NO12G01950, NO12G01950 (gene) Nannochloropsis oceanica

Overview
NameNO12G01950
Unique NameNO12G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1989
Alignment locationchr12:553790..555778 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna-dihydrouridine synthase a
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:553790..555778 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0002943tRNA dihydrouridine synthesis
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR004653DusA
IPR001269tRNA_hU_synthase
Homology
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_005856098.1 (hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526] >EKU20234.1 hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526] >EWM25795.1 trna-dihydrouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 605.5 bits (1560), Expect = 1.300e-169
Identity = 298/412 (72.33%), Postives = 336/412 (81.55%), Query Frame = 0
Query:   28 SGLAFVQQQARLPAKLRKLTIGKRMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH 440
            S  AFVQ   R+    R              MS   A  M        G   E  G    DER+SLAPMMEYTDRH RF LRLLSKRMVLYTEMITAPTLY N++SRDRFL+FN+PAEHPVVLQLGGSDP  L+EASR+A PY Y+A+NLNCGCPSERVSG+GCFGAALMREPERVA++CTAM EGS+G+IP+TVKCRIGVDD+DSYEQLA FV  VS ASPVRHF+VHARKAILGGLSPDQNR+VPPLKYPFVYRL +EFPHLRFTLNGGVLSYEDV  HL+EGVHGVM+GRA++ARPFYWSD+DAR++G+   NPGLTR E+L +YGAYA+EE+ R G R+RRLL KPVH+LFAGEPMGKRFRA LDQALL+P+L VRQVLE ATAV+P ALLEV PGS +IPAPE VRH
Sbjct:   40 STAAFVQHHGRMSKNWR--------------MSRSVARTMTSSSTRGRGASQEDGGSEGPDERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGSAAIPAPEAVRH 437          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: CBJ49172.1 (FAD binding / catalytic/ tRNA dihydrouridine synthase [Ectocarpus siliculosus])

