NO12G01880.1, NO12G01880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01880.1
Unique NameNO12G01880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1896
Alignment locationchr12:540638..542620 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:540638..542620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01880.1 vs.
Match: EWM25799.1 (Mitochodrial transcription termination factor [Nannochloropsis gaditana])

HSP 1 Score: 776.5 bits (2004), Expect = 6.100e-221
Identity = 383/505 (75.84%), Postives = 430/505 (85.15%), Query Frame = 0 
Query:    1 MPAAEAFAGLPRSRGKRSAHQQHQLQQERSVAVGPVMAGWMSAAGYDEGFG-SKGQDEDDEAKLVERVVEQLVVQRGLGARGVMQVVRKTNPSDLALRWKGWRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLGFEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMPTKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPWLLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVVLLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAELGFSRHELWMMLRSFPAVLDLSVEEDIRPVVRFLRDEVGLKDLKAFVKRLPPVMGYPVDWELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTEDVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMARTRAKRRAS 505
            +P A AF+G   SR        H     RSVA+   +AGWMS AGYD+G+G ++  D D+ A L   V+++L  +RGL   GV QV+RKT P DLA RW+GWRRSCDCLLSLGFSAQNVT+ILQ S AFLHELDPEADIRRVVFYLWEDLGF  WGKIG GL SWQRHK+KVVT AP+VLRRKPEGGVE+TVATLEQVGMPTKY+LDASFRFPSLLNVPPSLIF VSAYLSSTDVGF+PRDLG LYRRNPWLLHPRTVEQLRPVVAFL+E L VQR+HVVLRGYPQVVL+SV+ DLQPRVVLLQSLGIP  QIGCMVEAFPLLLSLPLEEQMLPVL+FFQAELGFSRHELW MLRSFPAVLDLS+EE+IRPVV FLRD+VGL D+K F+KRLPPV+GYPVDWELRKKW LFQELGL + D A FPG+ SYSLHDRLIPRL+FCR+QGV  +DVV LRV MAGGDAAFAKEF+GV+PE Y++F+L+YK R K+ R A+TRA R ++
Sbjct:   91 VPGAHAFSGPTPSRSSTLGSHHHP----RSVALESTIAGWMSVAGYDQGYGDNRENDRDERASLYALVMDELAHRRGLSVSGVRQVIRKTKPQDLAARWRGWRRSCDCLLSLGFSAQNVTSILQGSSAFLHELDPEADIRRVVFYLWEDLGFNSWGKIGLGLGSWQRHKYKVVTTAPEVLRRKPEGGVEETVATLEQVGMPTKYILDASFRFPSLLNVPPSLIFCVSAYLSSTDVGFRPRDLGALYRRNPWLLHPRTVEQLRPVVAFLREELQVQRMHVVLRGYPQVVLKSVNADLQPRVVLLQSLGIPSQQIGCMVEAFPLLLSLPLEEQMLPVLFFFQAELGFSRHELWTMLRSFPAVLDLSIEENIRPVVSFLRDDVGLPDVKEFIKRLPPVLGYPVDWELRKKWALFQELGLDASDFAGFPGFVSYSLHDRLIPRLDFCRRQGVLAQDVVALRVVMAGGDAAFAKEFIGVDPEAYEEFLLDYKVRRKEARAAQTRADRESA 591
The following BLAST results are available for this feature:
