|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr12 | genome | chr12:516103..518984 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01730.1 vs.
Match: XP_005856111.1 (hypothetical protein NGA_0333100 [Nannochloropsis gaditana CCMP526]; EKU20247.1 hypothetical protein NGA_0333100 [Nannochloropsis gaditana CCMP526]; EWM25878.1 hypothetical protein Naga_100054g33 [Nannochloropsis gaditana]) HSP 1 Score: 199.5 bits (506), Expect = 1.200e-47 Identity = 139/265 (52.45%), Postives = 168/265 (63.40%), Query Frame = 0
Query: 1 MSSWFSRLFTSRRYSGHYNEGDEGSSSTPPSDLITTTTTTSNAAATVAEEGVNLEYMPLPKERITTIKGVFGFSSWQGVPLMEWFFVLFYSMLGVLMFLNVANAIIMGSTGLAILYLVLAPIFFLLLTMAARVFTEVVISVLMVPHVLMKNQQEIQLQINSLQHQQQQQQQQQQQQQQQQQQQEEQQQRPSFSSSSQEQYQHAGCPDLEGGRHTAGADLTTVHLNS--GGGGGTG------AGGGLRSRR-----QDDEVGIALA 253
M S FSR+ RRY HY E +E +STP + TS A TV EE +YMPLPKER+ TIKG+FGF WQGV ++EWFFVLFYSM+GV+MFL++ A+ MGS GLAILY+VL+PIFF+LLTMAARVFTE+VISVLMVPH+LMKNQQE+Q QI LQ QQQ SS+ Q+Q Q AGCPDLE G D TTVHL+S G GG G + + SRR + +E+GIA+A
Sbjct: 1 MGSLFSRITNPRRYREHY-ENEE--TSTPAGGSNSAAAATSPVAETV-EEAAPFDYMPLPKERVATIKGIFGFGQWQGVSIIEWFFVLFYSMVGVIMFLSIVQAMTMGSAGLAILYMVLSPIFFVLLTMAARVFTELVISVLMVPHLLMKNQQELQRQIGILQQQQQSY----------------------LSSTQQQQQQQAGCPDLEAGHQ----DFTTVHLHSATGEGGREGPSSSNPSSSAVPSRRHVGENRGEEIGIAMA 235
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01730.1 ID=NO12G01730.1|Name=NO12G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2719bp
TGGGACGGGAAAGATGAATCAAGTTGTTGGCGGCGTGAGGATGGTGCATG
CCTATGGGTGCTGCACGTTGGACACAAGGACGGAAGCGAAAAGACGGAGA
AGCACAGCGAAAATCAGGTAGATGGCAATGGGGAGGTTGACAAGACGCAT
GCACTTTACAACACCTAATTACACCTCCCGACACAGAACGGTGAAAAGAT
TACGACGCTGACGCGAGGGATAGATCCGGGCGGCCATAACAAGCGTGCTT
CAGGAAGTAAGCATGTAACCACGAACGATGCGGTGCGGCAAGGTCCAAGA
TGGACCTGACTTGTGATCATGCGCCGGCTTCTCATGTGCCACAATGTGCC
CACCATTCCACCGGGTTCAGGCATACATTGTTTTCCTAGCTCATCATTTG
TCCCTAGGACTCACGCCTCACGCGCGCAAATCACAGAGCTACACACAGAC
AAGCACATCCTTTCTTCCCCTGTGCTTCCAATTCTTATGCTCCATATATT
ACGTATCACGGATCAACTCGTGTTTCTTGTTCTATCTATGTATAGTTACG
TCCCGGCTCCCTACTCTTTCGCCACAAACAGGAACTTATTCCACCACACT
TAACGTCCATCACCATGAGCTCGTGGTTCTCACGCCTTTTCACCTCCCGC
CGGTATAGCGGACACTATAACGAGGGGGATGAAGGGTCTTCTTCCACCCC
TCCTTCTGACCTCATCACAACCACAACGACAACTTCCAACGCTGCTGCTA
