NO12G01320.1, NO12G01320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01320.1
Unique NameNO12G01320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr12:415525..417055 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:415525..417055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01320.1 vs.
Match: XP_005855470.1 (wd40 repeat-containing protein, partial [Nannochloropsis gaditana CCMP526]; XP_005856236.1 wd40 repeat-containing protein, partial [Nannochloropsis gaditana CCMP526]; EKU20123.1 wd40 repeat-containing protein, partial [Nannochloropsis gaditana CCMP526]; EKU20890.1 wd40 repeat-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 318.5 bits (815), Expect = 2.600e-83
Identity = 179/338 (52.96%), Postives = 219/338 (64.79%), Query Frame = 0
Query:   68 RPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFVSSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNAIDFFD-------SRKAGGGGGGGSWEGSEDGLICLYD-----------------TGVGQADEALV---------------CILNAECPVRDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKEVGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQLQQGHTALVRAVDLWDGSWVTGGEDARLCLWGCKVEAGEGVAATRGTEKMTKKKKGKEIA-HYKPY 366
            R TL+P SSS+ +GH+GP+T LCPSPDHPSL  SSSEDKTVRLWD+R   ++ C +VI Q DEALSC  G G+ LLAVGVG  +DFFD       SR A GG  GGS  GS + L    D                 T    +++ LV               CILNAE PVRD+TFFG +GDGLALLTGSEGT VWHWPSA RAL ++DLRQ+  S   ++        LFS++YHYDQG DRL LALSDVEG +TV++V PGG MHP+++L+ GH  LVRAVD  +G+WVTGGEDARLCLW  K + G+     + T    K+KKGK+ A H++PY
Sbjct:    1 RYTLEPKSSSALEGHLGPLTGLCPSPDHPSLLASSSEDKTVRLWDLRV--QSGCVSVIQQVDEALSCAFGKGSGLLAVGVGCHVDFFDARQTKQESRGASGGAQGGS-RGSGERLGRYADVHTDMVTKVVFHPSQTTTLASASEDGLVCLYDTGVSQADEALACILNAESPVRDMTFFGAKGDGLALLTGSEGTSVWHWPSALRALDVEDLRQSAGSFNREK-------ALFSIQYHYDQGTDRLRLALSDVEGSVTVVEVQPGGEMHPLLRLESGHKCLVRAVDSHNGTWVTGGEDARLCLWNEKEQEGQ---VNQSTAFDRKQKKGKKFAPHFQPY 325          
The following BLAST results are available for this feature:
BLAST of NO12G01320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855470.12.600e-8352.96wd40 repeat-containing protein, partial [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01320NO12G01320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01320.1NO12G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01320.1.cds1NO12G01320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01320.1.cds2NO12G01320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01320.1.cds3NO12G01320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01320.1 ID=NO12G01320.1|Name=NO12G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
