NO12G01210, NO12G01210 (gene) Nannochloropsis oceanica

Overview
NameNO12G01210
Unique NameNO12G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr12:376664..377899 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:376664..377899 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO12G01210 vs. NCBI_GenBank
Match: EWM25904.1 (hypothetical protein Naga_100048g19 [Nannochloropsis gaditana])

HSP 1 Score: 129.4 bits (324), Expect = 1.800e-26
Identity = 90/184 (48.91%), Postives = 119/184 (64.67%), Query Frame = 0 
Query:  103 FPGTKAPSTCSEE--------GQQERELPTQPRVYLSHHWPLVMRLAFNFQRILTRVIESPF-FPEARATRLRSRALQEMRLNDEPLQXXXXXXXXXXXXXXXRFRAVAEKHLQAQREQHRAALRAVQPLMLNGHEQDCVSPRCLSDGSFPFFRWLENQQRRLISAQSLCNFILQWGKGELELE 278
            F    +P+T +EE         + E  + T+P  + S  +P         + ++T+ IESP  FPEA  TR R RALQEM+       XXXXXXXXXXXXXXX     ++ HL+A+RE+HRA +RAVQP+MLNG EQDCVSPRCL DG++P FR LE +  +++S +SLC FIL WG+GE+E E
Sbjct:  112 FKAKVSPNTAAEEISLDSSSNTRDEECISTKPNSFFSWSFP-------KLEAMMTQFIESPIVFPEAPVTRFRRRALQEMQ-XXXXXXXXXXXXXXXXXXXXXXXXLHSDIHLRAERERHRAVMRAVQPIMLNGREQDCVSPRCLRDGTYPAFRKLERKMLKMLSPESLCVFILDWGRGEIEFE 287
The following BLAST results are available for this feature:
BLAST of NO12G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25904.11.800e-2648.91hypothetical protein Naga_100048g19 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010039NSK010039Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01210.1NO12G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591985gene_5277Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100048g19gene4618Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01210.1NO12G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01210 ID=NO12G01210|Name=NO12G01210|organism=Nannochloropsis oceanica|type=gene|length=1236bp
ATGCCGCCTTCGTCCAACAATACCGTGGGCTCGTCGTCGTCCAACCCAAA
GAAGCGCAAGAAGGAGATGAAGAAGCGGAACAAACAAAGGGATAAGAAGG
AGGCGGTCGCCAACAAGCATCATCACAAGAAGCGTAAGCACAGGGAGCAC
AAGGAGTCCCGACGCAGCAGCAGTGGCAAGCGCAATATTTTTGGGCTGCA
CGTGTATTTGATTGTCCTGACTGTGGTATCCGTGATGATAACTAGCATGG
GTGTGTATTATTACAAGAAGACCACCCGAAGCCTGATGCCTCCCGCGGGA
GTACTATTCCCTGGTACAAAGGCACCAAGCACATGCTCAGAAGAAGGACA
ACAAGAACGAGAATTGCCAACACAACCTCGAGTATACTTGAGTCACCACT
GGCCTTTGGTAATGAGGTTGGCATTTAATTTTCAGgtacttgcaatttta
gggcgcggggcgggtgccttaacatcacttttcggtcaagacatgctttt
cgcaaccattacgctgcgcattctcatgccctatttcttcgtgaatcgac
acagAGAATCCTAACGCGTGTGATCGAGTCACCCTTCTTCCCAGAAGCCC
GTGCCACGCGCCTAAGAAGCAGGgtatgttgaattcgaagttgtcgacct
tttggctgatggaggagtccttccactctcaccgcaatactcgacgtctc
cctcctacttacgacggcagGCCTTGCAAGAAATGCGGCTGAATGATGAA
CCCCTTCAAGACGATCCCCCGTATCGCCCTTTCCCTGGGTATGCTCCTCG
ACCTCGCTTTCGAGCCGTTGCGGAGAAACACCTGCAGGCGCAAAGAGAGC
AGCATCGGGCTGCCTTGCGTGCAGTCCAGCCTTTGATGTTAAATGGTCAC
GAGCAAGgtaagcggaaaaggattatcttagggttgttttgtatattttt
aaaagtctcgtcgtactattgttctcgcttgcgtacatgacgggcttgag
ctgctcattctctttctatcccatctgcccattttggaatcatttcagAC
TGCGTTAGCCCCCGCTGTCTCTCAGACGGCTCCTTTCCGTTTTTTCGGTG
GCTTGAGAATCAGCAACGGCGACTGATCAGCGCACAGAGTCTATGCAATT
TTATTCTGCAATGGGGCAAAGGAGAGCTGGAATTGGAGGCGTCCAAATTA
AGCGGGATGCATGAAGCCAGCGCTCGACAGCTTTGA
back to top

protein sequence of NO12G01210.1

>NO12G01210.1-protein ID=NO12G01210.1-protein|Name=NO12G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MPPSSNNTVGSSSSNPKKRKKEMKKRNKQRDKKEAVANKHHHKKRKHREH
KESRRSSSGKRNIFGLHVYLIVLTVVSVMITSMGVYYYKKTTRSLMPPAG
VLFPGTKAPSTCSEEGQQERELPTQPRVYLSHHWPLVMRLAFNFQRILTR
VIESPFFPEARATRLRSRALQEMRLNDEPLQDDPPYRPFPGYAPRPRFRA
VAEKHLQAQREQHRAALRAVQPLMLNGHEQDCVSPRCLSDGSFPFFRWLE
NQQRRLISAQSLCNFILQWGKGELELEASKLSGMHEASARQL*
back to top
Synonyms
Publications