CTGTGGCAGAAGAAGGGGTGAATCTGGAGTACATGCCCTTGCCGAAAGAG
CGGATCACGACCATAAAAGGCGTCTTCGGATTCAGCAGCTGGCAAGGTGT
TCCACTAATGGAGTGGTTTTTCGTCCTGTTTTACAGCATGCTGGGGGTGT
TGATGTTTTTAAACGTGGCCAATGCAATCATAATGGGCTCCACGGGGCTG
GCTATCTTATATTTGGTGTTGGCGCCGATCTTCTTTTTGTTACTCACGAT
GGCAGCGCGAGTGTTTACGGAGGTAGTCATTTCAGTTCTCATGGTCCCTC
ACGTCCTCATGAAAAATCAACAAGAAATTCAGCTTCAAATTAATTCCCTG
CAGCATCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAACAGCAACA
GCAGCAACAGCAGGAGGAGCAGCAGCAACGACCGTCCTTCTCATCTTCCA
GCCAGGAACAGTATCAGCATGCAGGCTGTCCTGACTTAGAGGGAGGACGA
CACACTGCTGGTGCTGACTTGACCACAGTCCATCTCAATTCAGGAGGAGG
TGGTGGAACCGGGGCAGGAGGGGGTTTGAGGTCCCGTCGTCAAGACGATG
AGGTAGGAATTGCTCTGGCGTAAAGATGGGCAGTGCGAAAGAGTTCGGAA
AAGGACAGGTTCGTGAGTGGTCTTGGGTTGAGCGTGAGAGGACAGTGGGA
GAAAGGAGGGAGGGAAGGAATGGGTGTGTCTTCTGTTGTAGGATGTGAGT
GAGATTGTGCATAAGAAATACAGAATAGCGTCATGAAAAGAGGAGCTGGA
GTGGAGACAAGAGGGCCGGTGTGTTTGTCATTGAATAAGGAGGGTGGCAT
GGAGTACGCGCGATATGGCCCGAGAGAGCGAAGCCAAGGACGATGAGAGT
ACTAACAAACAACAAAAGAAAGACGAGAGACGATTTGCCACGCAAACACA
AGGTGACTTCTTTTTTATACTTTTAATACAGACCACTTTATACCCCCTTT
TCTCATTATGTTATCTGAGGACAACCCACACACATCCGAATCAAGTCCCT
CGTCATTATCCCCACCAAATCGTGTCTGTCGTCCGCGACGCTCAACCACC
TCCCCTCCCCCCCATCATATGCATACTTATTACAACCGGAAACCGGTGAC
ATATACACCAGCTGGTTTTGTGCCCAGTCTCTCTGCAAGGTAAATGCCCC
TTTACCCGGTCCCAAGTCCAACACCAACTCTGCCTCATCTTGTCTGTTAA
TAATGAAGGGGTCATTGAGTTCCTGCATCCCCGCCACACCCGCTTCCACA
CGATCAAATAACGCGCCCGTTACCTTGCCAAAGTCAATTTCGGCTGCTTG
GCTCGGGGCGGCCACGCCGGGCTTGCGGCGGACAAAGCGAGGGGCACCGC
CACTGCCGCTGCTGCTGCTTCTAGTGCTGCGGCCTGACGCGTTTGTGGAG
CTGTTTGTGCCGCTGCTGCTTATTCCACCCTTAGGCAGGATGTCCCCCCA
CACGTGCTGCTGCGAGCCTTGAGACGAGGAGGAGGAGGAGGAGGAGGAGG
AGGGGGAGGAGGAGGAGAGAGGCCGGCGTCGACAAGTGCGAAAGACGAGA
ATGCTGGTGGCACGACGGCTATTGCCGCCGCTGGTTGCCAGCTTGACAGC
CGTATAAATCCACGTATGATACGGCATTTCGATGGTGATAAATGTGCCTG
TGTTATTCGCAGGAGTTCGGATGCGTGATGCGTAACACTGTACATGTGAG
ACGAAGATTAGGCAACGAAGATCAGCATGACGACCGTTGATGTGATGGAT
GGTGTACCTCAGGGTAAGCCTTGTGCCACTATGAATACAGTGTATGCACG
ACTAGCACACGAGGGACGTGCTATGCGACGACCAAATTATGTCCTCACCT
ACGCGGGGAAAGACTTTCTCATTATCTTGCTGGCAAGCAGCACACATAGA
ACGACAATGCCCCTTCTTC back to topprotein sequence of NO12G01730.1 >NO12G01730.1-protein ID=NO12G01730.1-protein|Name=NO12G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSSWFSRLFTSRRYSGHYNEGDEGSSSTPPSDLITTTTTTSNAAATVAEE
