NO12G01730, NO12G01730 (gene) Nannochloropsis oceanica

Overview
NameNO12G01730
Unique NameNO12G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2882
Alignment locationchr12:516103..518984 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:516103..518984 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO12G01730 vs. NCBI_GenBank
Match: XP_005856111.1 (hypothetical protein NGA_0333100 [Nannochloropsis gaditana CCMP526] >EKU20247.1 hypothetical protein NGA_0333100 [Nannochloropsis gaditana CCMP526] >EWM25878.1 hypothetical protein Naga_100054g33 [Nannochloropsis gaditana])

HSP 1 Score: 168.7 bits (426), Expect = 2.300e-38
Identity = 131/225 (58.22%), Postives = 150/225 (66.67%), Query Frame = 0 
Query:    1 MSSWFSRLFTSRRYSGHYNEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVNLEYMPLPKERITTIKGVFGFSSWQGVPLMEWFFVLFYSMLGVLMFLNVANAIIMGSTGLAILYLVLAPIFFLLLTMAARVFTEVVISVLMVPHVLMKNQQEIQLQINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCPDLEGGRHTAGADLTTVHLN 226
            M S FSR+   RRY  HY   +          XXXXXXXX         E    +YMPLPKER+ TIKG+FGF  WQGV ++EWFFVLFYSM+GV+MFL++  A+ MGS GLAILY+VL+PIFF+LLTMAARVFTE+VISVLMVPH+LMKNQQE+Q QI                        XXXXXXXXXXXXXXXXXXX GCPDLE G      D TTVHL+
Sbjct:    1 MGSLFSRITNPRRYREHYENEE----TSTPAGXXXXXXXXTSPVAETVEEAAPFDYMPLPKERVATIKGIFGFGQWQGVSIIEWFFVLFYSMVGVIMFLSIVQAMTMGSAGLAILYMVLSPIFFVLLTMAARVFTELVISVLMVPHLLMKNQQELQRQIG----------------------IXXXXXXXXXXXXXXXXXXXXGCPDLEAGHQ----DFTTVHLH 195
The following BLAST results are available for this feature:
BLAST of NO12G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856111.12.300e-3858.22hypothetical protein NGA_0333100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01730.1NO12G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592169gene_5332Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g33gene4658Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01730.1NO12G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01730 ID=NO12G01730|Name=NO12G01730|organism=Nannochloropsis oceanica|type=gene|length=2882bp
TGGGACGGGAAAGATGAATCAAGTTGTTGGCGGCGTGAGGATGGTGCATG
CCTATGGGTGCTGCACGTTGGACACAAGGACGGAAGCGAAAAGACGGAGA
AGCACAGCGAAAATCAGGTAGATGGCAATGGGGAGGTTGACAAGACGCAT
GCACTTTACAACACCTAATTACACCTCCCGACACAGAACGGTGAAAAGAT
TACGACGCTGACGCGAGGGATAGATCCGGGCGGCCATAACAAGCGTGCTT
CAGGAAGTAAGCATGTAACCACGAACGATGCGGTGCGGCAAGGTCCAAGA
TGGACCTGACTTGTGATCATGCGCCGGCTTCTCATGTGCCACAATGTGCC
CACCATTCCACCGGGTTCAGGCATACATTGTTTTCCTAGCTCATCATTTG
TCCCTAGGACTCACGCCTCACGCGCGCAAATCACAGAGCTACACACAGAC
AAGCACATCCTTTCTTCCCCTGTGCTTCCAATTCTTATGCTCCATATATT
ACGTATCACGGATCAACTCGTGTTTCTTGTTCTATCTATGTATAGTTACG
TCCCGGCTCCCTACTCTTTCGCCACAAACAGGAACTTATTCCACCACACT
TAACGTCCATCACCATGAGCTCGTGGTTCTCACGCCTTTTCACCTCCCGC
CGGTATAGCGGACACTATAACGAGGGGGATGAAGGGTCTTCTTCCACCCC