HSP 1 Score: 380.2 bits (975), Expect = 8.800e-102
Identity = 190/343 (55.39%), Postives = 243/343 (70.85%), Query Frame = 0
Query:   89 ERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGR---LRRLLTKPVHHLFAGEPMGKRFRAALDQALL-DPTLGVRQVLETATAVLPPALLEVKPG 428
            E  SLAPMMEYTDRH R+ LRLL+ R VL+TEM+ + T+  N D   RFL +N   EHPVVLQ+GGSD   + EA R+A PY YDAINLNCGCPSE+V+G+G FGAALMR P  V D+C AM +G+    PITVKCRIGVD++DSYEQLA FV  VS  + V HF+VHARKAILGGLSP QNR +PPLKY FVYRL K+FP + FTLNGGV +YE+  + L++G HGVMVGR+  + P+YWS  D+ L+GA  ++PGLTR E+L +Y  Y E ++   G +    RR L KP+ H+F GE  GK+FR AL+  L  D + G  ++++ +   +P   ++  PG
Sbjct:   80 EVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEEAVSCLEQGAHGVMVGRSWSSNPWYWSQADSMLFGA--KDPGLTRREVLERYAEYGERQEKACGEKWLACRRRLAKPIWHMFHGEKGGKKFRVALEGMLREDKSFG--EIVQKSLLAMPQDQVDWLPG 418          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: CEL98082.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 350.5 bits (898), Expect = 7.500e-93
Identity = 185/357 (51.82%), Postives = 243/357 (68.07%), Query Frame = 0
Query:   90 RISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNK---------DSR-DRFLKFNAPA-EHPVVLQLGGSDPFLLSEASRIALPYN-YDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKE--GVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEE----DVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGS 429
            R S+APMM+YTD+HFRF +RLL++   LYTEM+ A  LY            DS   R L  NA + E P VLQLGGSDP +L+EASR+A  Y+ +  +NLNCGCPSERV+G+G FGAALMREP  VA++C AM +G  G  P TVKCRIGVDD DS+E+L  F+  V+  + V HF++H+RKAIL GLSP+QNR++PPL Y +VYRL + FP LRFTLNGGVL+YED++TH +    + GVMVGRA++ RPFYWS++D+RL+G   +NPGL R E+L  YG+Y + E    D      LR LL K   +LFAGEPM ++++  ++       + V  +L  A   L   +LE +PGS
Sbjct:   16 RFSVAPMMDYTDKHFRFLMRLLTRNATLYTEMVAANALYYTNRHAAADATADSMIPRSLATNAESIESPCVLQLGGSDPDVLAEASRMASTYHPFTEMNLNCGCPSERVAGKGAFGAALMREPALVAELCKAMRQG--GGRPTTVKCRIGVDDHDSFEELQRFIATVAERAHVSHFIIHSRKAILSGLSPEQNRKIPPLIYEYVYRLVEGFPGLRFTLNGGVLTYEDIDTHFERCPTLTGVMVGRAVLDRPFYWSEVDSRLHGR--DNPGLNRREVLAAYGSYCDAEMERTDPSRQRSLRNLLLKHALNLFAGEPMSRKYKQRVEALRQRGDVSVSAILSEAGEQLHEGVLERRPGS 368          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: CEL98066.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 346.3 bits (887), Expect = 1.400e-91
Identity = 184/357 (51.54%), Postives = 242/357 (67.79%), Query Frame = 0
Query:   90 RISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTL-YLNKDSR---------DRFLKFNAPA-EHPVVLQLGGSDPFLLSEASRIALPYN-YDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKE--GVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEE----DVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGS 429
            R S+APMM+YTD+HFRF +RLL++   LYTEM+ A  L Y N+ +           R L  NA + E P VLQLGGSDP +L+EASR A  Y+ +  +NLNCGCPSERV+G+G FGAALMREP  VA++C AM +G  G  P TVKCRIGVDD+DS+E+L  F+  V+  + V HF++H+RKAIL GLSP+QNR++PPL Y +VYRL + FP LRFTLNGGVL+YED++ H +    + GVMVGRA++ RPFYWS++D+RLYG   +N GL R E+L  YG+Y + E    D      LR LL K   +LFAGEPM ++++  L+       + V  +L  A   L   +LE +PGS
Sbjct:   20 RFSVAPMMDYTDKHFRFLMRLLTRNATLYTEMMAANALHYTNRQAAADATADSMIPRSLATNAESIESPCVLQLGGSDPDVLAEASRTASAYHPFTELNLNCGCPSERVAGKGAFGAALMREPALVAELCKAMRQG--GGRPTTVKCRIGVDDQDSFEELQRFISTVAERAGVSHFIIHSRKAILTGLSPEQNRKIPPLIYEYVYRLVEGFPGLRFTLNGGVLTYEDIDMHFERCPTLTGVMVGRAVLDRPFYWSEVDSRLYGR--DNLGLNRREVLAAYGSYCDAEMERTDPSRQRSLRNLLLKHALNLFAGEPMSRKYKQRLEALRQRGDVSVSAILREAEEQLHEGVLERRPGS 372          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_005715794.1 (unnamed protein product [Chondrus crispus] >CDF35975.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 325.5 bits (833), Expect = 2.600e-85
Identity = 176/357 (49.30%), Postives = 228/357 (63.87%), Query Frame = 0
Query:   81 MTGPLLLDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKF-----NAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFY-WSDIDARLYG---AVGENPGLTRGEILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGS 429
            MTG L    R S+APMME TDRHFR   RL+S+  VLYTEM+   TL  N+  R+  L+      ++ ++HPVVLQLGGS P  L  A+RIA  Y Y  +NLNCGCPS +V+G+GCFGAALMR PE VA+    M        P+TVKCRIGVDD DSY+ L  FV  V     V+HF++HARKAILGGLSP QNR VPPLKY +V+RL ++FP + FT+NGG  +   V+  L  GVHGVMVGR ++ +P++   D+D   +G      +   LTR  +L  Y AYAE E  R G  +R ++ KP+  LF GEP GK +R A+D+ L DP L V  ++  A++VL   +L+  P S
Sbjct:  109 MTG-LCHSPRYSVAPMMEVTDRHFRTLSRLISRDAVLYTEMVVDRTLIYNEQLREYALRIPPLPNSSSSQHPVVLQLGGSVPDELEAAARIAAKYGYSEVNLNCGCPSPKVAGKGCFGAALMRAPEVVAEATKKMAAVLPETTPVTVKCRIGVDDLDSYDFLRNFVEIVHQRGGVKHFIIHARKAILGGLSPAQNRSVPPLKYGYVHRLLQDFPDVTFTINGGFKTLSAVQEQLDVGVHGVMVGREVMDKPWHALCDVDRLFFGRNCTPDDGTILTRRGVLRDYTAYAENEIERTGCSIRAVV-KPLLQLFHGEPNGKIYRRAIDECLRDPALSVGDIINRASSVLSDDVLDAPPPS 463          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_024368039.1 (uncharacterized protein LOC112278670 isoform X1 [Physcomitrella patens] >PNR25924.1 hypothetical protein PHYPA_031309 [Physcomitrella patens])

