NO12G01760, NO12G01760 (gene) Nannochloropsis oceanica

Overview
NameNO12G01760
Unique NameNO12G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length676
Alignment locationchr12:520125..520800 -

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin-like protein 5
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:520125..520800 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: EWM25874.1 (ubiquitin-like protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 2.500e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS
Sbjct:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_001697239.1 (predicted protein [Chlamydomonas reinhardtii] >KXZ51647.1 hypothetical protein GPECTOR_11g101 [Gonium pectorale] >PNW70561.1 hypothetical protein CHLRE_17g725050v5 [Chlamydomonas reinhardtii] >PNW70562.1 hypothetical protein CHLRE_17g725050v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 143.3 bits (360), Expect = 3.100e-31
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITLADYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_011401353.1 (Ubiquitin-like protein 5 [Auxenochlorella protothecoides] >KFM28339.1 Ubiquitin-like protein 5 [Auxenochlorella protothecoides])

HSP 1 Score: 143.3 bits (360), Expect = 3.100e-31
Identity = 65/73 (89.04%), Postives = 72/73 (98.63%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEK+RIQKWYTVYKDHITLADYE+ +GM+LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKLRIQKWYTVYKDHITLADYEVKDGMNLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: PNH03953.1 (Ubiquitin-like protein 5 [Tetrabaena socialis])

HSP 1 Score: 143.3 bits (360), Expect = 3.100e-31
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKK+RVKCNEDDT+GDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITLADYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: GAX72595.1 (hypothetical protein CEUSTIGMA_g51.t1 [Chlamydomonas eustigma])

HSP 1 Score: 142.9 bits (359), Expect = 4.000e-31
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKK+RVKCNEDDT+GDLKKLVAAQTGTRPEKIRIQKWYT+YKDH+TLADYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTVGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHVTLADYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_013902819.1 (Ubiquitin-like protein 5 [Monoraphidium neglectum] >KIZ03800.1 Ubiquitin-like protein 5 [Monoraphidium neglectum])

HSP 1 Score: 142.5 bits (358), Expect = 5.200e-31
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKK+R+KCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITL+DYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRIKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLSDYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: PSC69689.1 (Ubiquitin 5 [Micractinium conductrix])

HSP 1 Score: 142.5 bits (358), Expect = 5.200e-31
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKKIR+KCNEDDTIGDLKK+VAAQTGTRPEKIRIQKWYTVYKDHITLADYE+ +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKIRIKCNEDDTIGDLKKMVAAQTGTRPEKIRIQKWYTVYKDHITLADYEVHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_024369273.1 (ubiquitin-like protein 5 [Physcomitrella patens] >PNR58047.1 hypothetical protein PHYPA_005042 [Physcomitrella patens])

HSP 1 Score: 142.1 bits (357), Expect = 6.800e-31
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL+DYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLSDYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_002946472.1 (hypothetical protein VOLCADRAFT_56004 [Volvox carteri f. nagariensis] >EFJ52399.1 hypothetical protein VOLCADRAFT_56004 [Volvox carteri f. nagariensis])

HSP 1 Score: 142.1 bits (357), Expect = 6.800e-31
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRP+KIRIQKWYT+YKDHITLADYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPDKIRIQKWYTIYKDHITLADYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: GAQ89500.1 (Ubiquitin-like protein [Klebsormidium nitens])

HSP 1 Score: 142.1 bits (357), Expect = 6.800e-31
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLGDYEIHDGMGLELYYN 73
The following BLAST results are available for this feature:
BLAST of NO12G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25874.12.500e-33100.00ubiquitin-like protein 5 [Nannochloropsis gaditana... [more]
XP_001697239.13.100e-3190.41predicted protein [Chlamydomonas reinhardtii] >KXZ... [more]
XP_011401353.13.100e-3189.04Ubiquitin-like protein 5 [Auxenochlorella protothe... [more]
PNH03953.13.100e-3190.41Ubiquitin-like protein 5 [Tetrabaena socialis][more]
GAX72595.14.000e-3189.04hypothetical protein CEUSTIGMA_g51.t1 [Chlamydomon... [more]
XP_013902819.15.200e-3190.41Ubiquitin-like protein 5 [Monoraphidium neglectum]... [more]
PSC69689.15.200e-3189.04Ubiquitin 5 [Micractinium conductrix][more]
XP_024369273.16.800e-3189.04ubiquitin-like protein 5 [Physcomitrella patens] >... [more]
XP_002946472.16.800e-3189.04hypothetical protein VOLCADRAFT_56004 [Volvox cart... [more]
GAQ89500.16.800e-3190.41Ubiquitin-like protein [Klebsormidium nitens][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010100NSK010100Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01760.1NO12G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592173gene_5334Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g35gene4660Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01760.1NO12G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01760 ID=NO12G01760|Name=NO12G01760|organism=Nannochloropsis oceanica|type=gene|length=676bp
ATGATCGAGGTCATTCTCAATGACCGGCTGGGCAAGAAGATCCGGGTCAA
ATGCAACGAGGATGATACCATCGGAGACCTGAAAAAGCTGGTGGCGGCTC
AAACAGgtgggagcttggtctttgaccggtgtcgatcaagagatgctatt
cgcggagggagacgtgacgcggtcttgtgtgtataagagggctggtgcag
ttgccgagaacggaagggccggagaacggaagaagcatattttgattgtg
cccccgaactacgtctccgcgtggcatgcgcgtggcatgcatgattagat
agactccttgcgtttcatcacacgccttttgctgacctacagttaccccg
cacgcctctcaccactttttccagGCACACGACCAGAGAAGATTCGCATC
CAAAAGTGGTACACTGTCTACAAAGATCACATCACACTCGCTGATTACGA
GATTAGTGAGgtacgatgtctcgctgacggagaggtgtccgtccggttgg
ggaagagaatttaattgcaaagcaagttcacaagacaggaaataaaggtc
tggatcgactcaattgaccatcacgacatccataattttgtgttctccac
catcattacccctgctccctccccgtcctcccttttctcgacacagGGCA
TGTCACTGGAGCTGTACTACTCGTAA
back to top

protein sequence of NO12G01760.1

>NO12G01760.1-protein ID=NO12G01760.1-protein|Name=NO12G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTV
YKDHITLADYEISEGMSLELYYS*
back to top
Synonyms
Publications