TCCTTCTGACCTCATCACAACCACAACGACAACTTCCAACGCTGCTGCTA
CTGTGGCAGAAGAAGGGGTGAATCTGGAGTACATGCCCTTGCCGAAAGAG
CGGATCACGACCATAAAAGGCGTCTTCGGATTCAGCAGCTGGCAAGGTGT
TCCACTAATGGAGTGGTTTTTCGTCCTGTTTTACAGCATGCTGGGGGTGT
TGATGTTTTTAAACGTGGCCAATGCAATCATAATGGGCTCCACGGGGCTG
GCTATCTTATATTTGGTGTTGGCGCCGATCTTCTTTTTGTTACTCACGAT
GGCAGCGCGAGTGTTTACGGAGGTAGTCATTTCAGTTCTCATGgtacgtc
tgtgtcagagacgggagcgggagatggagattcatatttgtggtgttgaa
ttactcccgtctcgtccgtcgtttctgtcgcgtacactgaattccgggtc
ttacctttcccactccctccctctttctctccctccttccctcttgtcct
ttccagGTCCCTCACGTCCTCATGAAAAATCAACAAGAAATTCAGCTTCA
AATTAATTCCCTGCAGCATCAGCAGCAGCAGCAACAGCAGCAGCAGCAAC
AACAACAGCAACAGCAGCAACAGCAGGAGGAGCAGCAGCAACGACCGTCC
TTCTCATCTTCCAGCCAGGAACAGTATCAGCATGCAGGCTGTCCTGACTT
AGAGGGAGGACGACACACTGCTGGTGCTGACTTGACCACAGTCCATCTCA
ATTCAGGAGGAGGTGGTGGAACCGGGGCAGGAGGGGGTTTGAGGTCCCGT
CGTCAAGACGATGAGGTAGGAATTGCTCTGGCGTAAAGATGGGCAGTGCG
AAAGAGTTCGGAAAAGGACAGGTTCGTGAGTGGTCTTGGGTTGAGCGTGA
GAGGACAGTGGGAGAAAGGAGGGAGGGAAGGAATGGGTGTGTCTTCTGTT
GTAGGATGTGAGTGAGATTGTGCATAAGAAATACAGAATAGCGTCATGAA
AAGAGGAGCTGGAGTGGAGACAAGAGGGCCGGTGTGTTTGTCATTGAATA
AGGAGGGTGGCATGGAGTACGCGCGATATGGCCCGAGAGAGCGAAGCCAA
GGACGATGAGAGTACTAACAAACAACAAAAGAAAGACGAGAGACGATTTG
CCACGCAAACACAAGGTGACTTCTTTTTTATACTTTTAATACAGACCACT
TTATACCCCCTTTTCTCATTATGTTATCTGAGGACAACCCACACACATCC
GAATCAAGTCCCTCGTCATTATCCCCACCAAATCGTGTCTGTCGTCCGCG
ACGCTCAACCACCTCCCCTCCCCCCCATCATATGCATACTTATTACAACC
GGAAACCGGTGACATATACACCAGCTGGTTTTGTGCCCAGTCTCTCTGCA
AGGTAAATGCCCCTTTACCCGGTCCCAAGTCCAACACCAACTCTGCCTCA
TCTTGTCTGTTAATAATGAAGGGGTCATTGAGTTCCTGCATCCCCGCCAC
ACCCGCTTCCACACGATCAAATAACGCGCCCGTTACCTTGCCAAAGTCAA
TTTCGGCTGCTTGGCTCGGGGCGGCCACGCCGGGCTTGCGGCGGACAAAG
CGAGGGGCACCGCCACTGCCGCTGCTGCTGCTTCTAGTGCTGCGGCCTGA
CGCGTTTGTGGAGCTGTTTGTGCCGCTGCTGCTTATTCCACCCTTAGGCA
GGATGTCCCCCCACACGTGCTGCTGCGAGCCTTGAGACGAGGAGGAGGAG
GAGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGAGGCCGGCGTCGACAAGT
GCGAAAGACGAGAATGCTGGTGGCACGACGGCTATTGCCGCCGCTGGTTG
CCAGCTTGACAGCCGTATAAATCCACGTATGATACGGCATTTCGATGGTG
ATAAATGTGCCTGTGTTATTCGCAGGAGTTCGGATGCGTGATGCGTAACA
CTGTACATGTGAGACGAAGATTAGGCAACGAAGATCAGCATGACGACCGT
TGATGTGATGGATGGTGTACCTCAGGGTAAGCCTTGTGCCACTATGAATA
CAGTGTATGCACGACTAGCACACGAGGGACGTGCTATGCGACGACCAAAT
TATGTCCTCACCTACGCGGGGAAAGACTTTCTCATTATCTTGCTGGCAAG
CAGCACACATAGAACGACAATGCCCCTTCTTC
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protein sequence of NO12G01730.1

>NO12G01730.1-protein ID=NO12G01730.1-protein|Name=NO12G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSSWFSRLFTSRRYSGHYNEGDEGSSSTPPSDLITTTTTTSNAAATVAEE
GVNLEYMPLPKERITTIKGVFGFSSWQGVPLMEWFFVLFYSMLGVLMFLN
VANAIIMGSTGLAILYLVLAPIFFLLLTMAARVFTEVVISVLMVPHVLMK
NQQEIQLQINSLQHQQQQQQQQQQQQQQQQQQQEEQQQRPSFSSSSQEQY
QHAGCPDLEGGRHTAGADLTTVHLNSGGGGGTGAGGGLRSRRQDDEVGIA
LA*
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Synonyms
Publications