HSP 1 Score: 315.1 bits (806), Expect = 3.500e-82
Identity = 173/343 (50.44%), Postives = 226/343 (65.89%), Query Frame = 0
Query:   87 LDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPF-YWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLR--RLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKP 427
            L  R S+APMM++TD H+R   RL+SK   LYTEM+ A T+   +D+ D+FLKFN   +HP+VLQLGGSDP  L +AS +A  Y YD INLNCGCPSE+V+G GCFGA+LM E   VA+   A+ EGS G  P+TVKCRIGVDD DSY+ L +FV  VS +SP +HFVVHARKAIL GLSP  NR +PPLKY +VY L ++FP+L+FTLNGGV++   V   L+EGV GVM+GRA    P+    ++D  +YG     P LTR +IL +Y  YA+ E  + G +    R L KP+  +F  E     +R A+D +L +    V  +L+    VLP  +L+  P
Sbjct:   82 LPPRFSVAPMMDWTDNHYRTLARLMSKHAWLYTEMVVADTIIHQQDNLDKFLKFN-EVQHPIVLQLGGSDPEKLLKASLLASVYEYDEINLNCGCPSEKVAGHGCFGASLMLESGLVAECMAAIAEGSPG-TPVTVKCRIGVDDFDSYDLLHKFVTTVSSSSPTQHFVVHARKAILKGLSPAANRTIPPLKYEYVYALIRDFPNLKFTLNGGVVNTHQVNEALQEGVFGVMLGRAAYNYPWATLGNVDNSVYG--DSTPRLTRRQILEKYVEYADAELHKYGPKKPSVRHLVKPLLGIFHAESGAGVWRRAVDNSLRNAET-VGALLKETLCVLPDFVLDSPP 419          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_024368041.1 (uncharacterized protein LOC112278670 isoform X3 [Physcomitrella patens])

HSP 1 Score: 312.4 bits (799), Expect = 2.300e-81
Identity = 171/338 (50.59%), Postives = 224/338 (66.27%), Query Frame = 0
Query:   92 SLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPF-YWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLR--RLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKP 427
            S+APMM++TD H+R   RL+SK   LYTEM+ A T+   +D+ D+FLKFN   +HP+VLQLGGSDP  L +AS +A  Y YD INLNCGCPSE+V+G GCFGA+LM E   VA+   A+ EGS G  P+TVKCRIGVDD DSY+ L +FV  VS +SP +HFVVHARKAIL GLSP  NR +PPLKY +VY L ++FP+L+FTLNGGV++   V   L+EGV GVM+GRA    P+    ++D  +YG     P LTR +IL +Y  YA+ E  + G +    R L KP+  +F  E     +R A+D +L +    V  +L+    VLP  +L+  P
Sbjct:    7 SVAPMMDWTDNHYRTLARLMSKHAWLYTEMVVADTIIHQQDNLDKFLKFN-EVQHPIVLQLGGSDPEKLLKASLLASVYEYDEINLNCGCPSEKVAGHGCFGASLMLESGLVAECMAAIAEGSPG-TPVTVKCRIGVDDFDSYDLLHKFVTTVSSSSPTQHFVVHARKAILKGLSPAANRTIPPLKYEYVYALIRDFPNLKFTLNGGVVNTHQVNEALQEGVFGVMLGRAAYNYPWATLGNVDNSVYG--DSTPRLTRRQILEKYVEYADAELHKYGPKKPSVRHLVKPLLGIFHAESGAGVWRRAVDNSLRNAET-VGALLKETLCVLPDFVLDSPP 339          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_013649454.1 (uncharacterized protein LOC106354130 [Brassica napus])

