NO12G01320, NO12G01320 (gene) Nannochloropsis oceanica

Overview
NameNO12G01320
Unique NameNO12G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1531
Alignment locationchr12:415525..417055 -

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Properties
Property NameValue
DescriptionWd40 repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:415525..417055 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO12G01320 vs. NCBI_GenBank
Match: XP_005855470.1 (wd40 repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >XP_005856236.1 wd40 repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU20123.1 wd40 repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU20890.1 wd40 repeat-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 349.7 bits (896), Expect = 1.100e-92
Identity = 189/337 (56.08%), Postives = 227/337 (67.36%), Query Frame = 0
Query:   68 RPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSRXXXXXXXXXXW--------------------------------------EGSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGSWVTGGEDARLCLWGCKVEAGEGVAATRGTEKMTKKKKGKEIA-HYKPY 366
            R TL+P SSS+ +GH+GP+T LCPSPDHPSL  SSSEDKTVRLWD+R   ++ C +VI Q DEALSC  G G+ LLAVGVG  +DFFD+R    XXXXXX                                         SEDGL+CLYDTGV QADEAL CILNAE PVRD+TFFG +GDGLALLTGSEGT VWHWPSA RAL ++DLRQ+  S   ++        LFS++YHYDQG DRL LALSDVEG +TV++V PGG MHP+++L+ GH  LVRAVD  +G+WVTGGEDARLCLW  K + G+     + T    K+KKGK+ A H++PY
Sbjct:    1 RYTLEPKSSSALEGHLGPLTGLCPSPDHPSLLASSSEDKTVRLWDLR--VQSGCVSVIQQVDEALSCAFGKGSGLLAVGVGCHVDFFDARQTKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVFHPSQTTTLASASEDGLVCLYDTGVSQADEALACILNAESPVRDMTFFGAKGDGLALLTGSEGTSVWHWPSALRALDVEDLRQSAGSFNREK-------ALFSIQYHYDQGTDRLRLALSDVEGSVTVVEVQPGGEMHPLLRLESGHKCLVRAVDSHNGTWVTGGEDARLCLWNEKEQEGQ---VNQSTAFDRKQKKGKKFAPHFQPY 325          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: OQS04043.1 (hypothetical protein THRCLA_03687 [Thraustotheca clavata])

HSP 1 Score: 152.1 bits (383), Expect = 3.300e-33
Identity = 106/344 (30.81%), Postives = 152/344 (44.19%), Query Frame = 0
Query:   10 PRMLRPSKTQITTLQ--APVSMGTEDFNGDDNEYILHCVHACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSRXXXXXXXXXXWE-------------------GSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGSW-VTGGEDARLCLW 332
            P+ L  + T +T  +  A ++M TED    D EY+L C           ALS+  I+   R TL  T       H   I  +C S   P   VS S D T++LWD+R  N N     I    E  SC++G G  L+  G  +   F+D+R                                SEDG++CL+D  +   DEA++ I+N E  V    FFG E    A LTGSE   +W+  +A R      +R A  ++ +           + +   YD   + L L   D  G + +LQ+  G  + P  +L  GH A +R +D WDG+  +TGGED+RLC W
Sbjct:    6 PQALALNGTIVTHFKQDASLTMTTED---QDYEYVLDCKTNASKDHAILALSDKTIQARSRSTL--TCERVIAAHTNSINEICVSETEPWCVVSGSSDGTIKLWDLR-VNANTAAQTIPVRTEVWSCSIGCGDTLVVCGTEDRAVFYDTRTTRKLGEYGESHMDNVTRVRFHPLRRSEVVTASEDGIVCLFDCTIADEDEAIISIINVESAVTQFAFFGPELHNFACLTGSETLDLWNITTAQRIAHFPQIRDACNALNMPTE--------YLIDCKYDPTTNALHLITGDHAGTVNILQL--GESLTPEAKLTGGHKAAIRCID-WDGNMLLTGGEDSRLCKW 332          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: OQR92392.1 (hypothetical protein ACHHYP_03749 [Achlya hypogyna])

