NO12G01600, NO12G01600 (gene) Nannochloropsis oceanica

Overview
NameNO12G01600
Unique NameNO12G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr12:487699..488004 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:487699..488004 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO12G01600 vs. NCBI_GenBank
Match: EJK68451.1 (hypothetical protein THAOC_10367 [Thalassiosira oceanica])

HSP 1 Score: 120.2 bits (300), Expect = 3.800e-24
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPT--EGWYYK 99
            +YGIR+Y  G+RL+ H D I+THAVS I+N+AQ  +   W ++++DH    H +VM+PG+ V+YES   +HG  TPLK G YAN+F HYRPT    WY K
Sbjct:  335 LYGIRQYTEGARLLTHVDRITTHAVSLIVNIAQGNVTSPWTVEVYDHADRLHEVVMEPGDIVYYESAKALHGRNTPLKGGYYANIFTHYRPTGDPSWYKK 434          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: XP_009033934.1 (hypothetical protein AURANDRAFT_70898 [Aureococcus anophagefferens] >EGB11582.1 hypothetical protein AURANDRAFT_70898 [Aureococcus anophagefferens])

HSP 1 Score: 118.2 bits (295), Expect = 1.500e-23
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGW 96
            +YGIRRY  GS L  H D+++THAVSAI+NV Q+ + E+WPLQI DH G  H++VM+PGE V YES   IHG   PL   +Y N+FVH+RP  GW
Sbjct: 1744 VYGIRRYTNGSTLQAHVDVVATHAVSAILNVDQD-VDEDWPLQIRDHGGDVHAVVMKPGEMVLYESSKSIHGRLVPLNGASYDNIFVHFRPRLGW 1837          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: EJK59131.1 (hypothetical protein THAOC_20685 [Thalassiosira oceanica])

HSP 1 Score: 117.1 bits (292), Expect = 3.200e-23
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTE--GWYYK 99
            MYG+R Y  G+RL+ H D  STHA S I+N+AQE + + W +++ DH    H +VM+PGE V+YES   +HG  TPL++G Y NLF HYRPT+   WY +
Sbjct:  367 MYGMREYTKGARLLTHVDRESTHAASMIVNIAQENVTKPWTIEVLDHADRLHEVVMEPGEIVYYESAKSLHGRNTPLQSGRYINLFTHYRPTDDPDWYLR 466          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: GAX27015.1 (hypothetical protein FisN_9Lh328 [Fistulifera solaris])

HSP 1 Score: 110.5 bits (275), Expect = 3.000e-21
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPL--KNGTYANLFVHYRPTE---GWYYK 99
            MYG+R+Y  G+RL+ H D  +THAVS I+N+AQ  + E WP+++ DH    H I+M+PG+ V+YES   +HG   P+   N  Y NLF HYRP E    WY K
Sbjct:  324 MYGLRKYTEGARLLTHVDRRNTHAVSLIVNIAQGNLTEPWPVEVQDHMDRMHEILMEPGDIVYYESAKALHGRNRPMTGPNSYYVNLFTHYRPVEDADDWYKK 426          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: GAX24077.1 (hypothetical protein FisN_9Hh328 [Fistulifera solaris])

HSP 1 Score: 110.5 bits (275), Expect = 3.000e-21
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPL--KNGTYANLFVHYRPTE---GWYYK 99
            MYG+R+Y  G+RL+ H D  +THAVS I+N+AQ  + E WP+++ DH    H I+M+PG+ V+YES   +HG   P+   N  Y NLF HYRP E    WY K
Sbjct:  311 MYGLRKYTEGARLLTHVDRRNTHAVSLIVNIAQGNLTEPWPVEVQDHMDRMHEILMEPGDIVYYESAKALHGRNRPMTGPNSYYVNLFTHYRPVEDADDWYKK 413          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: XP_009034843.1 (hypothetical protein AURANDRAFT_62497 [Aureococcus anophagefferens] >EGB09997.1 hypothetical protein AURANDRAFT_62497 [Aureococcus anophagefferens])

HSP 1 Score: 105.9 bits (263), Expect = 7.400e-20
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    2 YGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGW 96
            YG+R Y  G+ L  H D  +TH VS I+NVAQ G+ E WPL+I DH G  H++ M+PG+ + YES   +HG   P +  +YAN+FVHY P   W
Sbjct:  405 YGVRTYERGAYLHLHVDTANTHVVSGIMNVAQAGVDEPWPLEILDHAGKLHAVNMEPGDFLLYESARLLHGRPRPFRGDSYANIFVHYMPEHDW 498          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: XP_023343650.1 (uncharacterized protein LOC111713088 [Eurytemora affinis])