HSP 1 Score: 312.0 bits (798), Expect = 3.000e-81
Identity = 165/374 (44.12%), Postives = 236/374 (63.10%), Query Frame = 0
Query:   70 IRGATGGGHDEMTGPLLLDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSD-IDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLD-PTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH 440
            ++  T  G    +    L    S+APMME+TD H+R   R+++K   LYTEMI A TL   + + DRFL F +P +HP+VLQLGGS+   L++A++++ PY YD INLNCGCPS +V+G GCFG +LM  P+ V +  +A+ + +   +P+TVKCRIGVDD DSY++L +FV +VS  SP RHF+VH+RKA+LGG+SP  NRR+PPLKY + Y L ++FP LRFT+NGG+ S   V   L+EG +GVMVGRA    P+     +D  +YG    + GLTR ++L QY  YA+     +G GR   R L KP+ ++F  E     ++   D A  +  T+G   +LE +   +P ++L+    SP   +PE+  H
Sbjct:   28 LKQPTSAGFSTTSSSPYLPPLFSVAPMMEWTDNHYRMLARIITKHAWLYTEMIAAQTLVHQQTNLDRFLAF-SPQQHPIVLQLGGSNVESLAKAAKLSHPYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAIADNT--NVPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSISKVNAALREGAYGVMVGRAAYNNPWQTLGLVDTAVYGV--PSSGLTRRQVLEQYQVYADSVLGTQGNGRPNVRDLVKPLLNIFHSENGNSLWKRKADAAFKECKTVG--SLLEESLKAIPDSVLD----SPISESPESGEH 390          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_010545132.1 (PREDICTED: uncharacterized protein LOC104817580 [Tarenaya hassleriana])

HSP 1 Score: 310.1 bits (793), Expect = 1.100e-80
Identity = 162/347 (46.69%), Postives = 221/347 (63.69%), Query Frame = 0
Query:   92 SLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFY-WSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATA----VLPPALLEVKPGSPSI 432
            S+APMM++TD H+R   RL+S    LYTEMI A TL  +    D+FL F +P +HP+VLQLGGS+   L++A+++A PY YD INLNCGCPS RV+G GCFG +LM  P+ V +  +A+   +   +P+TVKCRIGVDD DSY++L +FV +VS  SP RHF++H+RKA+L G+SP  NRR+PPLKY + Y L ++FP+L+FT+NGG+ S  +V   L+EG HGVMVGRA    P+     +D  +YG    + GLTR ++L QY  Y +      G GR   R + KP+ HLF  EP    ++   D AL   +     + ET TA    VL   + EV PG   +
Sbjct:   37 SVAPMMDWTDHHYRTLARLISSHAWLYTEMIAADTLLYHHPHLDKFLAF-SPHQHPIVLQLGGSNVQSLAKAAQLATPYGYDEINLNCGCPSPRVAGHGCFGVSLMLHPQLVGEAMSAIAANT--NVPVTVKCRIGVDDHDSYDELCDFVYKVSILSPTRHFIIHSRKALLDGISPADNRRIPPLKYEYYYALLRDFPNLKFTINGGITSVSEVNAALREGAHGVMVGRAAYNNPWQTLGHVDTAVYGV--PSSGLTRRQVLEQYHVYGDSVIGTHGNGRPNVRDVVKPLLHLFRSEPGNGLWKRRADAALRKCSTVKSFLEETLTAIPDFVLDSPVSEVPPGQEDL 378          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_018454243.1 (PREDICTED: uncharacterized protein LOC108825454 isoform X2 [Raphanus sativus])

