILFISSGAFHQCKPADLLAELQGRLP
IRVELKGLTEDDMYRILTEPITNLIAQQVALLSTEKVALEFTDEAVREIA
RVAALVNKTVENIGARRLHTVLERIVEEISFEASDKAEGAVITVDKDLVQ
SRVNDLLVESDISKYIL*
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mRNA from alignment at chr12:644386..646089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02260.1 ID=NO12G02260.1|Name=NO12G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at chr12:644386..646089- (Nannochloropsis oceanica)
ATGATTCGGTCACTGACCCGCAGTGCGAGCATCAGCAATAGGGTAGGGTC
CGCGTCCTCCATCCCTTTCTCAACATCGAGCTCCCCCAACACCCGTATTG
CTGTCAGCACGTCCTCAATCTGCTTGTCCCATCCGATTCCACCACTGCAT
CGGCATAACTCGTTTTCTTGTACGCCGCTCTCTCTCGTCTCTCAAAGCAA
TCGAAGGGCCCTAAGCATCGAGACGGAGCCACCGCCACCACCATCGGGCG
GAAGCGACGGAACGGCCGTGTCGGGAGATGGAGGGGCAGGGACGACATCG
ACTGAAACGGCGGCGGCGGACAAGCCTCAACCCACGCCGGCCACGCCCGA
GGTTGTGGCGGCGGCTCTAAAGCCGAAAGAATTGGTCAAATACCTCGATC
GGTATATCGTGGGGCAGGCGGACGCCAAGCGGGCCGTCGCCATCGCGCTA
CGGAATCGTTGGCGGCGGCACAAGCTGCCGGAGGACCTGCGGACGGAGAT
CATCCCTAAGAATATCCTGATGATTGGTCCCACGGGCTGTGGCAAGACGG
AAATTGCACGGCGCATTGCGAAACTCTCGGACGCGCCTTTCATCAAAGTG
GAGGCCACCAAGTTCACGGAAGTTGGCTTCCACGGCCGCGACGTGGACCA
GATCATCCGCGATTTGGTGGAGATCTCGGTGAACATGACAAAAAAGCGGC
GTAGTGAGGCCATCAAGGCGGAGGCCCAGAAGGCGGTGGAGGAAAAGATC
CTCCAGATACTGACGGGCCCCTATGCGCGAGACGACGCGAAGGAGACTTT
CCGTGACCTGCTGCGCAAGGGCAGCCTTAATGACCGGCTCGTCGACGTGG
AGGTTCCTGCGGACCGGGGCAGTGCAGGGGGTGTATTCGACAAAGCGGGT
GCAGGGCCGGGCAGCGGGGCATTCGCTGAGAGCAACCCGAACGTTTCCAT
GGCGGACTTCATCGGCAAGTTCTCGCGCGCCATTATGCCCAAACGTCCTA
TGGAGAAAAGAAAGATCCTGGTCAAGGAGGCAATGCCGCTGCTACTGGAG
GTGGAAATGGAGAAGCTTGTGGACATGTCGGACGTTACGCGGGAGGCCAT
TCAGTCAGTGGAGGAGAGCGGCATTGTCTTCATCGACGAGATCGACAAGA
TCTGCAACCCCAGCGACTACCGGGGCGCGGACGCCTCTGCGGAGGGCGTC
CAACGGGACCTCCTTCCGCTAATCGAGGGTTGTACCATCAGCACTAAGCA
CGGGAATGTGAACACGGACTACATCCTCTTCATATCATCGGGTGCCTTTC
ACCAGTGCAAGCCCGCCGACCTGCTGGCCGAGCTGCAGGGTAGGCTGCCC
ATCCGGGTGGAGCTTAAGGGCCTGACGGAGGATGACATGTACCGTATACT
GACGGAGCCCATCACCAACCTCATCGCCCAGCAGGTAGCGTTACTCTCTA
CCGAAAAGGTAGCGTTGGAATTCACGGACGAGGCTGTGCGGGAGATCGCG
CGGGTTGCTGCCTTGGTCAACAAGACTGTGGAGAACATTGGAGCGCGCCG
CCTGCACACAGTGCTGGAGCGTATTGTGGAGGAGATTTCTTTCGAGGCCT
CGGACAAGGCCGAAGGAGCCGTCATAACCGTGGACAAGGACCTCGTTCAG