HSP 1 Score: 103.6 bits (257), Expect = 3.700e-19
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTE-GWY 97
            +YG+R+Y  G+ L  H D + TH VSAI+N+AQ+ + E+WPLQI DHQG ++ I++ PG+ V+YES   IH    P K  +Y N+FVHY P    WY
Sbjct:   86 VYGLRKYTRGAWLHAHLDHLRTHVVSAILNIAQD-VDEDWPLQIEDHQGNKYEIILAPGDMVWYESAKLIHARIKPFKGRSYENIFVHYMPRSLNWY 181          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: PCI87991.1 (proline hydroxylase [Rhizobiales bacterium])

HSP 1 Score: 102.8 bits (255), Expect = 6.300e-19
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP 92
            +YGIR Y  G++L  H D + TH +S IIN+ Q+ + E+WPLQI DH    H IVMQPG+ VFYE     HG E PLK   +AN+F H++P
Sbjct:  376 VYGIRTYNEGAKLRAHRDRLDTHIISCIINIYQD-VDEDWPLQIDDHHYRTHDIVMQPGDMVFYEGARLQHGREIPLKGRAFANIFCHFKP 465          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: PCH47595.1 (proline hydroxylase [Alphaproteobacteria bacterium])

HSP 1 Score: 102.4 bits (254), Expect = 8.200e-19
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP 92
            +YGIR Y  G++L  H D + TH VS IIN+ Q+ + E+WPLQI DH    H IV+QPG+ VFYE     HG E PLK   +AN+F H++P
Sbjct:  376 VYGIRTYNEGAKLRAHRDRLDTHIVSCIINIYQD-VDEDWPLQIDDHHYRTHDIVLQPGDMVFYEGARLQHGREVPLKGRAFANIFCHFKP 465          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: ETO11666.1 (hypothetical protein RFI_25710 [Reticulomyxa filosa])

HSP 1 Score: 101.7 bits (252), Expect = 1.400e-18
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINV---AQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGWYYKY 100
            +YGIR Y  G+ L  H D   TH +SAIINV     +G  ++WPLQI+DH+G  H   M+PG+ +FYES  C H    PL    YAN+F+H++PT+  Y+ Y
Sbjct:  110 LYGIRMYTRGAILGMHVDTCGTHVISAIINVDSKLDQG--KDWPLQIYDHEGTLHEFTMKPGDVMFYESAKCGHSRFKPLPGEYYANIFIHFKPTDPIYWNY 209          
The following BLAST results are available for this feature:
BLAST of NO12G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EJK68451.13.800e-2451.00hypothetical protein THAOC_10367 [Thalassiosira oc... [more]
XP_009033934.11.500e-2356.84hypothetical protein AURANDRAFT_70898 [Aureococcus... [more]
EJK59131.13.200e-2350.00hypothetical protein THAOC_20685 [Thalassiosira oc... [more]
GAX27015.13.000e-2147.57hypothetical protein FisN_9Lh328 [Fistulifera sola... [more]
GAX24077.13.000e-2147.57hypothetical protein FisN_9Hh328 [Fistulifera sola... [more]
XP_009034843.17.400e-2047.87hypothetical protein AURANDRAFT_62497 [Aureococcus... [more]
XP_023343650.13.700e-1948.45uncharacterized protein LOC111713088 [Eurytemora a... [more]
PCI87991.16.300e-1950.55proline hydroxylase [Rhizobiales bacterium][more]
PCH47595.18.200e-1950.55proline hydroxylase [Alphaproteobacteria bacterium... [more]
ETO11666.11.400e-1846.08hypothetical protein RFI_25710 [Reticulomyxa filos... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01600.1NO12G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01600.1NO12G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01600 ID=NO12G01600|Name=NO12G01600|organism=Nannochloropsis oceanica|type=gene|length=306bp
ATGTACGGCATCCGTCGCTACCCTGCCGGAAGCCGGCTAATGAAACACGG
TGACATGATCTCGACACACGCCGTCAGCGCCATTATAAATGTGGCTCAAG
AAGGGATACTTGAGGAATGGCCATTGCAAATCCACGACCATCAGGGAGTA
GAGCATTCGATTGTAATGCAGCCCGGAGAGGCGGTTTTCTACGAAAGCGT
GTCTTGCATTCATGGCCACGAGACGCCGTTGAAGAATGGGACGTACGCGA
ATTTGTTTGTGCATTACCGTCCAACGGAGGGGTGGTACTACAAGTACAAG
TACTGA
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protein sequence of NO12G01600.1

>NO12G01600.1-protein ID=NO12G01600.1-protein|Name=NO12G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGV
EHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGWYYKYK
Y*
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Synonyms
Publications