ATGGCCCCCATCAACGCTGCGTTCGCACCTCGGATGCTCCGCCCATCCAA
GACTCAAATTACAACCCTACAGGCCCCGGTGAGCATGGGGACAGAGGACT
TTAACGGGGACGATAACGAGTACATCCTCCACTGCGTCCACGCCTGCGAC
GGCAGCACCGTGACCGCCGCCCTCTCCAACTACCACATCAAGACCTACGA
CCGCCCCACGCTAAAGCCCACATCATCGTCCTCCCAAAAAGGTCACATAG
GCCCTATAACTAGTCTCTGTCCCTCCCCCGACCATCCCTCTTTATTTGTG
TCCTCATCAGAAGATAAGACTGTGCGTTTGTGGGATATTAGAGGCCCTAA
TAAAAATGCATGCACAGCTGTAATAAATCAGGAAGACGAAGCCCTATCTT
GTACCTTGGGTATCGGAACAGAATTGCTTGCCGTGGGAGTGGGAAACGCT
ATCGATTTCTTTGATAGCCGCAAGGCTGGAGGAGGAGGGGGGGGGGGAAG
TTGGGAAGGCTCTGAGGATGGTTTAATCTGTTTGTATGACACGGGGGTAG
GGCAGGCGGACGAGGCGTTGGTGTGTATTTTAAATGCGGAGTGCCCGGTG
AGGGATTTGACATTTTTTGGGGTAGAAGGGGATGGGCTGGCTTTGTTGAC
AGGGAGTGAAGGGACGATGGTCTGGCATTGGCCCTCTGCAGCACGGGCGT
TGAAAATTGATGATTTGAGACAGGCTGTGCCTTCCATGGGGATTAAGGAG
GTGGGAGAGCAAGGAGGAGGGGGCTTGTTTTCGGTAAAATACCATTATGA
CCAGGGCGGGGATAGGTTGTTGCTGGCGTTGAGTGATGTGGAGGGACAGT
TAACGGTGCTGCAGGTGATGCCGGGAGGGGGCATGCATCCGGTGATGCAG
CTGCAGCAGGGCCATACGGCATTGGTGCGAGCGGTGGATTTGTGGGATGG
GTCGTGGGTGACGGGAGGGGAGGATGCCCGCCTTTGCTTATGGGGATGCA
AGGTGGAGGCTGGGGAAGGGGTTGCTGCGACCAGAGGAACAGAAAAAATG
ACCAAGAAAAAGAAGGGCAAGGAGATAGCACACTACAAGCCATATTAA
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protein sequence of NO12G01320.1

>NO12G01320.1-protein ID=NO12G01320.1-protein|Name=NO12G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MAPINAAFAPRMLRPSKTQITTLQAPVSMGTEDFNGDDNEYILHCVHACD
GSTVTAALSNYHIKTYDRPTLKPTSSSSQKGHIGPITSLCPSPDHPSLFV
SSSEDKTVRLWDIRGPNKNACTAVINQEDEALSCTLGIGTELLAVGVGNA
IDFFDSRKAGGGGGGGSWEGSEDGLICLYDTGVGQADEALVCILNAECPV
RDLTFFGVEGDGLALLTGSEGTMVWHWPSAARALKIDDLRQAVPSMGIKE
VGEQGGGGLFSVKYHYDQGGDRLLLALSDVEGQLTVLQVMPGGGMHPVMQ
LQQGHTALVRAVDLWDGSWVTGGEDARLCLWGCKVEAGEGVAATRGTEKM
TKKKKGKEIAHYKPY*
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mRNA from alignment at chr12:415525..417055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01320.1 ID=NO12G01320.1|Name=NO12G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp|location=Sequence derived from alignment at chr12:415525..417055- (Nannochloropsis oceanica)
ATGGCCCCCATCAACGCTGCGTTCGCACCTCGGATGCTCCGCCCATCCAA GACTCAAATTACAACCCTACAGGCCCCGGTGAGCATGGGGACAGAGGACT TTAACGGGGACGATAACGAGTAAGTGTGGGCATTGCCTTGGAAGGGTGGG TTTTGTGGAAGGGATTGGGCGGGAGGTTGACTGCCCGTGGATTCGTATCA TAAATCGATAAATGTTTGAAAGCAGCGAACCTTGAAGCCATTTATATGAT CATAGTTTATGGCATGCCACAAGACCGGTAGGTACAGTAAAACGGAAGGA GGTTTCAAGGGCGGCACGGAAGGAGAGGAGGGAAGGGCATCACCAACAAC TCCTTCCCCTCCATGCGCGGGACCCTACGGGGCTGCCCTATGTCAACGAA ACGACGTCGTGAAAACAACCACACAAATTCTCGTTAATCCACGTTTGTAC