NO12G01600.1, NO12G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01600.1
Unique NameNO12G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr12:487699..488004 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:487699..488004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01600.1 vs.
Match: EJK68451.1 (hypothetical protein THAOC_10367 [Thalassiosira oceanica])

HSP 1 Score: 120.2 bits (300), Expect = 3.800e-24
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPT--EGWYYK 99
            +YGIR+Y  G+RL+ H D I+THAVS I+N+AQ  +   W ++++DH    H +VM+PG+ V+YES   +HG  TPLK G YAN+F HYRPT    WY K
Sbjct:  335 LYGIRQYTEGARLLTHVDRITTHAVSLIVNIAQGNVTSPWTVEVYDHADRLHEVVMEPGDIVYYESAKALHGRNTPLKGGYYANIFTHYRPTGDPSWYKK 434
The following BLAST results are available for this feature:
BLAST of NO12G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EJK68451.13.800e-2451.00hypothetical protein THAOC_10367 [Thalassiosira oc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01600NO12G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01600.1NO12G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01600.1.cds1NO12G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01600.1 ID=NO12G01600.1|Name=NO12G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=306bp
ATGTACGGCATCCGTCGCTACCCTGCCGGAAGCCGGCTAATGAAACACGG
TGACATGATCTCGACACACGCCGTCAGCGCCATTATAAATGTGGCTCAAG
AAGGGATACTTGAGGAATGGCCATTGCAAATCCACGACCATCAGGGAGTA
GAGCATTCGATTGTAATGCAGCCCGGAGAGGCGGTTTTCTACGAAAGCGT
GTCTTGCATTCATGGCCACGAGACGCCGTTGAAGAATGGGACGTACGCGA
ATTTGTTTGTGCATTACCGTCCAACGGAGGGGTGGTACTACAAGTACAAG
TACTGA
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protein sequence of NO12G01600.1

>NO12G01600.1-protein ID=NO12G01600.1-protein|Name=NO12G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGV
EHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGWYYKYK
Y*
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mRNA from alignment at chr12:487699..488004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01600.1 ID=NO12G01600.1|Name=NO12G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=306bp|location=Sequence derived from alignment at chr12:487699..488004- (Nannochloropsis oceanica)
ATGTACGGCATCCGTCGCTACCCTGCCGGAAGCCGGCTAATGAAACACGG
TGACATGATCTCGACACACGCCGTCAGCGCCATTATAAATGTGGCTCAAG
AAGGGATACTTGAGGAATGGCCATTGCAAATCCACGACCATCAGGGAGTA
GAGCATTCGATTGTAATGCAGCCCGGAGAGGCGGTTTTCTACGAAAGCGT
GTCTTGCATTCATGGCCACGAGACGCCGTTGAAGAATGGGACGTACGCGA
ATTTGTTTGTGCATTACCGTCCAACGGAGGGGTGGTACTACAAGTACAAG
TACTGA
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Coding sequence (CDS) from alignment at chr12:487699..488004-

>NO12G01600.1 ID=NO12G01600.1|Name=NO12G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr12:487699..488004- (Nannochloropsis oceanica)
ATGTACGGCATCCGTCGCTACCCTGCCGGAAGCCGGCTAATGAAACACGG
TGACATGATCTCGACACACGCCGTCAGCGCCATTATAAATGTGGCTCAAG
AAGGGATACTTGAGGAATGGCCATTGCAAATCCACGACCATCAGGGAGTA
GAGCATTCGATTGTAATGCAGCCCGGAGAGGCGGTTTTCTACGAAAGCGT
GTCTTGCATTCATGGCCACGAGACGCCGTTGAAGAATGGGACGTACGCGA
ATTTGTTTGTGCATTACCGTCCAACGGAGGGGTGGTACTACAAGTACAAG
TACTGA
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Synonyms
Publications