HSP 1 Score: 146.0 bits (367), Expect = 2.300e-31
Identity = 107/348 (30.75%), Postives = 152/348 (43.68%), Query Frame = 0
Query:    6 AAFAPRMLRPSKTQIT--TLQAPVSMGTEDFNGDDNEYILHCVHACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSRXXXXXXXXXXWE-------------------GSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGS-WVTGGEDARLCLW 332
            A   P+ L    T +T     A + M TED    D EY+L C        V  ALS+  ++  +R TL  T       H   I  +C S   P   VS S D T++LWD+R   + A T  I    E  S ++G G  L+  G  +   F+D+R                                SEDG++CL+D  +   DEA++ I+N E  V    FFG E   +A LTGSE   +W+  +A R     ++RQA  ++ +           F +   YD   + L L   D  G + +  +  G  + P  +L  GH   VR VD WDG+  +TGGED+RLC W
Sbjct:    2 ALATPQTLGLQSTVVTHFAQHATLQMTTED---QDYEYVLDCKTTATKDHVVLALSDKTLQARNRSTL--TCDRVINAHTNSINEICVSETEPWCVVSGSSDGTIKLWDLRTNGQAAQT--IGVRTEVWSVSMGCGDTLVVCGTEDRAVFYDTRSAGKLGEYGESHMDNVTRVRFHPLRRSEVVTASEDGVVCLFDCTIADEDEAIISIVNVESAVTQFAFFGHELHNMAFLTGSETLDLWNITTAQRIAHFPEIRQACNALHMPTE--------FLIDCKYDTTTNVLHLITGDHSGTVNIAAL--GDNLVPEAKLMGGHKTAVRCVD-WDGTCLLTGGEDSRLCKW 331          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: XP_008606657.1 (hypothetical protein SDRG_02831 [Saprolegnia diclina VS20] >EQC40183.1 hypothetical protein SDRG_02831 [Saprolegnia diclina VS20])

HSP 1 Score: 140.2 bits (352), Expect = 1.300e-29
Identity = 103/361 (28.53%), Postives = 154/361 (42.66%), Query Frame = 0
Query:   10 PRMLRPSKTQITTLQ--APVSMGTEDFNGDDNEYILHCVHACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIR---GPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSRXXXXXXXXXXWE-------------------GSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGSWVTGGEDARLCLWGCKVEAGEGVAATRG 347
            P+ L  S T +T  +  A + M  ED    D EY++ C        V  ALS+  ++   R TL  T       H   I  +C S   P   +S S D T++LWD+R   GP ++     I    E  +C++G G  L+  G  +   F+D+R                                SEDG++CL+D  +   D+A++ I+N E  V    FFG E   +A LTGSE   +W+  +A R      +R A  ++ +           + +   YD   D+L L   D  G + +   +    + P  +L  GH   VR +D  D   +TGGED+RLC W     +G    ATRG
Sbjct:    6 PQTLALSSTVVTHFKQDATLQMTRED---QDYEYVMDCKTTASKDHVILALSDKTLQARSRSTL--TCDRVIAAHNASINEVCVSETSPWCVLSGSNDGTMKLWDLRTDQGPAQS-----IRVGSEVWTCSMGCGDTLVVCGTNDRAVFYDTRTARKLGEYGESHMDNVTRVRFHPLRRSEVVTASEDGVVCLFDCTIADEDDAIISIINVESAVTQFAFFGHELHNMAFLTGSETLDLWNITTAQRLAHFPQIRDACNALHMPTE--------YLIDCKYDATSDQLHLVTGDHAGTVNI-ATLGESSLTPQAKLVGGHKTAVRCIDWDDNMLLTGGEDSRLCKW--SASSGLQQQATRG 345          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: XP_009833216.1 (hypothetical protein H257_08846 [Aphanomyces astaci] >ETV77429.1 hypothetical protein H257_08846 [Aphanomyces astaci])

HSP 1 Score: 138.3 bits (347), Expect = 4.900e-29
Identity = 93/313 (29.71%), Postives = 134/313 (42.81%), Query Frame = 0
Query:   38 DNEYILHCVHACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSRXXXXXXXXXXWE-------------------GSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGSWVTGGEDARLCLW 332
            D EY+L C        V  ALS+  I+   R TL  +       H   I  L  S   P   +S S D T+++WD+R  ++ A    I   +E  SC++G G  L+  G  ++  FFD R                                S+DG++CL+D  +   DEA +  +N E  V     FG +   +A+LTGSE   VW+  +A R      +R    S         G    + V   Y+   D+L LA  + +GQL V Q+ P  G+     L  GH A +R +D      +TGGEDAR+C W
Sbjct:   34 DYEYVLDCKTTASKDHVLLALSDRTIQARSRATL--SCERQFTAHTDTINELVISETQPWNVISGSNDGTIKVWDLR-QSQPAAVQTIRVGEEVWSCSVGCGDTLVVAGAADSAVFFDLRTLRKLGQYGESHMDNVTRVQFHPVRRSEVITASDDGIVCLFDCTIADEDEATISTINVESSVSRFCMFGPDLHNIAVLTGSETLDVWNLTTAERLAHFPTIRDQCSS------SSAGLHTDYLVDCKYNAASDQLHLATGNHQGQLNVFQLNPQAGIVHQATLSGGHKAAIRCLDWQADMLLTGGEDARVCQW 337          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: XP_008874846.1 (hypothetical protein H310_10284 [Aphanomyces invadans] >ETV96583.1 hypothetical protein H310_10284 [Aphanomyces invadans])

