NO12G01950.1, NO12G01950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01950.1
Unique NameNO12G01950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1843
Alignment locationchr12:553790..555778 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:553790..555778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01950.1 vs.
Match: XP_005856098.1 (hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526]; EKU20234.1 hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526]; EWM25795.1 trna-dihydrouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 609.0 bits (1569), Expect = 1.200e-170
Identity = 307/449 (68.37%), Postives = 353/449 (78.62%), Query Frame = 0 
Query:    4 GRSPRRRRRRAPFLIIV------IMLAAVT-------SGLAFVQQQARLPAKLRKLTIGKRMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH 440
            G  P+ +R R+P LI++        +A +T       S  AFVQ   R+    R             S S+         RG   G   E  G    DER+SLAPMMEYTDRH RF LRLLSKRMVLYTEMITAPTLY N++SRDRFL+FN+PAEHPVVLQLGGSDP  L+EASR+A PY Y+A+NLNCGCPSERVSG+GCFGAALMREPERVA++CTAM EGS+G+IP+TVKCRIGVDD+DSYEQLA FV  VS ASPVRHF+VHARKAILGGLSPDQNR+VPPLKYPFVYRL +EFPHLRFTLNGGVLSYEDV  HL+EGVHGVM+GRA++ARPFYWSD+DAR++G+   NPGLTR E+L +YGAYA+EE+ R G R+RRLL KPVH+LFAGEPMGKRFRA LDQALL+P+L VRQVLE ATAV+P ALLEV PGS +IPAPE VRH
Sbjct:    3 GSIPQTKRSRSPNLIVIKTASIFTFIAVMTGAPGAARSTAAFVQHHGRMSKNWRM------------SRSVARTMTSSSTRGR--GASQEDGGSEGPDERVSLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNRKVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGGPRMRRLLIKPVHNLFAGEPMGKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVPPGSAAIPAPEAVRH 437
The following BLAST results are available for this feature:
BLAST of NO12G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856098.11.200e-17068.37hypothetical protein NGA_0331800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01950NO12G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01950.1NO12G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01950.1.cds1NO12G01950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01950.1.cds2NO12G01950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01950.1 ID=NO12G01950.1|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp
AGACAGCACAGCTCACAGCGGAGGACTAGAGACAAACACTTCTCGTCTTG
CGCATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTT
CCTAATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTG
TACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGG
AAGCGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCG
AATGGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCG
GTCCCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTAC
ACTGACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGT
CCTCTACACTGAAATGATTACGGCCCCTACCCTCTACCTAAACAAAGACA
GCCGAGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTG
CTACAACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGAT
TGCTCTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGA
GTGAGCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAG
CCTGAACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGG
AAGAATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATA
GCTATGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCG
GTCAGGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAG
TCCTGATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATC
GTTTGTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTG
TTGTCTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGT
GATGGTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTG
ATGCACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGG
GAAATCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGA
GGGAGGGAGGTTGAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCG
CGGGGGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTA
CTTGACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGT
GCTGCCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGG
CACCGGAGACAGTTCGGCATTAGATGGGGCTGCTAAGAGGAACCTTTATT
GAAGTAAGGAGGGATGTAGAATATGAGGTAAGCGACCGCGATTTTTGAAA
AAAGAAAATATGACGATAAAGTCGAAGAAATGTACAACAGCGTTGAAGAA
AGAGAGAGGGGGTAAGCGCTTAAAAACTCATCGGCGTCATCAAGGGGGGG
CCCTCCATCATTTTGGTTCCCTCTCTGCCCTTGATGATGAGAGCTAACTC
GCTTGGGATTAGCGAGACTAACGGCTTTATATGTCAAAAGCGCCGATCTA
GCCACGCGCTAAAAGCTGGATAGTTCAAGAAACAAAGAAGACTTTGTTAG
TGAGACAGAGAAGGGAGGTGACGGAGAAAGTGGGAACCATCGGGAGAAGC
AAAGTACAAATGTAGGACGCGTTCGTGTGTTCCAAAAGCAGCTTCCTAAA
GACGCAAAGGAAGAAGTAAAAACTCCTATCGGTATTTCGAAAA
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protein sequence of NO12G01950.1

>NO12G01950.1-protein ID=NO12G01950.1-protein|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MSRGRSPRRRRRRAPFLIIVIMLAAVTSGLAFVQQQARLPAKLRKLTIGK
RMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYT
DRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVL
QLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREP
ERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPV
RHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVL
SYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGE
ILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALL
DPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH*
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mRNA from alignment at chr12:553790..555778+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01950.1 ID=NO12G01950.1|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at chr12:553790..555778+ (Nannochloropsis oceanica)
AGACAGCACAGCTCACAGCGGAGGACTAGAGACAAACACTTCTCGTCTTG
CGCATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTT
CCTAATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTG
TACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGG
AAGCGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCG
AATGGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCG
GTCCCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTAC
ACTGACAGGTATGAAGGTAATATGTGGGCGCATTTTGCTCAAGACATACG
GGAGGTAATTGTTTGGCGTGTATGCCCCACGACGGCAGTCGAAGGAATGA
GGAACTCCCTCTAGTCATCGTGCTCACGTCCCTACCGCTCCCAATTTTCG
ACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGTCCTC
TACACTGAAATGATTACGGCCCCTACCCTCTACCTAAACAAAGACAGCCG
AGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTGCTAC
AACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGATTGCT
CTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGAGTGA
GCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAGCCTG
AACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGGAAGA
ATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATAGCTA
TGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCGGTCA
GGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAGTCCT
GATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATCGTTT
GTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTGTTGT
CTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGTGATG
GTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTGATGC
ACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGGGAAA
TCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGAGGGA
GGGAGGTTGAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCGCGGG
GGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTACTTG
ACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGTGCTG
CCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGGCACC
GGAGACAGTTCGGCATTAGATGGGGCTGCTAAGAGGAACCTTTATTGAAG
TAAGGAGGGATGTAGAATATGAGGTAAGCGACCGCGATTTTTGAAAAAAG
AAAATATGACGATAAAGTCGAAGAAATGTACAACAGCGTTGAAGAAAGAG
AGAGGGGGTAAGCGCTTAAAAACTCATCGGCGTCATCAAGGGGGGGCCCT
CCATCATTTTGGTTCCCTCTCTGCCCTTGATGATGAGAGCTAACTCGCTT
GGGATTAGCGAGACTAACGGCTTTATATGTCAAAAGCGCCGATCTAGCCA
CGCGCTAAAAGCTGGATAGTTCAAGAAACAAAGAAGACTTTGTTAGTGAG
ACAGAGAAGGGAGGTGACGGAGAAAGTGGGAACCATCGGGAGAAGCAAAG
TACAAATGTAGGACGCGTTCGTGTGTTCCAAAAGCAGCTTCCTAAAGACG
CAAAGGAAGAAGTAAAAACTCCTATCGGTATTTCGAAAA
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Coding sequence (CDS) from alignment at chr12:553790..555778+

>NO12G01950.1 ID=NO12G01950.1|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr12:553790..555778+ (Nannochloropsis oceanica)
ATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTTCCT
AATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTGTAC
AGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGGAAG
CGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCGAAT
GGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCGGTC
CCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTACACT
GACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGTCCT
CTACACTGAAATGATTACGGCCCCTACCCTCTACCTAAACAAAGACAGCC
GAGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTGCTA
CAACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGATTGC
TCTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGAGTG
AGCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAGCCT
GAACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGGAAG
AATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATAGCT
ATGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCGGTC
AGGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAGTCC
TGATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATCGTT
TGTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTGTTG
TCTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGTGAT
GGTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTGATG
CACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGGGAA
ATCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGAGGG
AGGGAGGTTGAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCGCGG
GGGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTACTT
GACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGTGCT
GCCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGGCAC
CGGAGACAGTTCGGCATTAG
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Synonyms
Publications