NO12G01880, NO12G01880 (gene) Nannochloropsis oceanica

Overview
NameNO12G01880
Unique NameNO12G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1983
Alignment locationchr12:540638..542620 -

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Properties
Property NameValue
DescriptionMitochodrial transcription termination factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:540638..542620 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO12G01880 vs. NCBI_GenBank
Match: EWM25799.1 (Mitochodrial transcription termination factor [Nannochloropsis gaditana])

HSP 1 Score: 688.3 bits (1775), Expect = 2.200e-194
Identity = 386/500 (77.20%), Postives = 428/500 (85.60%), Query Frame = 0
Query:    1 MPAAEAFAGLPRSRGKRSAHQQHQLQQERSVAVGPVMAGWMSAAGYDEGFG-SKGQDEDDEAKLVERVVEQLVVQRGLGARGVMQVVRKTNPSDLALRWKGWRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLGFEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVVLLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKAFVKRLPPVMGYPVDWELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMARTRA 500
            +P A AF+G   SR        H     RSVA+   +AGWMS AGYD+G+G ++  D D+ A L   V+++L  +RGL   GV QV+RKT P DLA RW+GWRRSCDCLLSLGFSAQNVT+ILQ S AFLHELDPEADIRRVVFYLWEDLGF  WGKIG GL SWQRHK+KVVT AP+VLRRKPEGGVE+TVATLEQVGMPTKY+LDASFRFPSLLNVPPSLIF VSAYLSSTDVGF+PRDLG LYRRNPWLLHPRTVEQLRPVVAFL+E L VQR+HVVLRGYPQVVL+SV+ DLQPRVVLLQSLGIP  QIGCMVEAFPLLLSLPLEEQMLPVL+FFQA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+K F+KRLPPV+GYPVDWELRKKW LFQELGL + D A FPG+ SYSLHDRLIPRL+FCR+QGV  +DVV LRV MAGGDAAFAKEF+GV+PE Y++F+L+YK R K+ R A+TRA
Sbjct:   91 VPGAHAFSGPTPSRSSTLGSHHH----PRSVALESTIAGWMSVAGYDQGYGDNRENDRDERASLYALVMDELAHRRGLSVSGVRQVIRKTKPQDLAARWRGWRRSCDCLLSLGFSAQNVTSILQGSSAFLHELDPEADIRRVVFYLWEDLGFNSWGKIGLGLGSWQRHKYKVVTTAPEVLRRKPEGGVEETVATLEQVGMPTKYILDASFRFPSLLNVPPSLIFCVSAYLSSTDVGFRPRDLGALYRRNPWLLHPRTVEQLRPVVAFLREELQVQRMHVVLRGYPQVVLKSVNADLQPRVVLLQSLGIPSQQIGCMVEAFPLLLSLPLEEQMLPVLFFFQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDVKEFIKRLPPVLGYPVDWELRKKWALFQELGLDASDFAGFPGFVSYSLHDRLIPRLDFCRRQGVLAQDVVALRVVMAGGDAAFAKEFIGVDPEAYEEFLLDYKVRRKEARAAQTRA 586          
BLAST of NO12G01880 vs. NCBI_GenBank
Match: CBJ32380.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 156.4 bits (394), Expect = 3.000e-34
Identity = 141/391 (36.06%), Postives = 207/391 (52.94%), Query Frame = 0
Query:   98 WKGWRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLGFEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGG-VEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVVLLQS-LGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKAFVKRLPPVMGYPVDWELRKKWG-LFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEY 486
            WK WR++ D L S GFS  +V  +L      L  LD E  +   +         E   ++G   +  +R    V+ +AP+VL  +P+G    + V  L  +G+  +++   + R+P LL VPP   F ++A+L+S +VG K  ++G+L R+ PWL+      Q+ PVV FL+   GV  V  VLR YP+V+  S+  +L PRV  L S +G+    +  +++ FPL+ +LPL    +  +      XXXXXXXXXXXXXXXXXXXXXXX                  ++  FV RLPPV+GY V+  L  K   L +++GL   D+  FP +FSY L   + PR EF   +G     +V L + +  GDA FA++   V+P  Y DF   Y
Sbjct:  235 WKRWRQNLDGLRSKGFSGTDVCNMLALCPQLL-ALDFEGQVVPTM---------ELLRQLGMRPTDVRR----VIRKAPEVLAPRPDGSTAAEAVDVLRTLGLRRRHLKMEAMRWPQLLAVPPGSFFQLAAFLASEEVGIKSTNIGSLIRQAPWLVLQPIDGQMLPVVRFLRIA-GVVDVERVLRAYPKVLCASIRGELAPRVRFLWSDVGVSEEDLPRVLQTFPLVFALPLSR--MKDVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERHMAGVVRYLKRLGVQNVGRFVSRLPPVLGYDVETNLAPKMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRG-RPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKAY 607          
BLAST of NO12G01880 vs. NCBI_GenBank
Match: XP_009035352.1 (hypothetical protein AURANDRAFT_62430 [Aureococcus anophagefferens] >EGB10571.1 hypothetical protein AURANDRAFT_62430 [Aureococcus anophagefferens])

