NO12G01760.1, NO12G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01760.1
Unique NameNO12G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length222
Alignment locationchr12:520125..520800 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:520125..520800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01760.1 vs.
Match: EWM25874.1 (ubiquitin-like protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 2.500e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS
Sbjct:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73          
The following BLAST results are available for this feature:
BLAST of NO12G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25874.12.500e-33100.00ubiquitin-like protein 5 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01760NO12G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01760.1NO12G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01760.1.cds1NO12G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01760.1.cds2NO12G01760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01760.1.cds3NO12G01760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01760.1 ID=NO12G01760.1|Name=NO12G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=222bp
ATGATCGAGGTCATTCTCAATGACCGGCTGGGCAAGAAGATCCGGGTCAA
ATGCAACGAGGATGATACCATCGGAGACCTGAAAAAGCTGGTGGCGGCTC
AAACAGGCACACGACCAGAGAAGATTCGCATCCAAAAGTGGTACACTGTC
TACAAAGATCACATCACACTCGCTGATTACGAGATTAGTGAGGGCATGTC
ACTGGAGCTGTACTACTCGTAA
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protein sequence of NO12G01760.1

>NO12G01760.1-protein ID=NO12G01760.1-protein|Name=NO12G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTV
YKDHITLADYEISEGMSLELYYS*
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mRNA from alignment at chr12:520125..520800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01760.1 ID=NO12G01760.1|Name=NO12G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=676bp|location=Sequence derived from alignment at chr12:520125..520800- (Nannochloropsis oceanica)
ATGATCGAGGTCATTCTCAATGACCGGCTGGGCAAGAAGATCCGGGTCAA ATGCAACGAGGATGATACCATCGGAGACCTGAAAAAGCTGGTGGCGGCTC AAACAGGTGGGAGCTTGGTCTTTGACCGGTGTCGATCAAGAGATGCTATT CGCGGAGGGAGACGTGACGCGGTCTTGTGTGTATAAGAGGGCTGGTGCAG TTGCCGAGAACGGAAGGGCCGGAGAACGGAAGAAGCATATTTTGATTGTG CCCCCGAACTACGTCTCCGCGTGGCATGCGCGTGGCATGCATGATTAGAT AGACTCCTTGCGTTTCATCACACGCCTTTTGCTGACCTACAGTTACCCCG CACGCCTCTCACCACTTTTTCCAGGCACACGACCAGAGAAGATTCGCATC CAAAAGTGGTACACTGTCTACAAAGATCACATCACACTCGCTGATTACGA GATTAGTGAGGTACGATGTCTCGCTGACGGAGAGGTGTCCGTCCGGTTGG GGAAGAGAATTTAATTGCAAAGCAAGTTCACAAGACAGGAAATAAAGGTC TGGATCGACTCAATTGACCATCACGACATCCATAATTTTGTGTTCTCCAC CATCATTACCCCTGCTCCCTCCCCGTCCTCCCTTTTCTCGACACAGGGCA TGTCACTGGAGCTGTACTACTCGTAA
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Coding sequence (CDS) from alignment at chr12:520125..520800-

>NO12G01760.1 ID=NO12G01760.1|Name=NO12G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at chr12:520125..520800- (Nannochloropsis oceanica)
ATGATCGAGGTCATTCTCAATGACCGGCTGGGCAAGAAGATCCGGGTCAA
ATGCAACGAGGATGATACCATCGGAGACCTGAAAAAGCTGGTGGCGGCTC
AAACAGGCACACGACCAGAGAAGATTCGCATCCAAAAGTGGTACACTGTC
TACAAAGATCACATCACACTCGCTGATTACGAGATTAGTGAGGGCATGTC
ACTGGAGCTGTACTACTCGTAA
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Synonyms
Publications