GVNLEYMPLPKERITTIKGVFGFSSWQGVPLMEWFFVLFYSMLGVLMFLN
VANAIIMGSTGLAILYLVLAPIFFLLLTMAARVFTEVVISVLMVPHVLMK
NQQEIQLQINSLQHQQQQQQQQQQQQQQQQQQQEEQQQRPSFSSSSQEQY
QHAGCPDLEGGRHTAGADLTTVHLNSGGGGGTGAGGGLRSRRQDDEVGIA
LA* back to topmRNA from alignment at chr12:516103..518984- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01730.1 ID=NO12G01730.1|Name=NO12G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2882bp|location=Sequence derived from alignment at chr12:516103..518984- (Nannochloropsis oceanica)
TGGGACGGGAAAGATGAATCAAGTTGTTGGCGGCGTGAGGATGGTGCATG
CCTATGGGTGCTGCACGTTGGACACAAGGACGGAAGCGAAAAGACGGAGA
AGCACAGCGAAAATCAGGTAGATGGCAATGGGGAGGTTGACAAGACGCAT
GCACTTTACAACACCTAATTACACCTCCCGACACAGAACGGTGAAAAGAT
TACGACGCTGACGCGAGGGATAGATCCGGGCGGCCATAACAAGCGTGCTT
CAGGAAGTAAGCATGTAACCACGAACGATGCGGTGCGGCAAGGTCCAAGA
TGGACCTGACTTGTGATCATGCGCCGGCTTCTCATGTGCCACAATGTGCC
CACCATTCCACCGGGTTCAGGCATACATTGTTTTCCTAGCTCATCATTTG
TCCCTAGGACTCACGCCTCACGCGCGCAAATCACAGAGCTACACACAGAC
AAGCACATCCTTTCTTCCCCTGTGCTTCCAATTCTTATGCTCCATATATT
ACGTATCACGGATCAACTCGTGTTTCTTGTTCTATCTATGTATAGTTACG
TCCCGGCTCCCTACTCTTTCGCCACAAACAGGAACTTATTCCACCACACT
TAACGTCCATCACCATGAGCTCGTGGTTCTCACGCCTTTTCACCTCCCGC
CGGTATAGCGGACACTATAACGAGGGGGATGAAGGGTCTTCTTCCACCCC
TCCTTCTGACCTCATCACAACCACAACGACAACTTCCAACGCTGCTGCTA
CTGTGGCAGAAGAAGGGGTGAATCTGGAGTACATGCCCTTGCCGAAAGAG
CGGATCACGACCATAAAAGGCGTCTTCGGATTCAGCAGCTGGCAAGGTGT
TCCACTAATGGAGTGGTTTTTCGTCCTGTTTTACAGCATGCTGGGGGTGT
TGATGTTTTTAAACGTGGCCAATGCAATCATAATGGGCTCCACGGGGCTG
GCTATCTTATATTTGGTGTTGGCGCCGATCTTCTTTTTGTTACTCACGAT
GGCAGCGCGAGTGTTTACGGAGGTAGTCATTTCAGTTCTCATGGTACGTC
TGTGTCAGAGACGGGAGCGGGAGATGGAGATTCATATTTGTGGTGTTGAA
TTACTCCCGTCTCGTCCGTCGTTTCTGTCGCGTACACTGAATTCCGGGTC
TTACCTTTCCCACTCCCTCCCTCTTTCTCTCCCTCCTTCCCTCTTGTCCT
TTCCAGGTCCCTCACGTCCTCATGAAAAATCAACAAGAAATTCAGCTTCA
AATTAATTCCCTGCAGCATCAGCAGCAGCAGCAACAGCAGCAGCAGCAAC
AACAACAGCAACAGCAGCAACAGCAGGAGGAGCAGCAGCAACGACCGTCC
TTCTCATCTTCCAGCCAGGAACAGTATCAGCATGCAGGCTGTCCTGACTT
AGAGGGAGGACGACACACTGCTGGTGCTGACTTGACCACAGTCCATCTCA
ATTCAGGAGGAGGTGGTGGAACCGGGGCAGGAGGGGGTTTGAGGTCCCGT
CGTCAAGACGATGAGGTAGGAATTGCTCTGGCGTAAAGATGGGCAGTGCG
AAAGAGTTCGGAAAAGGACAGGTTCGTGAGTGGTCTTGGGTTGAGCGTGA
GAGGACAGTGGGAGAAAGGAGGGAGGGAAGGAATGGGTGTGTCTTCTGTT
GTAGGATGTGAGTGAGATTGTGCATAAGAAATACAGAATAGCGTCATGAA
