NO12G01210.1, NO12G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01210.1
Unique NameNO12G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length879
Alignment locationchr12:376664..377899 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:376664..377899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01210.1 vs.
Match: EWM25904.1 (hypothetical protein Naga_100048g19 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 8.400e-32
Identity = 118/298 (39.60%), Postives = 163/298 (54.70%), Query Frame = 0 
Query:    1 MPPSSNNTV----GSSSSNPKKRKKEMKKRNKQRDKKEAVANKHHHKKRKHREHKESRRSS--SGKRNIFGLHV---YLIVLTV--VSVMITSMGVYYYKKTTRSLMPPAGVL-FPGTKAPSTCSEE--------GQQERELPTQPRVYLSHHWPLVMRLAFNFQRILTRVIESPF-FPEARATRLRSRALQEMRLNDEPLQDDPPYRPFPGYAPRPRFRAVAEKHLQAQREQHRAALRAVQPLMLNGHEQDCVSPRCLSDGSFPFFRWLENQQRRLISAQSLCNFILQWGKGELELE 278
            MP SS+ TV     +S+ + KKR+   +K+N  R        KH            S R+   +G R +    +   Y   LTV  V+ M+   G       ++     AG   F    +P+T +EE         + E  + T+P  + S  +P         + ++T+ IESP  FPEA  TR R RALQEM+LNDEPLQD+PP    PGYA  P     ++ HL+A+RE+HRA +RAVQP+MLNG EQDCVSPRCL DG++P FR LE +  +++S +SLC FIL WG+GE+E E
Sbjct:    1 MPTSSDGTVTQAPSTSNGSTKKRRGGKRKKNTGRPDDNP---KHPAPGDPSSVGSGSNRNRICNGNRRLLSYALSPAYWFALTVSMVAFMVLRRGSTRISGFSQVTPGAAGSRDFKAKVSPNTAAEEISLDSSSNTRDEECISTKPNSFFSWSFP-------KLEAMMTQFIESPIVFPEAPVTRFRRRALQEMQLNDEPLQDNPPRYVPPGYA-FPSQVLHSDIHLRAERERHRAVMRAVQPIMLNGREQDCVSPRCLRDGTYPAFRKLERKMLKMLSPESLCVFILDWGRGEIEFE 287
The following BLAST results are available for this feature:
BLAST of NO12G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25904.18.400e-3239.60hypothetical protein Naga_100048g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01210NO12G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01210.1NO12G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01210.1.cds1NO12G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01210.1.cds2NO12G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01210.1.cds3NO12G01210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01210.1.cds4NO12G01210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01210.1 ID=NO12G01210.1|Name=NO12G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGCCGCCTTCGTCCAACAATACCGTGGGCTCGTCGTCGTCCAACCCAAA
GAAGCGCAAGAAGGAGATGAAGAAGCGGAACAAACAAAGGGATAAGAAGG
AGGCGGTCGCCAACAAGCATCATCACAAGAAGCGTAAGCACAGGGAGCAC
AAGGAGTCCCGACGCAGCAGCAGTGGCAAGCGCAATATTTTTGGGCTGCA
CGTGTATTTGATTGTCCTGACTGTGGTATCCGTGATGATAACTAGCATGG
GTGTGTATTATTACAAGAAGACCACCCGAAGCCTGATGCCTCCCGCGGGA
GTACTATTCCCTGGTACAAAGGCACCAAGCACATGCTCAGAAGAAGGACA
ACAAGAACGAGAATTGCCAACACAACCTCGAGTATACTTGAGTCACCACT
GGCCTTTGGTAATGAGGTTGGCATTTAATTTTCAGAGAATCCTAACGCGT
GTGATCGAGTCACCCTTCTTCCCAGAAGCCCGTGCCACGCGCCTAAGAAG
CAGGGCCTTGCAAGAAATGCGGCTGAATGATGAACCCCTTCAAGACGATC
CCCCGTATCGCCCTTTCCCTGGGTATGCTCCTCGACCTCGCTTTCGAGCC
GTTGCGGAGAAACACCTGCAGGCGCAAAGAGAGCAGCATCGGGCTGCCTT
GCGTGCAGTCCAGCCTTTGATGTTAAATGGTCACGAGCAAGACTGCGTTA
GCCCCCGCTGTCTCTCAGACGGCTCCTTTCCGTTTTTTCGGTGGCTTGAG
AATCAGCAACGGCGACTGATCAGCGCACAGAGTCTATGCAATTTTATTCT
GCAATGGGGCAAAGGAGAGCTGGAATTGGAGGCGTCCAAATTAAGCGGGA
TGCATGAAGCCAGCGCTCGACAGCTTTGA
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protein sequence of NO12G01210.1

