NO12G01130, NO12G01130 (gene) Nannochloropsis oceanica

Overview
NameNO12G01130
Unique NameNO12G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2476
Alignment locationchr12:355997..358472 -

Link to JBrowse

Properties
Property NameValue
DescriptionPeriplasmic binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:355997..358472 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR002491ABC_transptr_periplasmic_BD
Homology
BLAST of NO12G01130 vs. NCBI_GenBank
Match: EWM25907.1 (periplasmic binding protein [Nannochloropsis gaditana])

HSP 1 Score: 534.6 bits (1376), Expect = 3.200e-148
Identity = 260/324 (80.25%), Postives = 289/324 (89.20%), Query Frame = 0
Query:  167 PLRIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIHGGENFPWTGAEDAFARVPVEGEEGRGETKE 491
            PLRIASFLPAATEMLFSLGLGD V GITHECDYPPEAK+KPVVVECVL+LEGL+MKEIDEAVSARLKSGKSLYNVNE+KLR AAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPP IVWQTPKTFEEVL AYLELG+ TGKE+E++ WV+ SR +V +IR  VQ  +  +     VRVAFVEWIDPIFAGGHWVGEMLEWAGG+D NSRKG+DSVR+PW++V+AW PEVIIVSPCGFDL+KS EQA+LLM+R+GF  LPAAK DRVYAVDANGYFARPGIRLV+G+LLLAH+IHG ++FPWTG  DAFA VPVEGE G  E +E
Sbjct:   17 PLRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAFAHVPVEGEGGGREAEE 340          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: WP_079566386.1 (cobalamin-binding protein [Bradyrhizobium erythrophlei] >SHG48566.1 iron complex transport system substrate-binding protein [Bradyrhizobium erythrophlei])

HSP 1 Score: 326.6 bits (836), Expect = 1.300e-85
Identity = 163/309 (52.75%), Postives = 211/309 (68.28%), Query Frame = 0
Query:  169 RIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIHGGENFPWTGAEDAFARV 478
            RI SFLP+ATEM+ +LGLGD + G+THECDYPPE   K VVV  VL +E ++  EID AV+ RL+ G SLY V+E  +R  AP L++TQ LCQVC PSGNEV+Q+LK L   P I+W TPK+ E++     +LG ATG+   AE  + E RA++++I    +A  SR       RV  +EW+DP++  GHWV EM+  AGG D   R+G DSVR+PW DVL W+PEV+IV PCGF L+K+ +QA++L    G+ DLPA    RVYAVDAN YFARPG R+VEG  LLAH++H G  F W G   AF ++
Sbjct:    6 RIVSFLPSATEMVCALGLGDRLLGVTHECDYPPEIAGKTVVVRNVLPIETMSQPEIDSAVTQRLRDGLSLYRVDETLMREIAPDLILTQELCQVCAPSGNEVSQLLKVLPSQPQILWLTPKSLEQIFDNLRDLGEATGRSHIAENLIAEGRARLEKIEAAARAAPSRP------RVFCMEWMDPVYCCGHWVPEMVRIAGGIDGLGREGTDSVRIPWQDVLQWKPEVLIVMPCGFGLEKAADQARMLASYPGWADLPAVGDGRVYAVDANAYFARPGPRVVEGTELLAHLLHPG-LFEWKGPPGAFRKL 307          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: WP_072817977.1 (cobalamin-binding protein [Bradyrhizobium erythrophlei] >SHN72543.1 iron complex transport system substrate-binding protein [Bradyrhizobium erythrophlei])