BLAST of NO12G01880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25799.16.100e-22175.84Mitochodrial transcription termination factor [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01880NO12G01880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01880.1NO12G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01880.1.cds1NO12G01880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01880.1.cds2NO12G01880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01880.1 ID=NO12G01880.1|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp
ATGCCAGCTGCCGAAGCCTTTGCAGGCCTACCACGCTCAAGAGGCAAACG
CTCCGCCCACCAACAGCACCAGCTGCAGCAAGAACGAAGCGTGGCCGTCG
GCCCGGTCATGGCTGGCTGGATGTCCGCCGCCGGCTATGATGAAGGCTTT
GGTAGTAAGGGCCAAGATGAAGATGATGAGGCGAAGCTGGTGGAACGGGT
GGTGGAGCAGTTGGTGGTTCAACGTGGGTTAGGGGCAAGGGGGGTGATGC
AGGTGGTTCGTAAAACCAACCCGTCAGACTTAGCTCTGCGATGGAAGGGA
TGGAGACGAAGCTGCGACTGTTTGTTGTCTCTGGGCTTTTCGGCACAGAA
TGTCACGACAATTTTACAGAGAAGTGGTGCTTTTTTGCATGAGCTTGACC
CGGAAGCTGATATTCGACGGGTTGTGTTTTACCTCTGGGAGGACCTGGGT
TTTGAGAAGTGGGGCAAGATAGGCTCAGGCCTCTCATCATGGCAACGGCA
TAAATTTAAGGTGGTGACGCAGGCGCCGGATGTGTTGAGGAGGAAGCCGG
AGGGGGGGGTGGAGGACACGGTGGCAACTTTGGAGCAGGTGGGGATGCCT
ACGAAGTACGTGCTTGACGCTTCGTTTCGGTTCCCCTCTCTCTTGAACGT
CCCGCCAAGTCTGATTTTCTTCGTGTCGGCCTACCTCTCCTCTACGGATG
TGGGGTTTAAGCCACGGGATTTGGGAACGCTGTACAGGCGGAACCCGTGG
TTGTTGCACCCACGAACAGTAGAGCAGTTGAGGCCGGTGGTGGCTTTTTT
GAAGGAGGGGTTGGGGGTGCAGCGCGTGCACGTGGTCTTGCGTGGGTACC
CACAGGTGGTGCTGAGGAGCGTGAGCGAGGATTTACAGCCACGGGTGGTG
TTGTTGCAGAGCTTAGGAATCCCACTGCTGCAGATCGGATGCATGGTGGA
GGCCTTCCCACTCTTGTTATCCCTGCCGTTGGAGGAACAGATGTTGCCAG
TGCTGTATTTTTTTCAGGCCGAGTTGGGGTTCTCGAGGCATGAGCTTTGG
ATGATGTTGCGGTCGTTTCCCGCCGTGTTGGACTTGTCGGTAGAGGAGGA
TATCCGGCCGGTGGTTCGCTTTTTGAGGGATGAAGTGGGCTTGAAAGACT
TGAAGGCCTTTGTGAAGAGATTACCACCTGTGATGGGGTACCCGGTTGAT
TGGGAGCTACGGAAGAAGTGGGGCTTGTTTCAGGAGCTGGGGTTGGGGAG
TTTGGACTTGGCGGAGTTTCCTGGGTGGTTCTCGTATTCTTTGCACGATC
GATTGATACCTCGATTGGAGTTTTGTAGACAGCAGGGGGTGTCCACAGAG
GATGTAGTATTGTTGAGGGTGGGTATGGCGGGAGGGGATGCAGCGTTTGC
CAAGGAGTTTGTTGGCGTAGAGCCGGAAACATACGATGATTTCATGCTGG
AGTATAAAACGAGGACGAAACAAGAAAGGATGGCACGGACGAGGGCAAAG
CGGAGAGCATCGGGAGGAGGAGGAGTTGGAGGGGATGGGAGGAAAACAAG
GGAGCTGGAGGAAGACGAAGAGTTTTTCCCCCCCGAGGCTGTTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTATTCACAAATGGTAGTGACAGTAATA
GTAGCGTTCACGGTTCCCAGGAGCGAGCAGGAAATAGATGCATGATGAAG
TGGTCCAGCACCTGCCTTGTACAAGTAATAGGACAGAGGGATCGAAATGA
TGACACAGAAGAAGAAAGAATGCAAACCGAGGTAATGACTCATTAA
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protein sequence of NO12G01880.1

>NO12G01880.1-protein ID=NO12G01880.1-protein|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MPAAEAFAGLPRSRGKRSAHQQHQLQQERSVAVGPVMAGWMSAAGYDEGF
GSKGQDEDDEAKLVERVVEQLVVQRGLGARGVMQVVRKTNPSDLALRWKG