>NO12G01210.1-protein ID=NO12G01210.1-protein|Name=NO12G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MPPSSNNTVGSSSSNPKKRKKEMKKRNKQRDKKEAVANKHHHKKRKHREH
KESRRSSSGKRNIFGLHVYLIVLTVVSVMITSMGVYYYKKTTRSLMPPAG
VLFPGTKAPSTCSEEGQQERELPTQPRVYLSHHWPLVMRLAFNFQRILTR
VIESPFFPEARATRLRSRALQEMRLNDEPLQDDPPYRPFPGYAPRPRFRA
VAEKHLQAQREQHRAALRAVQPLMLNGHEQDCVSPRCLSDGSFPFFRWLE
NQQRRLISAQSLCNFILQWGKGELELEASKLSGMHEASARQL*
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mRNA from alignment at chr12:376664..377899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01210.1 ID=NO12G01210.1|Name=NO12G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp|location=Sequence derived from alignment at chr12:376664..377899- (Nannochloropsis oceanica)
ATGCCGCCTTCGTCCAACAATACCGTGGGCTCGTCGTCGTCCAACCCAAA
GAAGCGCAAGAAGGAGATGAAGAAGCGGAACAAACAAAGGGATAAGAAGG
AGGCGGTCGCCAACAAGCATCATCACAAGAAGCGTAAGCACAGGGAGCAC
AAGGAGTCCCGACGCAGCAGCAGTGGCAAGCGCAATATTTTTGGGCTGCA
CGTGTATTTGATTGTCCTGACTGTGGTATCCGTGATGATAACTAGCATGG
GTGTGTATTATTACAAGAAGACCACCCGAAGCCTGATGCCTCCCGCGGGA
GTACTATTCCCTGGTACAAAGGCACCAAGCACATGCTCAGAAGAAGGACA
ACAAGAACGAGAATTGCCAACACAACCTCGAGTATACTTGAGTCACCACT
GGCCTTTGGTAATGAGGTTGGCATTTAATTTTCAGGTACTTGCAATTTTA
GGGCGCGGGGCGGGTGCCTTAACATCACTTTTCGGTCAAGACATGCTTTT
CGCAACCATTACGCTGCGCATTCTCATGCCCTATTTCTTCGTGAATCGAC
ACAGAGAATCCTAACGCGTGTGATCGAGTCACCCTTCTTCCCAGAAGCCC
GTGCCACGCGCCTAAGAAGCAGGGTATGTTGAATTCGAAGTTGTCGACCT
TTTGGCTGATGGAGGAGTCCTTCCACTCTCACCGCAATACTCGACGTCTC
CCTCCTACTTACGACGGCAGGCCTTGCAAGAAATGCGGCTGAATGATGAA
CCCCTTCAAGACGATCCCCCGTATCGCCCTTTCCCTGGGTATGCTCCTCG
ACCTCGCTTTCGAGCCGTTGCGGAGAAACACCTGCAGGCGCAAAGAGAGC
AGCATCGGGCTGCCTTGCGTGCAGTCCAGCCTTTGATGTTAAATGGTCAC
GAGCAAGGTAAGCGGAAAAGGATTATCTTAGGGTTGTTTTGTATATTTTT
AAAAGTCTCGTCGTACTATTGTTCTCGCTTGCGTACATGACGGGCTTGAG
CTGCTCATTCTCTTTCTATCCCATCTGCCCATTTTGGAATCATTTCAGAC
TGCGTTAGCCCCCGCTGTCTCTCAGACGGCTCCTTTCCGTTTTTTCGGTG
GCTTGAGAATCAGCAACGGCGACTGATCAGCGCACAGAGTCTATGCAATT
TTATTCTGCAATGGGGCAAAGGAGAGCTGGAATTGGAGGCGTCCAAATTA
AGCGGGATGCATGAAGCCAGCGCTCGACAGCTTTGA
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Coding sequence (CDS) from alignment at chr12:376664..377899-

>NO12G01210.1 ID=NO12G01210.1|Name=NO12G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr12:376664..377899- (Nannochloropsis oceanica)
ATGCCGCCTTCGTCCAACAATACCGTGGGCTCGTCGTCGTCCAACCCAAA
GAAGCGCAAGAAGGAGATGAAGAAGCGGAACAAACAAAGGGATAAGAAGG
AGGCGGTCGCCAACAAGCATCATCACAAGAAGCGTAAGCACAGGGAGCAC
AAGGAGTCCCGACGCAGCAGCAGTGGCAAGCGCAATATTTTTGGGCTGCA
CGTGTATTTGATTGTCCTGACTGTGGTATCCGTGATGATAACTAGCATGG
GTGTGTATTATTACAAGAAGACCACCCGAAGCCTGATGCCTCCCGCGGGA
GTACTATTCCCTGGTACAAAGGCACCAAGCACATGCTCAGAAGAAGGACA
ACAAGAACGAGAATTGCCAACACAACCTCGAGTATACTTGAGTCACCACT
GGCCTTTGGTAATGAGGTTGGCATTTAATTTTCAGAGAATCCTAACGCGT
GTGATCGAGTCACCCTTCTTCCCAGAAGCCCGTGCCACGCGCCTAAGAAG
CAGGGCCTTGCAAGAAATGCGGCTGAATGATGAACCCCTTCAAGACGATC
CCCCGTATCGCCCTTTCCCTGGGTATGCTCCTCGACCTCGCTTTCGAGCC
GTTGCGGAGAAACACCTGCAGGCGCAAAGAGAGCAGCATCGGGCTGCCTT
GCGTGCAGTCCAGCCTTTGATGTTAAATGGTCACGAGCAAGACTGCGTTA
GCCCCCGCTGTCTCTCAGACGGCTCCTTTCCGTTTTTTCGGTGGCTTGAG
AATCAGCAACGGCGACTGATCAGCGCACAGAGTCTATGCAATTTTATTCT
GCAATGGGGCAAAGGAGAGCTGGAATTGGAGGCGTCCAAATTAAGCGGGA
TGCATGAAGCCAGCGCTCGACAGCTTTGA
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Synonyms
Publications