HSP 1 Score: 318.2 bits (814), Expect = 4.800e-83
Identity = 157/309 (50.81%), Postives = 214/309 (69.26%), Query Frame = 0
Query:  169 RIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIHGGENFPWTGAEDAFARV 478
            RI SFLP+ATEM  +LGL D + GITHECDYPP+   KPVVV  VL +E ++  EID AV+ RL+ G+SLY V E  ++  AP L++TQ+LCQVC PSGNE++Q+L +L   P ++W TPK+ E++     ELG ATG+ + AE  + + +A++ +I    +A++SR       RV  +EW+DP++  GHWV EM+  AGG D   R+G DSVR+ WDDVL W+PEV+IV PCGFDL+K+ ++A+ L    G+ DLPA +   VYAVDAN YFARPG R++EG  LLAH++H  E F W G  +AF R+
Sbjct:    6 RIVSFLPSATEMACALGLSDQLLGITHECDYPPQIMGKPVVVRNVLPIESMSQAEIDVAVTQRLRDGQSLYRVEEALMQDIAPDLILTQDLCQVCAPSGNEISQLLTSLPSKPQVLWLTPKSLEQIFDNLRELGEATGRSEMAETLIADGQARLAKIESVTRALVSRP------RVFCMEWMDPVYCCGHWVPEMVRMAGGLDKLGREGADSVRIRWDDVLEWKPEVLIVMPCGFDLEKTFKEAQRLTAYPGWDDLPAVRNGCVYAVDANSYFARPGPRVIEGTELLAHLLH-PELFEWRGPANAFRRL 307          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: OIO38651.1 (hypothetical protein AUJ72_02145 [Candidatus Omnitrophica bacterium CG1_02_46_14])

HSP 1 Score: 300.8 bits (769), Expect = 7.900e-78
Identity = 149/309 (48.22%), Postives = 211/309 (68.28%), Query Frame = 0
Query:  168 LRIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIHGGENFPWTGAEDAFAR 477
            +RI SFLP+ATE++ SLGL D + GITHEC+YPPEA+ KP+VV   + +EG+T +EIDE VS  L+SG +LY VNE  LR   P +++TQ+LCQVC PSGNE++ VLK+L   P I+  TPK    +    L +G A GK   A K ++  + +V+ +R   + +       K  RV  +EW DP++ GGHW+ E+ E AGG DA +R+G+DSVR+ W +V  W PEV+I+SPCG+++K + ++AK L +   + +LPA K ++VYAVDA  YFARPG R+V+G+ LLAH+IH  E F W G ++A+ R
Sbjct:    1 MRIVSFLPSATEIVCSLGLADELVGITHECNYPPEAQGKPIVVRNEIKMEGMTDREIDETVSRVLRSGGTLYRVNESLLRELDPDIIMTQDLCQVCAPSGNEISVVLKSLPRKPQILRLTPKNLSGIFENILTVGTAAGKTDVANKNIEVLKVRVEFVRNEAKKIR------KKPRVFLMEWFDPLYCGGHWIQELTEIAGGCDALARQGRDSVRISWREVKDWAPEVLILSPCGYNVKDAVKRAKDLPREPVWNELPAVKMNQVYAVDAQSYFARPGPRIVDGLELLAHLIH-PEEFDWQGPQNAYER 302          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: WP_090571710.1 (cobalamin-binding protein [Nitrosomonas sp. Nm33] >SDY87197.1 iron complex transport system substrate-binding protein [Nitrosomonas sp. Nm33])

HSP 1 Score: 290.0 bits (741), Expect = 1.400e-74
Identity = 144/318 (45.28%), Postives = 209/318 (65.72%), Query Frame = 0
Query:  169 RIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQ---------AKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIHGGENFPWTGAEDAFARV 478
            RI SFLP+ATEM+ +LGL D + GITHEC+YP   K+KP+VV  VL +E ++  EID AV+ RL+ G+SLY ++E+ L   AP L++TQNLCQVC PSGNEV+QVLK L   P I+W TP++  E+  +  +L  A G+ ++ E+ + + RA++++++     +  R       RV  +EW+DP++A GHWV EM++ AGG D     G +SVRV W+ +  W PEV+++ PCGF+L+++ +Q         +     R  F +LPA + +RV+AVDAN +FARPG R+V+G  LLAH+ H  E F W G  DAF +V
Sbjct:    3 RIVSFLPSATEMVCALGLSDSLVGITHECNYPELVKRKPIVVRNVLPVETMSQSEIDRAVAERLRDGQSLYQIDEELLASLAPDLILTQNLCQVCAPSGNEVSQVLKALPHEPQILWMTPQSLSEIFDSLRDLDAAVGQTEKVEELIADCRARLEKLKSKTSRLAYRP------RVFCMEWLDPVYACGHWVPEMVKIAGGMDEIGSDGGESVRVAWERLAEWAPEVLVMMPCGFNLQQTMKQIWQHFGPYSSFAAENRAAFFNLPAVRDNRVFAVDANSFFARPGPRVVDGTELLAHLFHPNE-FSWDGPTDAFQQV 313          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: KRT62957.1 (periplasmic binding protein, iron complex transport system substrate-binding protein [Candidatus Dadabacteria bacterium CSP1-2])