CTGTTTCTTACCCGATACTATCATTAAGGTACATCCTCCACTGCGTCCAC GCCTGCGACGGCAGCACCGTGACCGCCGCCCTCTCCAACTACCACATCAA GACCTACGACCGCCCCACGCTAAAGCCCACATCATCGTCCTCCCAAAAAG GTCACATAGGCCCTATAACTAGTCTCTGTCCCTCCCCCGACCATCCCTCT TTATTTGTGTCCTCATCAGAAGATAAGACTGTGCGTTTGTGGGATATTAG AGGCCCTAATAAAAATGCATGCACAGCTGTAATAAATCAGGAAGACGAAG CCCTATCTTGTACCTTGGGTATCGGAACAGAATTGCTTGCCGTGGGAGTG GGAAACGCTATCGATTTCTTTGATAGCCGCAAGGCTGGAGGAGGAGGGGG GGGGGGAAGTTGGGAAGGTACGCGGACGTACATACTGACTTGGTGACGAA AGTGGCCTTTCATCCGTCAAGAAGGGCTACACTGGCGTCAGGCTCTGAGG ATGGTTTAATCTGTTTGTATGACACGGGGGTAGGGCAGGCGGACGAGGCG TTGGTGTGTATTTTAAATGCGGAGTGCCCGGTGAGGGATTTGACATTTTT TGGGGTAGAAGGGGATGGGCTGGCTTTGTTGACAGGGAGTGAAGGGACGA TGGTCTGGCATTGGCCCTCTGCAGCACGGGCGTTGAAAATTGATGATTTG AGACAGGCTGTGCCTTCCATGGGGATTAAGGAGGTGGGAGAGCAAGGAGG AGGGGGCTTGTTTTCGGTAAAATACCATTATGACCAGGGCGGGGATAGGT TGTTGCTGGCGTTGAGTGATGTGGAGGGACAGTTAACGGTGCTGCAGGTG ATGCCGGGAGGGGGCATGCATCCGGTGATGCAGCTGCAGCAGGGCCATAC GGCATTGGTGCGAGCGGTGGATTTGTGGGATGGGTCGTGGGTGACGGGAG GGGAGGATGCCCGCCTTTGCTTATGGGGATGCAAGGTGGAGGCTGGGGAA GGGGTTGCTGCGACCAGAGGAACAGAAAAAATGACCAAGAAAAAGAAGGG CAAGGAGATAGCACACTACAAGCCATATTAA
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Coding sequence (CDS) from alignment at chr12:415525..417055-

>NO12G01320.1 ID=NO12G01320.1|Name=NO12G01320.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr12:415525..417055- (Nannochloropsis oceanica)
ATGGCCCCCATCAACGCTGCGTTCGCACCTCGGATGCTCCGCCCATCCAA
GACTCAAATTACAACCCTACAGGCCCCGGTGAGCATGGGGACAGAGGACT
TTAACGGGGACGATAACGAGTACATCCTCCACTGCGTCCACGCCTGCGAC
GGCAGCACCGTGACCGCCGCCCTCTCCAACTACCACATCAAGACCTACGA
CCGCCCCACGCTAAAGCCCACATCATCGTCCTCCCAAAAAGGTCACATAG
GCCCTATAACTAGTCTCTGTCCCTCCCCCGACCATCCCTCTTTATTTGTG
TCCTCATCAGAAGATAAGACTGTGCGTTTGTGGGATATTAGAGGCCCTAA
TAAAAATGCATGCACAGCTGTAATAAATCAGGAAGACGAAGCCCTATCTT
GTACCTTGGGTATCGGAACAGAATTGCTTGCCGTGGGAGTGGGAAACGCT
ATCGATTTCTTTGATAGCCGCAAGGCTGGAGGAGGAGGGGGGGGGGGAAG
TTGGGAAGGCTCTGAGGATGGTTTAATCTGTTTGTATGACACGGGGGTAG
GGCAGGCGGACGAGGCGTTGGTGTGTATTTTAAATGCGGAGTGCCCGGTG
AGGGATTTGACATTTTTTGGGGTAGAAGGGGATGGGCTGGCTTTGTTGAC
AGGGAGTGAAGGGACGATGGTCTGGCATTGGCCCTCTGCAGCACGGGCGT
TGAAAATTGATGATTTGAGACAGGCTGTGCCTTCCATGGGGATTAAGGAG
GTGGGAGAGCAAGGAGGAGGGGGCTTGTTTTCGGTAAAATACCATTATGA
CCAGGGCGGGGATAGGTTGTTGCTGGCGTTGAGTGATGTGGAGGGACAGT
TAACGGTGCTGCAGGTGATGCCGGGAGGGGGCATGCATCCGGTGATGCAG
CTGCAGCAGGGCCATACGGCATTGGTGCGAGCGGTGGATTTGTGGGATGG
GTCGTGGGTGACGGGAGGGGAGGATGCCCGCCTTTGCTTATGGGGATGCA
AGGTGGAGGCTGGGGAAGGGGTTGCTGCGACCAGAGGAACAGAAAAAATG
ACCAAGAAAAAGAAGGGCAAGGAGATAGCACACTACAAGCCATATTAA
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Synonyms
Publications