AGCCGCGTCAATGACCTCCTGGTCGAGTCTGATATCTCTAAGTACATCTT
GTAA
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Coding sequence (CDS) from alignment at chr12:644386..646089-

>NO12G02260.1 ID=NO12G02260.1|Name=NO12G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr12:644386..646089- (Nannochloropsis oceanica)
ATGATTCGGTCACTGACCCGCAGTGCGAGCATCAGCAATAGGGTAGGGTC
CGCGTCCTCCATCCCTTTCTCAACATCGAGCTCCCCCAACACCCGTATTG
CTGTCAGCACGTCCTCAATCTGCTTGTCCCATCCGATTCCACCACTGCAT
CGGCATAACTCGTTTTCTTGTACGCCGCTCTCTCTCGTCTCTCAAAGCAA
TCGAAGGGCCCTAAGCATCGAGACGGAGCCACCGCCACCACCATCGGGCG
GAAGCGACGGAACGGCCGTGTCGGGAGATGGAGGGGCAGGGACGACATCG
ACTGAAACGGCGGCGGCGGACAAGCCTCAACCCACGCCGGCCACGCCCGA
GGTTGTGGCGGCGGCTCTAAAGCCGAAAGAATTGGTCAAATACCTCGATC
GGTATATCGTGGGGCAGGCGGACGCCAAGCGGGCCGTCGCCATCGCGCTA
CGGAATCGTTGGCGGCGGCACAAGCTGCCGGAGGACCTGCGGACGGAGAT
CATCCCTAAGAATATCCTGATGATTGGTCCCACGGGCTGTGGCAAGACGG
AAATTGCACGGCGCATTGCGAAACTCTCGGACGCGCCTTTCATCAAAGTG
GAGGCCACCAAGTTCACGGAAGTTGGCTTCCACGGCCGCGACGTGGACCA
GATCATCCGCGATTTGGTGGAGATCTCGGTGAACATGACAAAAAAGCGGC
GTAGTGAGGCCATCAAGGCGGAGGCCCAGAAGGCGGTGGAGGAAAAGATC
CTCCAGATACTGACGGGCCCCTATGCGCGAGACGACGCGAAGGAGACTTT
CCGTGACCTGCTGCGCAAGGGCAGCCTTAATGACCGGCTCGTCGACGTGG
AGGTTCCTGCGGACCGGGGCAGTGCAGGGGGTGTATTCGACAAAGCGGGT
GCAGGGCCGGGCAGCGGGGCATTCGCTGAGAGCAACCCGAACGTTTCCAT
GGCGGACTTCATCGGCAAGTTCTCGCGCGCCATTATGCCCAAACGTCCTA
TGGAGAAAAGAAAGATCCTGGTCAAGGAGGCAATGCCGCTGCTACTGGAG
GTGGAAATGGAGAAGCTTGTGGACATGTCGGACGTTACGCGGGAGGCCAT
TCAGTCAGTGGAGGAGAGCGGCATTGTCTTCATCGACGAGATCGACAAGA
TCTGCAACCCCAGCGACTACCGGGGCGCGGACGCCTCTGCGGAGGGCGTC
CAACGGGACCTCCTTCCGCTAATCGAGGGTTGTACCATCAGCACTAAGCA
CGGGAATGTGAACACGGACTACATCCTCTTCATATCATCGGGTGCCTTTC
ACCAGTGCAAGCCCGCCGACCTGCTGGCCGAGCTGCAGGGTAGGCTGCCC
ATCCGGGTGGAGCTTAAGGGCCTGACGGAGGATGACATGTACCGTATACT
GACGGAGCCCATCACCAACCTCATCGCCCAGCAGGTAGCGTTACTCTCTA
CCGAAAAGGTAGCGTTGGAATTCACGGACGAGGCTGTGCGGGAGATCGCG
CGGGTTGCTGCCTTGGTCAACAAGACTGTGGAGAACATTGGAGCGCGCCG
CCTGCACACAGTGCTGGAGCGTATTGTGGAGGAGATTTCTTTCGAGGCCT
CGGACAAGGCCGAAGGAGCCGTCATAACCGTGGACAAGGACCTCGTTCAG
AGCCGCGTCAATGACCTCCTGGTCGAGTCTGATATCTCTAAGTACATCTT
GTAA
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Synonyms
Publications