HSP 1 Score: 259.2 bits (661), Expect = 2.600e-65
Identity = 123/293 (41.98%), Postives = 193/293 (65.87%), Query Frame = 0
Query:  168 LRIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIH 461
            +RI SFLP+ATE++++LGLGD + G+THECDYPPEA+ KP V+  +++ E LT  EID+AVS   K+GKS Y V+ + LR   P +++TQ LC VC  SGNEV +V+K L   P I+   P T +E+L+  L +G AT +++++E  V   R+++  I+  +     R       RV  +EW+DP +  GHWV EM+  AGGD    + GK S +V WD++  + P+VI++ PCGF+++++  + ++L   + +  +PA ++  VY VDAN YF+RPG R+++G+ +LA ++H
Sbjct:    1 MRICSFLPSATEIVYALGLGDNLVGVTHECDYPPEARSKPRVIASLINPEDLTSYEIDKAVSENYKAGKSTYIVDVETLRRTNPDIIITQGLCDVCAVSGNEVKEVVKVLGHKPQIISLEPNTLDEILNTILLVGEATERKEQSEYLVNNLRSRIAAIKSLLGEEKDRP------RVFCMEWLDPPYVAGHWVPEMVRIAGGDYGFGKVGKPSFKVSWDEIFDFAPQVIVLMPCGFNIERTLREVEILTSNEYWHRIPAVRKGHVYLVDANSYFSRPGPRILDGLKILARILH 287          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: GBD38425.1 (Vitamin B12-binding protein [bacterium HR37])

HSP 1 Score: 255.8 bits (652), Expect = 2.900e-64
Identity = 125/293 (42.66%), Postives = 186/293 (63.48%), Query Frame = 0
Query:  168 LRIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIH 461
            +RI SFLP+ATE+LF LGLG+ + G+THECDYPPEAK KP VV  ++D   LT +EI+  V    +SGKS Y V ++ L  A P ++ TQ LC VC  SGNEV + +  L   P IV   P T EE+L   L +G  TG+E  A + V + RA+++ +R  V     R       RV  +EW+DP +  GHW+ EM++ AGG    ++ G+ S +V W+++  + P+VI+V PCGFD++++ E+ ++L   + +  LPA ++  VY VDAN YF+R G R+V+G+ ++A ++H
Sbjct:    1 MRICSFLPSATEILFELGLGEYIVGVTHECDYPPEAKSKPRVVVSLIDPSRLTSREIERIVGENYRSGKSTYLVEKESLLKARPDIIFTQKLCDVCAVSGNEVKEAVDVLGYSPKIVSLEPSTLEEILDTILIVGEVTGRETRAREVVNKLRARIEAVRTMVGNEKDRP------RVFCLEWLDPPYTAGHWIPEMVDIAGGICGFAKPGQPSFKVSWEEIYEFAPQVIVVMPCGFDIERTLEEIEILNSNEFWYRLPAVRKGHVYLVDANSYFSRSGPRVVDGLEIIARILH 287          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: OLC72603.1 (hypothetical protein AUH87_01295, partial [Deltaproteobacteria bacterium 13_1_40CM_4_54_4])

HSP 1 Score: 243.4 bits (620), Expect = 1.500e-60
Identity = 122/278 (43.88%), Postives = 173/278 (62.23%), Query Frame = 0
Query:  168 LRIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPG 446
            +RI S LP+ATE+ F+LGLGD V G+THECDYP EA+QKP+VV  ++D   ++  EID  VS RL+   SLY ++E K R AAP L++TQ LC+VC    NEV    K+LK P TI+  +P    +VL     +G  T +   A   VQ S  +++ +R+      +R       RVA +EW DP++A GHWV EM+E AGG D   R+ + S RV W  VL   PE+I++ PCGF+L+++ +++ +L K  G+  LPA K   VY V+ + +F+RPG
Sbjct:    1 MRICSLLPSATEIAFALGLGDDVVGVTHECDYPHEARQKPIVVRSLIDANPMSSAEIDGWVSERLRGNLSLYGIDEVKFREAAPDLILTQELCEVCAVDYNEVAAAAKSLKEPATILALSPHCLTDVLRDIERVGAVTARADAARALVQRSHERIERVRQTAAQSNTRP------RVACLEWFDPVYAAGHWVPEMVELAGGFDVLGRREEPSARVEWTQVLDSVPEIIVLMPCGFELRRTIQESAVLQKLPGWNHLPAVKNGHVYGVNGSAFFSRPG 272          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: OGE24557.1 (hypothetical protein A3J42_10440 [Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21])