WRRSCDCLLSLGFSAQNVTTILQRSGAFLHELDPEADIRRVVFYLWEDLG
FEKWGKIGSGLSSWQRHKFKVVTQAPDVLRRKPEGGVEDTVATLEQVGMP
TKYVLDASFRFPSLLNVPPSLIFFVSAYLSSTDVGFKPRDLGTLYRRNPW
LLHPRTVEQLRPVVAFLKEGLGVQRVHVVLRGYPQVVLRSVSEDLQPRVV
LLQSLGIPLLQIGCMVEAFPLLLSLPLEEQMLPVLYFFQAELGFSRHELW
MMLRSFPAVLDLSVEEDIRPVVRFLRDEVGLKDLKAFVKRLPPVMGYPVD
WELRKKWGLFQELGLGSLDLAEFPGWFSYSLHDRLIPRLEFCRQQGVSTE
DVVLLRVGMAGGDAAFAKEFVGVEPETYDDFMLEYKTRTKQERMARTRAK
RRASGGGGVGGDGRKTRELEEDEEFFPPEAVSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSVVVVVVVVVVVVVFTNGSDSNSSVHGSQERAGNRCMMK
WSSTCLVQVIGQRDRNDDTEEERMQTEVMTH*
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mRNA from alignment at chr12:540638..542620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01880.1 ID=NO12G01880.1|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at chr12:540638..542620- (Nannochloropsis oceanica)
ATGCCAGCTGCCGAAGCCTTTGCAGGCCTACCACGCTCAAGAGGCAAACG
CTCCGCCCACCAACAGCACCAGCTGCAGCAAGAACGAAGCGTGGCCGTCG
GCCCGGTCATGGCTGGCTGGATGTCCGCCGCCGGCTATGATGAAGGCTTT
GGTAGTAAGGGCCAAGATGAAGATGATGAGGCGAAGCTGGTGGAACGGGT
GGTGGAGCAGTTGGTGGTTCAACGTGGGTTAGGGGCAAGGGGGGTGATGC
AGGTGGTTCGTAAAACCAACCCGTCAGACTTAGCTCTGCGATGGAAGGGA
TGGAGACGAAGCTGCGACTGTTTGTTGTCTCTGGGCTTTTCGGCACAGAA
TGTCACGACAATTTTACAGAGAAGTGGTGCTTTTTTGCATGAGCTTGACC
CGGAAGCTGATATTCGACGGGTTGTGTTTTACCTCTGGGAGGACCTGGGT
TTTGAGAAGTGGGGCAAGATAGGCTCAGGCCTCTCATCATGGCAACGGCA
TAAATTTAAGGTGGTGACGCAGGCGCCGGATGTGTTGAGGAGGAAGCCGG
AGGGGGGGGTGGAGGACACGGTGGCAACTTTGGAGCAGGTGGGGATGCCT
ACGAAGTACGTGCTTGACGCTTCGTTTCGGTTCCCCTCTCTCTTGAACGT
CCCGCCAAGTCTGATTTTCTTCGTGTCGGCCTACCTCTCCTCTACGGATG
TGGGGTTTAAGCCACGGGATTTGGGAACGCTGTACAGGCGGAACCCGTGG
TTGTTGCACCCACGAACAGTAGAGCAGTTGAGGCCGGTGGTGGCTTTTTT
GAAGGAGGGGTTGGGGGTGCAGCGCGTGCACGTGGTCTTGCGTGGGTACC
CACAGGTGGTGCTGAGGAGCGTGAGCGAGGATTTACAGCCACGGGTGGTG
TTGTTGCAGAGCTTAGGAATCCCACTGCTGCAGATCGGATGCATGGTGGA
GGCCTTCCCACTCTTGTTATCCCTGCCGTTGGAGGAACAGATGTTGCCAG
TGCTGTATTTTTTTCAGGCCGAGTTGGGGTTCTCGAGGCATGAGCTTTGG
ATGATGTTGCGGTCGTTTCCCGCCGTGTTGGACTTGTCGGTAGAGGAGGA
TATCCGGCCGGTGGTTCGCTTTTTGAGGGATGAAGTGGGCTTGAAAGACT
TGAAGGCCTTTGTGAAGAGATTACCACCTGTGATGGGGTACCCGGTTGAT
TGGGAGCTACGGAAGAAGTGGGGCTTGTTTCAGGAGCTGGGGTTGGGGAG
TTTGGACTTGGCGGAGTTTCCTGGGTGGTTCTCGTATTCTTTGCACGATC
GATTGATACCTCGATTGGAGTTTTGTAGACAGCAGGGGGTGTCCACAGAG
GATGTAGTATTGTTGAGGGTGGGTATGGCGGGAGGGGATGCAGCGTTTGC
CAAGGAGTTTGTTGGCGTAGAGCCGGAAACATACGATGATTTCATGCTGG
AGTATAAAACGAGGACGAAACAAGAAAGGATGGCACGGACGAGGGCAAAG
CGGAGAGCATCGGGAGGAGGAGGAGTTGGAGGGGATGGGAGGAAAACAAG
GGAGCTGGAGGAAGACGAAGAGTTTTTCCCCCCCGAGGCTGTGTGCGATT