HSP 1 Score: 309.7 bits (792), Expect = 1.500e-80
Identity = 169/383 (44.13%), Postives = 238/383 (62.14%), Query Frame = 0
Query:   54 MIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSD-IDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLD-PTLGVRQVLETATAVLPPALLEVK-PGSPSI 432
            M   S S++  H    ++ AT       +    L    S+APMME+TD H+R   R+++K   LYTEMI A TL   + + DRFL F +P +HP+VLQLGGS+   L++A++++ PY YD INLNCGCPS +V+G GCFG  LM  P+ V +  +A+ + +   +P+TVKCRIGVDD DSY++L +FV +VS  SP RHF+VH+RKA+LGG+SP  NRR+PPLKY + Y L ++FP L+FT+NGG+ S   V   L+EG HGVMVGRA    P+     +D  LYG    + GLTR ++L QY  YA+     +G GR   R L KP+ ++F  E     ++   D A  +  T+G   +LE +   +P ++L+    GSP I
Sbjct:   14 MFKCSSSLRRFH-SPMLKQATAARFSTTSSSPYLPPLFSVAPMMEWTDNHYRTLARIITKHAWLYTEMIAAQTLIHQQTNLDRFLAF-SPQQHPIVLQLGGSNVESLAKAAKLSHPYGYDEINLNCGCPSPKVAGHGCFGVTLMLNPKLVGEAMSAIADNT--NVPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLKFTINGGITSVSKVNAALREGAHGVMVGRAAYNNPWQTLGLVDTALYGV--PSSGLTRRQVLEQYQVYADSVLGTQGNGRPNVRDLVKPLLNIFHSENGNSLWKRRADAAFKECKTVG--SLLEESLKAVPDSVLDSPISGSPEI 388          
The following BLAST results are available for this feature:
BLAST of NO12G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856098.11.300e-16972.33hypothetical protein NGA_0331800 [Nannochloropsis ... [more]
CBJ49172.18.800e-10255.39FAD binding / catalytic/ tRNA dihydrouridine synth... [more]
CEL98082.17.500e-9351.82unnamed protein product [Vitrella brassicaformis C... [more]
CEL98066.11.400e-9151.54unnamed protein product [Vitrella brassicaformis C... [more]
XP_005715794.12.600e-8549.30unnamed protein product [Chondrus crispus] >CDF359... [more]
XP_024368039.13.500e-8250.44uncharacterized protein LOC112278670 isoform X1 [P... [more]
XP_024368041.12.300e-8150.59uncharacterized protein LOC112278670 isoform X3 [P... [more]
XP_013649454.13.000e-8144.12uncharacterized protein LOC106354130 [Brassica nap... [more]
XP_010545132.11.100e-8046.69PREDICTED: uncharacterized protein LOC104817580 [T... [more]
XP_018454243.11.500e-8044.13PREDICTED: uncharacterized protein LOC108825454 is... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010120NSK010120Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01950.1NO12G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592242gene_5353Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g12gene4676Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01950.1NO12G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01950 ID=NO12G01950|Name=NO12G01950|organism=Nannochloropsis oceanica|type=gene|length=1989bp
AGACAGCACAGCTCACAGCGGAGGACTAGAGACAAACACTTCTCGTCTTG
CGCATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTT
CCTAATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTG
TACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGG
AAGCGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCG
AATGGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCG
GTCCCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTAC
ACTGACAGgtatgaaggtaatatgtgggcgcattttgctcaagacatacg
ggaggtaattgtttggcgtgtatgccccacgacggcagtcgaaggaatga
ggaactccctctagtcatcgtgctcacgtccctaccgctcccaattttcg
acagGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGTCCTC
TACACTGAAATGATTACGGCCCCTACCCTCTACCTAAACAAAGACAGCCG
AGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTGCTAC
AACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGATTGCT
CTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGAGTGA
GCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAGCCTG
AACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGGAAGA
ATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATAGCTA
TGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCGGTCA
GGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAGTCCT
GATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATCGTTT
GTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTGTTGT
CTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGTGATG
GTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTGATGC
ACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGGGAAA
TCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGAGGGA
GGGAGGTTGAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCGCGGG
GGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTACTTG
ACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGTGCTG
CCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGGCACC
GGAGACAGTTCGGCATTAGATGGGGCTGCTAAGAGGAACCTTTATTGAAG
TAAGGAGGGATGTAGAATATGAGGTAAGCGACCGCGATTTTTGAAAAAAG
AAAATATGACGATAAAGTCGAAGAAATGTACAACAGCGTTGAAGAAAGAG
AGAGGGGGTAAGCGCTTAAAAACTCATCGGCGTCATCAAGGGGGGGCCCT
CCATCATTTTGGTTCCCTCTCTGCCCTTGATGATGAGAGCTAACTCGCTT
GGGATTAGCGAGACTAACGGCTTTATATGTCAAAAGCGCCGATCTAGCCA
CGCGCTAAAAGCTGGATAGTTCAAGAAACAAAGAAGACTTTGTTAGTGAG
ACAGAGAAGGGAGGTGACGGAGAAAGTGGGAACCATCGGGAGAAGCAAAG
TACAAATGTAGGACGCGTTCGTGTGTTCCAAAAGCAGCTTCCTAAAGACG
CAAAGGAAGAAGTAAAAACTCCTATCGGTATTTCGAAAA
back to top

protein sequence of NO12G01950.1

>NO12G01950.1-protein ID=NO12G01950.1-protein|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MSRGRSPRRRRRRAPFLIIVIMLAAVTSGLAFVQQQARLPAKLRKLTIGK
RMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYT
DRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVL
QLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREP
ERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPV
RHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVL
SYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGE
ILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALL
DPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH*
back to top
Synonyms
Publications