HSP 1 Score: 129.0 bits (323), Expect = 5.100e-26
Identity = 119/295 (40.34%), Postives = 161/295 (54.58%), Query Frame = 0
Query:  187 VEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVVLLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKAFVKRLPPVMGYPVDWELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDF 482
            + DTV  L  VG+ TK+V +   R+P LL++    +  V+ Y++S  +GF+ R +G+LYR NPWLL    V  +R     L++ +GV  V  V+R YP+ +L      L+P  VL +  G+    +  +VEAFPLL    L++ M PVL F+   XXXXXXXXXXXXXXXXXXXXXXXXX                +   FV RLPPV+ Y VD +LR K     +  L   D+  FP +FSY L   + PR  F +Q GV      L  +    GD  FA   +GV+P+ Y  F
Sbjct:  191 ISDTVLLLTSVGVRTKHVKEMVVRWPQLLSIEMPQMLAVTDYINS--LGFE-RSIGSLYRANPWLL-AAPVATVRDAATVLRDEVGVTNVENVVRAYPRALLSDRESLLRPLDVLRERAGVDEADLASLVEAFPLLFG--LDDAMGPVLDFWL--XXXXXXXXXXXXXXXXXXXXXXXXXATMRANVKFLEGIGVVNTARFVTRLPPVLAYDVDRDLRPKMAELVKCALSVYDVVRFPAYFSYPLDGVIKPRTAFLKQLGVPITTFPLQAL-FTPGDKEFASRVLGVDPKRYAAF 476          
BLAST of NO12G01880 vs. NCBI_GenBank
Match: XP_005712849.1 (unnamed protein product [Chondrus crispus] >CDF33046.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 86.3 bits (212), Expect = 3.800e-13
Identity = 139/425 (32.71%), Postives = 201/425 (47.29%), Query Frame = 0
Query:   79 ARGVMQVVRKTNPSDLALRWKGWRRSCDCLLSLGFSAQNVTTILQRSGA-FLHELDPEADIRRVVFYLWEDLGFEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQR---VHVVLRGYPQVVLRSVSEDLQPRVVLLQS--LGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKAFVKRLPPVMGYPVDWELRKKWG-LFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVS-TEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMA 496
            A  +  V   T  + + L    W    D L S   +   ++ I +R G   L  L+P A +  V+ YL             + +      + +V+ + PD+L + PE  +   V  LE  G+  K +     R+P LL +    I  V+A+L +  VGF   +L +L RR PW+L      ++ P +++LK  L +     V   +R  P  +L   S D   +V    S  +G+    +   + +FP  L                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ++   VKRLPP++GY +D  +  K   + QELGL S D+  FPG+FSYS    + PR +F + +G S TE  + + +G+   D  F      V    Y  F   +    K E+ A
Sbjct:   68 AADLAYVSLSTGTATVELASPTWSMLMDTLASHDINGSVLSCIAERLGVPELLRLEP-AHVVSVLHYL------------STYVQLADAERNRVIIRRPDIL-KSPE-HLRKAVEALETSGLRLKDIKTVVQRWPGLLLLDARKINRVTAFLQTPAVGFSLPNLRSLLRRAPWVLVYDIGSEMIPAISYLKRVLDLPNRAPVDQFIRARP--LLLGTSPDAMQKVTDFMSDVVGLTPTMLSVALRSFP-PLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGIINVGRIVKRLPPILGYDLDTNIIPKMEYIEQELGLSSYDILTFPGYFSYSFEKCIEPRTKFLQAKGRSVTESGLNMALGLK--DEDFCVRVAKVPISQYYAFKAAFLLGRKNEKAA 472          
The following BLAST results are available for this feature:
BLAST of NO12G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25799.12.200e-19477.20Mitochodrial transcription termination factor [Nan... [more]
CBJ32380.13.000e-3436.06conserved unknown protein [Ectocarpus siliculosus][more]
XP_009035352.15.100e-2640.34hypothetical protein AURANDRAFT_62430 [Aureococcus... [more]
XP_005712849.13.800e-1332.71unnamed protein product [Chondrus crispus] >CDF330... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010110NSK010110Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01880.1NO12G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592210gene_5345Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g5gene4669Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01880.1NO12G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01880 ID=NO12G01880|Name=NO12G01880|organism=Nannochloropsis oceanica|type=gene|length=1983bp
