NO12G01790, NO12G01790 (gene) Nannochloropsis oceanica

Overview
NameNO12G01790
Unique NameNO12G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length357
Alignment locationchr12:526237..526593 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:526237..526593 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
The following BLAST results are available for this feature:
BLAST of NO12G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01790.1NO12G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01790.1NO12G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01790 ID=NO12G01790|Name=NO12G01790|organism=Nannochloropsis oceanica|type=gene|length=357bp
ATGAGCGCCAGTACTGACGAACACCGCGAAACGGGCTATGAGCTCCTTGG
CAAAGTGGCAGAGTATCGCGCTTTCATGCTTACTCCTTTTGCTGACCAGC
TTCCACCCATGCTTCTTGAAGGGCTCCAAAACTCTACCTTTTCTTTGGTG
CGTCTGGCGGCCCTTAAGGCCACATGCTCGGTGGTGCTAGAAATGGGCCC
AAATGGCGGACATACCCTGTTTCAACCCTTGGTTGAGCCTTTACTTCATG
TTGTGGAGGCATCAATAAAGGAGGAGAACGAGACGGCGGCGCAAGAGGCC
ATGTCAGCCCTAGCCAGAGTGACGGAAGAAGTGCCGAAAAATTTCGTGAA
TCCCTGA
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protein sequence of NO12G01790.1

>NO12G01790.1-protein ID=NO12G01790.1-protein|Name=NO12G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MSASTDEHRETGYELLGKVAEYRAFMLTPFADQLPPMLLEGLQNSTFSLV
RLAALKATCSVVLEMGPNGGHTLFQPLVEPLLHVVEASIKEENETAAQEA
MSALARVTEEVPKNFVNP*
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Synonyms
Publications