GAGGCTTGAGGCGGAGCGATTGAGGCGTGAGGCGGAAGGATGGAGTTGAA
AGCAGAAGTCTGAGGGGTGGATGTGTTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTATTCACAAATGGTAGTGACAGTAATAGTAGCGTTCACGG
TTCCCAGGAGCGAGCAGGAAATAGATGCATGATGAAGTGGTCCAGCACCT
GCCTTGTACAAGTAATAGGACAGAGGGATCGAAATGATGACACAGAAGAA
GAAAGAATGCAAACCGAGGTAATGACTCATTAA
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Coding sequence (CDS) from alignment at chr12:540638..542620-

>NO12G01880.1 ID=NO12G01880.1|Name=NO12G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at chr12:540638..542620- (Nannochloropsis oceanica)
ATGCCAGCTGCCGAAGCCTTTGCAGGCCTACCACGCTCAAGAGGCAAACG
CTCCGCCCACCAACAGCACCAGCTGCAGCAAGAACGAAGCGTGGCCGTCG
GCCCGGTCATGGCTGGCTGGATGTCCGCCGCCGGCTATGATGAAGGCTTT
GGTAGTAAGGGCCAAGATGAAGATGATGAGGCGAAGCTGGTGGAACGGGT
GGTGGAGCAGTTGGTGGTTCAACGTGGGTTAGGGGCAAGGGGGGTGATGC
AGGTGGTTCGTAAAACCAACCCGTCAGACTTAGCTCTGCGATGGAAGGGA
TGGAGACGAAGCTGCGACTGTTTGTTGTCTCTGGGCTTTTCGGCACAGAA
TGTCACGACAATTTTACAGAGAAGTGGTGCTTTTTTGCATGAGCTTGACC
CGGAAGCTGATATTCGACGGGTTGTGTTTTACCTCTGGGAGGACCTGGGT
TTTGAGAAGTGGGGCAAGATAGGCTCAGGCCTCTCATCATGGCAACGGCA
TAAATTTAAGGTGGTGACGCAGGCGCCGGATGTGTTGAGGAGGAAGCCGG
AGGGGGGGGTGGAGGACACGGTGGCAACTTTGGAGCAGGTGGGGATGCCT
ACGAAGTACGTGCTTGACGCTTCGTTTCGGTTCCCCTCTCTCTTGAACGT
CCCGCCAAGTCTGATTTTCTTCGTGTCGGCCTACCTCTCCTCTACGGATG
TGGGGTTTAAGCCACGGGATTTGGGAACGCTGTACAGGCGGAACCCGTGG
TTGTTGCACCCACGAACAGTAGAGCAGTTGAGGCCGGTGGTGGCTTTTTT
GAAGGAGGGGTTGGGGGTGCAGCGCGTGCACGTGGTCTTGCGTGGGTACC
CACAGGTGGTGCTGAGGAGCGTGAGCGAGGATTTACAGCCACGGGTGGTG
TTGTTGCAGAGCTTAGGAATCCCACTGCTGCAGATCGGATGCATGGTGGA
GGCCTTCCCACTCTTGTTATCCCTGCCGTTGGAGGAACAGATGTTGCCAG
TGCTGTATTTTTTTCAGGCCGAGTTGGGGTTCTCGAGGCATGAGCTTTGG
ATGATGTTGCGGTCGTTTCCCGCCGTGTTGGACTTGTCGGTAGAGGAGGA
TATCCGGCCGGTGGTTCGCTTTTTGAGGGATGAAGTGGGCTTGAAAGACT
TGAAGGCCTTTGTGAAGAGATTACCACCTGTGATGGGGTACCCGGTTGAT
TGGGAGCTACGGAAGAAGTGGGGCTTGTTTCAGGAGCTGGGGTTGGGGAG
TTTGGACTTGGCGGAGTTTCCTGGGTGGTTCTCGTATTCTTTGCACGATC
GATTGATACCTCGATTGGAGTTTTGTAGACAGCAGGGGGTGTCCACAGAG
GATGTAGTATTGTTGAGGGTGGGTATGGCGGGAGGGGATGCAGCGTTTGC
CAAGGAGTTTGTTGGCGTAGAGCCGGAAACATACGATGATTTCATGCTGG
AGTATAAAACGAGGACGAAACAAGAAAGGATGGCACGGACGAGGGCAAAG
CGGAGAGCATCGGGAGGAGGAGGAGTTGGAGGGGATGGGAGGAAAACAAG
GGAGCTGGAGGAAGACGAAGAGTTTTTCCCCCCCGAGGCTGTTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTATTCACAAATGGTAGTGACAGTAATA
GTAGCGTTCACGGTTCCCAGGAGCGAGCAGGAAATAGATGCATGATGAAG
TGGTCCAGCACCTGCCTTGTACAAGTAATAGGACAGAGGGATCGAAATGA
TGACACAGAAGAAGAAAGAATGCAAACCGAGGTAATGACTCATTAA
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Synonyms
Publications