HSP 1 Score: 137.1 bits (344), Expect = 1.100e-28
Identity = 89/313 (28.43%), Postives = 132/313 (42.17%), Query Frame = 0
Query:   38 DNEYILHCVHACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSRXXXXXXXXXXWE-------------------GSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGSWVTGGEDARLCLW 332
            D EY+L C           ALS+  I+   R TL  +     + H   I  L  S   P   +S S D T+++WD+R    +A    I   +E  SC++G G  L+     ++  F+D R                                S+DG++CL+D  +   D+A +  +N E  V     FG +   +A LTGSE   VW+  +A R      +R    +  +           F V   YD   D+L LA  + +GQL + Q+ P  G+     L  GH A +R +D  D   +TGGEDAR+C W
Sbjct:   34 DYEYVLDCKTTMSKEHALLALSDRTIQARSRATL--SCERQFEAHSDTINELVVSETQPWSVISGSNDGTIKVWDLRQAQPSA-VQTIRVGEEVWSCSVGCGDTLVVAAAADSAVFYDLRTLRKLGQYGESHMDNVTRVQFHPLRRSEVITASDDGIVCLFDCTIANEDDATISTINVESSVSRFCMFGPDSHNIACLTGSETLDVWNLTTAERLAHFSTIRDQCSAAPMLHTD-------FLVDCKYDPTTDQLHLATGNHQGQLNLFQLNPQAGILHEATLSGGHKAAIRCLDWHDDMLLTGGEDARVCQW 336          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: XP_012204962.1 (hypothetical protein SPRG_10447 [Saprolegnia parasitica CBS 223.65] >KDO24369.1 hypothetical protein SPRG_10447 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 134.0 bits (336), Expect = 9.200e-28
Identity = 102/382 (26.70%), Postives = 160/382 (41.88%), Query Frame = 0
Query:   10 PRMLRPSKTQITTLQ--APVSMGTEDFNGDDNEYILHCVHACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIR---GPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSRXXXXXXXXXXWE-------------------GSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGSWVTGGEDARLCLWGC-----KVEAGEGVAATRGTEKMTKKKKGKEIAHY 363
            P+ L  S T +T  +  A + M ++D    D EY++ C        V  ALS+  ++   R TL          H   I  +C S   P   +S S D T++LWD+R   GP ++     I    E  +C++G G  L+  G  +   F+D+R                                SEDG++CL+D  +   D+A++ I+N E  V    FFG E   +A LTGSE   +W+  +A R      +R A  ++ +           + +   YD   D+L L   D  G + +   +    + P  +L  GH   +R +D  D   +TGGED+RLC W       + +A  G+ A+   +    KK  K    Y
Sbjct:    6 PQTLALSSTVVTHFKQDATLQMTSDD---QDYEYVMDCKTTASKEHVILALSDKTLQARSRSTL--ACDRVIAAHNASINEVCVSETSPWCVLSGSNDGTMKLWDLRTDQGPAQS-----IRVGSEVWTCSMGCGDTLVVCGTTDRAVFYDTRTARKLGEYGESHMDNVTRVRFHPLRRSEVVTASEDGVVCLFDCTIADEDDAIISIINVESAVTQFAFFGHELHHMAFLTGSETLDLWNITTAQRLAHFPQIRDACNALDMPTE--------YLIDCKYDATSDQLHLVTGDHAGTVNI-ATLGESSLTPQAKLVGGHKTAIRCIDWDDNMLLTGGEDSRLCKWSASSGLFQQQATRGIRASVERDVSGLKKARKSSRPY 368          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: CBN75588.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.3 bits (334), Expect = 1.600e-27
Identity = 78/230 (33.91%), Postives = 107/230 (46.52%), Query Frame = 0
Query:   31 TEDFNGDDNEYILHCVHACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSR--------------------XXXXXXXXXXWEGSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLR 241
            ++D +G   EY+     +CD   + AALS+  +  Y   T+    +   KGH GP+T L  +P  PS F S+SED TVR WD R            +E+E  S  LG    L A G    I+F+D R                                GSEDGL+C +DT V   ++AL  ++NAECPVR + FFG EG+G+   T +E   +WH   A R     D+R
Sbjct:   38 SDDDDGPRLEYVTQLEMSCDNKQLAAALSSLEVNLYSVETM--ALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVRGWDTRSLATTITLGESGEEEEIYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVR 265          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: XP_002288251.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93687.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 119.4 bits (298), Expect = 2.300e-23
Identity = 99/319 (31.03%), Postives = 137/319 (42.95%), Query Frame = 0
Query:   79 QKGHIGPITSLC----------PSPD----HPSLFVSSSEDKTVRLWDIRGPNKNACT---AVINQE-----DEALSCTLGIGTELLAVGVGNA-IDFFDSRXXXXXXXXXXWEG-------------------------------SEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKID--DLRQAVPSMGIKEVGEQGGGGLFSVKYHY--------DQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWD--GSWVTGGEDARLCLW 332
            +K H GPI+ L           P+ D     P L +S+S+D TV+++D+R  N NA T   A I  +     ++AL  +LG G  L AVG   A + FFD R          W G                               SEDGL+ +YD      D AL+  LN   P+R++ FFG   +G+  LTG+E   VWHW SA +  +     LRQ +        G    G   +V+Y          D   D L L   + +G   + ++     + PV+ L+ GH   +R    WD  G  VTGGEDARLC W
Sbjct:   85 EKAHDGPISELSFFPADYYGLGPNADGNNLQPPLLISTSQDGTVKIYDLRCSN-NASTISSAEITSKLQLPNEQALCVSLGYGGTLAAVGTSKARVSFFDLRYTSGSRPSGNWMGNYVDAHTDEVTQVRFQTVTQASQAKTVLATASEDGLLSVYDPSQPSEDAALLSTLNVGTPIRNIGFFGPNYEGVYALTGNETMSVWHWDSAQKVSECGGYGLRQLLSDSAAGTFGVVCEGEGSAVEYLVGCSWAPVNDSTADALHLIAGNNQGDGFIFRI-DASQITPVIHLKGGHKGCIRDF-YWDNSGRLVTGGEDARLCEW 400          
BLAST of NO12G01320 vs. NCBI_GenBank
Match: GAY04136.1 (Hypothetical protein PINS_011950, partial [Pythium insidiosum])