ATGCCAGCTGCCGAAGCCTTTGCAGGCCTACCACGCTCAAGAGGCAAACG
CTCCGCCCACCAACAGCACCAGCTGCAGCAAGAACGAAGCGTGGCCGTCG
GCCCGGTCATGGCTGGCTGGATGTCCGCCGCCGGCTATGATGAAGGCTTT
GGTAGTAAGGGCCAAGATGAAGATGATGAGGCGAAGCTGGTGGAACGGGT
GGTGGAGCAGTTGGTGGTTCAACGTGGGTTAGGGGCAAGGGGGGTGATGC
AGGTGGTTCGTAAAACCAACCCGTCAGACTTAGCTCTGCGATGGAAGGGA
TGGAGACGAAGCTGCGACTGTTTGTTGTCTCTGGGCTTTTCGGCACAGAA
TGTCACGACAATTTTACAGAGAAGTGGTGCTTTTTTGCATGAGCTTGACC
CGGAAGCTGATATTCGACGGGTTGTGTTTTACCTCTGGGAGGACCTGGGT
TTTGAGAAGTGGGGCAAGATAGGCTCAGGCCTCTCATCATGGCAACGGCA
TAAATTTAAGGTGGTGACGCAGGCGCCGGATGTGTTGAGGAGGAAGCCGG
AGGGGGGGGTGGAGGACACGGTGGCAACTTTGGAGCAGGTGGGGATGCCT
ACGAAGTACGTGCTTGACGCTTCGTTTCGGTTCCCCTCTCTCTTGAACGT
CCCGCCAAGTCTGATTTTCTTCGTGTCGGCCTACCTCTCCTCTACGGATG
TGGGGTTTAAGCCACGGGATTTGGGAACGCTGTACAGGCGGAACCCGTGG
TTGTTGCACCCACGAACAGTAGAGCAGTTGAGGCCGGTGGTGGCTTTTTT
GAAGGAGGGGTTGGGGGTGCAGCGCGTGCACGTGGTCTTGCGTGGGTACC
CACAGGTGGTGCTGAGGAGCGTGAGCGAGGATTTACAGCCACGGGTGGTG
TTGTTGCAGAGCTTAGGAATCCCACTGCTGCAGATCGGATGCATGGTGGA
GGCCTTCCCACTCTTGTTATCCCTGCCGTTGGAGGAACAGATGTTGCCAG
TGCTGTATTTTTTTCAGGCCGAGTTGGGGTTCTCGAGGCATGAGCTTTGG
ATGATGTTGCGGTCGTTTCCCGCCGTGTTGGACTTGTCGGTAGAGGAGGA
TATCCGGCCGGTGGTTCGCTTTTTGAGGGATGAAGTGGGCTTGAAAGACT
TGAAGGCCTTTGTGAAGAGATTACCACCTGTGATGGGGTACCCGGTTGAT
TGGGAGCTACGGAAGAAGTGGGGCTTGTTTCAGGAGCTGGGGTTGGGGAG
TTTGGACTTGGCGGAGTTTCCTGGGTGGTTCTCGTATTCTTTGCACGATC
GATTGATACCTCGATTGGAGTTTTGTAGACAGCAGGGGGTGTCCACAGAG
GATGTAGTATTGTTGAGGGTGGGTATGGCGGGAGGGGATGCAGCGTTTGC
CAAGGAGTTTGTTGGCGTAGAGCCGGAAACATACGATGATTTCATGCTGG
AGTATAAAACGAGGACGAAACAAGAAAGGATGGCACGGACGAGGGCAAAG
CGGAGAGCATCGGGAGGAGGAGGAGTTGGAGGGGATGGGAGGAAAACAAG
GGAGCTGGAGGAAGACGAAGAGTTTTTCCCCCCCGAGGCTGTgtgcgatt
gaggcttgaggcggagcgattgaggcgtgaggcggaaggatggagttgaa
agcagaagtctgaggggtggatgtgttagTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTATTCACAAATGGTAGTGACAGTAATAGTAGCGTTCACGG
TTCCCAGGAGCGAGCAGGAAATAGATGCATGATGAAGTGGTCCAGCACCT
GCCTTGTACAAGTAATAGGACAGAGGGATCGAAATGATGACACAGAAGAA
GAAAGAATGCAAACCGAGGTAATGACTCATTAA
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protein sequence of NO12G01880.1

>NO12G01880.1-protein ID=NO12G01880.1-protein|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MPAAEAFAGLPRSRGKRSAHQQHQLQQERSVAVGPVMAGWMSAAGYDEGF
GSKGQDEDDEAKLVERVVEQLVVQRGLGARGVMQVVRKTNPSDLALRWKG
WRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLG
FEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMP
TKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPW
LLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVV
LLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAELGFSRHELW
MMLRSFPAVLDLSVEEDIRPVVRFLRDEVGLKDLKAFVKRLPPVMGYPVD
WELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTE
DVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMARTRAK
RRASGGGGVGGDGRKTRELEEDEEFFPPEAVSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSVVVVVVVVVVVVVFTNGSDSNSSVHGSQERAGNRCMMK
WSSTCLVQVIGQRDRNDDTEEERMQTEVMTH*
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Synonyms
Publications