NO12G01790.1, NO12G01790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01790.1
Unique NameNO12G01790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length357
Alignment locationchr12:526237..526593 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:526237..526593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G01790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01790NO12G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01790.1NO12G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01790.1.cds1NO12G01790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01790.1 ID=NO12G01790.1|Name=NO12G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=357bp
ATGAGCGCCAGTACTGACGAACACCGCGAAACGGGCTATGAGCTCCTTGG
CAAAGTGGCAGAGTATCGCGCTTTCATGCTTACTCCTTTTGCTGACCAGC
TTCCACCCATGCTTCTTGAAGGGCTCCAAAACTCTACCTTTTCTTTGGTG
CGTCTGGCGGCCCTTAAGGCCACATGCTCGGTGGTGCTAGAAATGGGCCC
AAATGGCGGACATACCCTGTTTCAACCCTTGGTTGAGCCTTTACTTCATG
TTGTGGAGGCATCAATAAAGGAGGAGAACGAGACGGCGGCGCAAGAGGCC
ATGTCAGCCCTAGCCAGAGTGACGGAAGAAGTGCCGAAAAATTTCGTGAA
TCCCTGA
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protein sequence of NO12G01790.1

>NO12G01790.1-protein ID=NO12G01790.1-protein|Name=NO12G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MSASTDEHRETGYELLGKVAEYRAFMLTPFADQLPPMLLEGLQNSTFSLV
RLAALKATCSVVLEMGPNGGHTLFQPLVEPLLHVVEASIKEENETAAQEA
MSALARVTEEVPKNFVNP*
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mRNA from alignment at chr12:526237..526593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01790.1 ID=NO12G01790.1|Name=NO12G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=357bp|location=Sequence derived from alignment at chr12:526237..526593+ (Nannochloropsis oceanica)
ATGAGCGCCAGTACTGACGAACACCGCGAAACGGGCTATGAGCTCCTTGG
CAAAGTGGCAGAGTATCGCGCTTTCATGCTTACTCCTTTTGCTGACCAGC
TTCCACCCATGCTTCTTGAAGGGCTCCAAAACTCTACCTTTTCTTTGGTG
CGTCTGGCGGCCCTTAAGGCCACATGCTCGGTGGTGCTAGAAATGGGCCC
AAATGGCGGACATACCCTGTTTCAACCCTTGGTTGAGCCTTTACTTCATG
TTGTGGAGGCATCAATAAAGGAGGAGAACGAGACGGCGGCGCAAGAGGCC
ATGTCAGCCCTAGCCAGAGTGACGGAAGAAGTGCCGAAAAATTTCGTGAA
TCCCTGA
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Coding sequence (CDS) from alignment at chr12:526237..526593+

>NO12G01790.1 ID=NO12G01790.1|Name=NO12G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at chr12:526237..526593+ (Nannochloropsis oceanica)
ATGAGCGCCAGTACTGACGAACACCGCGAAACGGGCTATGAGCTCCTTGG
CAAAGTGGCAGAGTATCGCGCTTTCATGCTTACTCCTTTTGCTGACCAGC
TTCCACCCATGCTTCTTGAAGGGCTCCAAAACTCTACCTTTTCTTTGGTG
CGTCTGGCGGCCCTTAAGGCCACATGCTCGGTGGTGCTAGAAATGGGCCC
AAATGGCGGACATACCCTGTTTCAACCCTTGGTTGAGCCTTTACTTCATG
TTGTGGAGGCATCAATAAAGGAGGAGAACGAGACGGCGGCGCAAGAGGCC
ATGTCAGCCCTAGCCAGAGTGACGGAAGAAGTGCCGAAAAATTTCGTGAA
TCCCTGA
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Synonyms
Publications