HSP 1 Score: 118.2 bits (295), Expect = 5.200e-23
Identity = 89/340 (26.18%), Postives = 138/340 (40.59%), Query Frame = 0
Query:   16 SKTQITTLQAPVSMGTEDFNGDDNEYILHCVHACDGSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFDSRXXXXXXXXXXWE-------------------GSEDGLICLYDTGVGQADEALVCILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGG---MHPVMQLQQGHTALVRAV--DLWDGSWVTGGEDARLCLW 332
            ++T +T      S+     +  D +Y+L C        +  ALSN+ ++  +R +L     +    H   I  +  S   P    + S D+TV+ WD+R  N    + VI    E  S ++G G  LL  G      F+D R                                SEDG++C +D  +   D+A+  ILN E  V  + FFG + + +  LTG+E   +W+  +A R      LR+   + G+           + +   YD     L L   D  G L V+ +  GGG   +     +  GH A +R+   D    +  TGGEDARLC W
Sbjct:   12 AQTAVTNFGQGASLVANPTDEFDYDYVLDCQPTAQRGPLAIALSNFKVQLRNRESL--AQEAEFIAHDSTINEIWTSAVSPWQIATCSSDETVKFWDLRTRN---ASMVIPFGQEVWSLSVGCGDSLLVGGTNXKAHFYDVRMGKKLGAYGESHIDAVTRVRFHPLNPPYVVTASEDGVVCFFDCRIPNEDDAVESILNVESAVTKIGFFGPQYENIFCLTGTETLDLWNVWTAERIHHYQTLREDCTANGVPTD--------YLIDCVYDAASTELFLLAGDHNGSLNVVNI--GGGNAQLRHEAAMTGGHKACIRSAYYDAEQATLYTGGEDARLCRW 336          
The following BLAST results are available for this feature:
BLAST of NO12G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855470.11.100e-9256.08wd40 repeat-containing protein, partial [Nannochlo... [more]
OQS04043.13.300e-3330.81hypothetical protein THRCLA_03687 [Thraustotheca c... [more]
OQR92392.12.300e-3130.75hypothetical protein ACHHYP_03749 [Achlya hypogyna... [more]
XP_008606657.11.300e-2928.53hypothetical protein SDRG_02831 [Saprolegnia dicli... [more]
XP_009833216.14.900e-2929.71hypothetical protein H257_08846 [Aphanomyces astac... [more]
XP_008874846.11.100e-2828.43hypothetical protein H310_10284 [Aphanomyces invad... [more]
XP_012204962.19.200e-2826.70hypothetical protein SPRG_10447 [Saprolegnia paras... [more]
CBN75588.11.600e-2733.91conserved unknown protein [Ectocarpus siliculosus][more]
XP_002288251.12.300e-2331.03predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAY04136.15.200e-2326.18Hypothetical protein PINS_011950, partial [Pythium... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010051NSK010051Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01320.1NO12G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671391gene_5291Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01320.1NO12G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01320 ID=NO12G01320|Name=NO12G01320|organism=Nannochloropsis oceanica|type=gene|length=1531bp