AAGAGGAGCTGGAGTGGAGACAAGAGGGCCGGTGTGTTTGTCATTGAATA
AGGAGGGTGGCATGGAGTACGCGCGATATGGCCCGAGAGAGCGAAGCCAA
GGACGATGAGAGTACTAACAAACAACAAAAGAAAGACGAGAGACGATTTG
CCACGCAAACACAAGGTGACTTCTTTTTTATACTTTTAATACAGACCACT
TTATACCCCCTTTTCTCATTATGTTATCTGAGGACAACCCACACACATCC
GAATCAAGTCCCTCGTCATTATCCCCACCAAATCGTGTCTGTCGTCCGCG
ACGCTCAACCACCTCCCCTCCCCCCCATCATATGCATACTTATTACAACC
GGAAACCGGTGACATATACACCAGCTGGTTTTGTGCCCAGTCTCTCTGCA
AGGTAAATGCCCCTTTACCCGGTCCCAAGTCCAACACCAACTCTGCCTCA
TCTTGTCTGTTAATAATGAAGGGGTCATTGAGTTCCTGCATCCCCGCCAC
ACCCGCTTCCACACGATCAAATAACGCGCCCGTTACCTTGCCAAAGTCAA
TTTCGGCTGCTTGGCTCGGGGCGGCCACGCCGGGCTTGCGGCGGACAAAG
CGAGGGGCACCGCCACTGCCGCTGCTGCTGCTTCTAGTGCTGCGGCCTGA
CGCGTTTGTGGAGCTGTTTGTGCCGCTGCTGCTTATTCCACCCTTAGGCA
GGATGTCCCCCCACACGTGCTGCTGCGAGCCTTGAGACGAGGAGGAGGAG
GAGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGAGGCCGGCGTCGACAAGT
GCGAAAGACGAGAATGCTGGTGGCACGACGGCTATTGCCGCCGCTGGTTG
CCAGCTTGACAGCCGTATAAATCCACGTATGATACGGCATTTCGATGGTG
ATAAATGTGCCTGTGTTATTCGCAGGAGTTCGGATGCGTGATGCGTAACA
CTGTACATGTGAGACGAAGATTAGGCAACGAAGATCAGCATGACGACCGT
TGATGTGATGGATGGTGTACCTCAGGGTAAGCCTTGTGCCACTATGAATA
CAGTGTATGCACGACTAGCACACGAGGGACGTGCTATGCGACGACCAAAT
TATGTCCTCACCTACGCGGGGAAAGACTTTCTCATTATCTTGCTGGCAAG
CAGCACACATAGAACGACAATGCCCCTTCTTC back to topCoding sequence (CDS) from alignment at chr12:516103..518984- >NO12G01730.1 ID=NO12G01730.1|Name=NO12G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr12:516103..518984- (Nannochloropsis oceanica)
ATGAGCTCGTGGTTCTCACGCCTTTTCACCTCCCGCCGGTATAGCGGACA
CTATAACGAGGGGGATGAAGGGTCTTCTTCCACCCCTCCTTCTGACCTCA
TCACAACCACAACGACAACTTCCAACGCTGCTGCTACTGTGGCAGAAGAA
GGGGTGAATCTGGAGTACATGCCCTTGCCGAAAGAGCGGATCACGACCAT
AAAAGGCGTCTTCGGATTCAGCAGCTGGCAAGGTGTTCCACTAATGGAGT
GGTTTTTCGTCCTGTTTTACAGCATGCTGGGGGTGTTGATGTTTTTAAAC
GTGGCCAATGCAATCATAATGGGCTCCACGGGGCTGGCTATCTTATATTT
GGTGTTGGCGCCGATCTTCTTTTTGTTACTCACGATGGCAGCGCGAGTGT
TTACGGAGGTAGTCATTTCAGTTCTCATGGTCCCTCACGTCCTCATGAAA
AATCAACAAGAAATTCAGCTTCAAATTAATTCCCTGCAGCATCAGCAGCA
GCAGCAACAGCAGCAGCAGCAACAACAACAGCAACAGCAGCAACAGCAGG
AGGAGCAGCAGCAACGACCGTCCTTCTCATCTTCCAGCCAGGAACAGTAT
CAGCATGCAGGCTGTCCTGACTTAGAGGGAGGACGACACACTGCTGGTGC
TGACTTGACCACAGTCCATCTCAATTCAGGAGGAGGTGGTGGAACCGGGG
CAGGAGGGGGTTTGAGGTCCCGTCGTCAAGACGATGAGGTAGGAATTGCT
CTGGCGTAA back to top
|