ATGGCCCCCATCAACGCTGCGTTCGCACCTCGGATGCTCCGCCCATCCAA
GACTCAAATTACAACCCTACAGGCCCCGGTGAGCATGGGGACAGAGGACT
TTAACGGGGACGATAACGAgtaagtgtgggcattgccttggaagggtggg
ttttgtggaagggattgggcgggaggttgactgcccgtggattcgtatca
taaatcgataaatgtttgaaagcagcgaaccttgaagccatttatatgat
catagtttatggcatgccacaagaccggtaggtacagtaaaacggaagga
ggtttcaagggcggcacggaaggagaggagggaagggcatcaccaacaac
tccttcccctccatgcgcgggaccctacggggctgccctatgtcaacgaa
acgacgtcgtgaaaacaaccacacaaattctcgttaatccacgtttgtac
ctgtttcttacccgatactatcattaagGTACATCCTCCACTGCGTCCAC
GCCTGCGACGGCAGCACCGTGACCGCCGCCCTCTCCAACTACCACATCAA
GACCTACGACCGCCCCACGCTAAAGCCCACATCATCGTCCTCCCAAAAAG
GTCACATAGGCCCTATAACTAGTCTCTGTCCCTCCCCCGACCATCCCTCT
TTATTTGTGTCCTCATCAGAAGATAAGACTGTGCGTTTGTGGGATATTAG
AGGCCCTAATAAAAATGCATGCACAGCTGTAATAAATCAGGAAGACGAAG
CCCTATCTTGTACCTTGGGTATCGGAACAGAATTGCTTGCCGTGGGAGTG
GGAAACGCTATCGATTTCTTTGATAGCCGCAAGGCTGGAGGAGGAGGGGG
GGGGGGAAGTTGGGAAGgtacgcggacgtacatactgacttggtgacgaa
agtggcctttcatccgtcaagaagggctacactggcgtcagGCTCTGAGG
ATGGTTTAATCTGTTTGTATGACACGGGGGTAGGGCAGGCGGACGAGGCG
TTGGTGTGTATTTTAAATGCGGAGTGCCCGGTGAGGGATTTGACATTTTT
TGGGGTAGAAGGGGATGGGCTGGCTTTGTTGACAGGGAGTGAAGGGACGA
TGGTCTGGCATTGGCCCTCTGCAGCACGGGCGTTGAAAATTGATGATTTG
AGACAGGCTGTGCCTTCCATGGGGATTAAGGAGGTGGGAGAGCAAGGAGG
AGGGGGCTTGTTTTCGGTAAAATACCATTATGACCAGGGCGGGGATAGGT
TGTTGCTGGCGTTGAGTGATGTGGAGGGACAGTTAACGGTGCTGCAGGTG
ATGCCGGGAGGGGGCATGCATCCGGTGATGCAGCTGCAGCAGGGCCATAC
GGCATTGGTGCGAGCGGTGGATTTGTGGGATGGGTCGTGGGTGACGGGAG
GGGAGGATGCCCGCCTTTGCTTATGGGGATGCAAGGTGGAGGCTGGGGAA
GGGGTTGCTGCGACCAGAGGAACAGAAAAAATGACCAAGAAAAAGAAGGG
CAAGGAGATAGCACACTACAAGCCATATTAA
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protein sequence of NO12G01320.1

>NO12G01320.1-protein ID=NO12G01320.1-protein|Name=NO12G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MAPINAAFAPRMLRPSKTQITTLQAPVSMGTEDFNGDDNEYILHCVHACD
GSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFV
SSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNA
IDFFDSRKAGGGGGGGSWEGSEDGLICLYDTGVGQADEALVCILNAECPV
RDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKE
VGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQ
LQQGHTALVRAVDLWDGSWVTGGEDARLCLWGCKVEAGEGVAATRGTEKM
TKKKKGKEIAHYKPY*
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Synonyms
Publications