HSP 1 Score: 243.0 bits (619), Expect = 2.000e-60
Identity = 120/293 (40.96%), Postives = 184/293 (62.80%), Query Frame = 0
Query:  168 LRIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIH 461
            +RI SFLP+ TE+L+ LGLG+ V G+THECDYPPEA++K  V+   +D   L+ +EIDE VS     GKS Y +++D L+ A P L++TQ LCQVC  SGNEVT+ ++ L   P I+   P+T  E++   L +G ATG    A    +E   K+ E  E V++++  +      RV  +EW+DP +  GHWV EM+E AGG     + G+ S +V W ++  + P+++ + PCG+D++K+  + + + K D +  LP+  + ++Y  DAN YF+RPG R+V+G+ +LA  IH
Sbjct:    1 MRICSFLPSTTEILYDLGLGNSVTGVTHECDYPPEAREKKRVIMSFIDPGKLSSREIDELVSRNAAEGKSTYLIDKDALKEADPDLILTQELCQVCAVSGNEVTEAVEALGKKPRIISLEPRTLSEIIDTILIIGEATGTGDRA----REITDKLVERIERVRSLLGNER--DRPRVFCMEWLDPPYVAGHWVPEMVEIAGGSCGIGKAGEPSFKVSWKEIADFAPQMLFIMPCGYDVEKTLCEIETVTKHDEWFSLPSTSKGQIYIFDANSYFSRPGPRVVDGLEILAKTIH 287          
BLAST of NO12G01130 vs. NCBI_GenBank
Match: OGQ78796.1 (hypothetical protein A3F90_15170 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19])

HSP 1 Score: 241.9 bits (616), Expect = 4.300e-60
Identity = 120/293 (40.96%), Postives = 179/293 (61.09%), Query Frame = 0
Query:  168 LRIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIH 461
            +RI S LP+ATE+ F+LGLGD + G+THECDYPPEAK+K VVV+  +D E L  ++IDE+V   ++  K +Y ++  + R A P  ++TQ+LC VC    +EV + +K L  PP IV   P    +VL     +G + GK+  A + V+    +++          SR       RV  +EW+DP+++ GHWV EM+E AGG D   +KGK S  + W+ V  + PEVI++ PCGFD+ ++  +   +  R G+  LPA K  RV+AV+ + YF RPG RLV+G+ +LA ++H
Sbjct:    1 MRICSLLPSATEIAFALGLGDEIVGVTHECDYPPEAKEKRVVVKSAIDSEKLASRDIDESVQRHVRERKGIYAIDLLRFRAANPDYIITQDLCDVCALDYHEVMEAVKWLTAPPKIVSLAPTRLADVLRDIERIGVSAGKQVAANELVRRLGERIEXXXXXXXXXXSRP------RVVCIEWLDPLYSAGHWVPEMVELAGGVDGLGKKGKPSEEIAWETVREFAPEVIVLMPCGFDVARTLRELPSVQDRPGWGKLPAVKAGRVFAVNGSAYFNRPGPRLVDGLEILAQIVH 287          
The following BLAST results are available for this feature:
BLAST of NO12G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25907.13.200e-14880.25periplasmic binding protein [Nannochloropsis gadit... [more]
WP_079566386.11.300e-8552.75cobalamin-binding protein [Bradyrhizobium erythrop... [more]
WP_072817977.14.800e-8350.81cobalamin-binding protein [Bradyrhizobium erythrop... [more]
OIO38651.17.900e-7848.22hypothetical protein AUJ72_02145 [Candidatus Omnit... [more]
WP_090571710.11.400e-7445.28cobalamin-binding protein [Nitrosomonas sp. Nm33] ... [more]
KRT62957.12.600e-6541.98periplasmic binding protein, iron complex transpor... [more]
GBD38425.12.900e-6442.66Vitamin B12-binding protein [bacterium HR37][more]
OLC72603.11.500e-6043.88hypothetical protein AUH87_01295, partial [Deltapr... [more]
OGE24557.12.000e-6040.96hypothetical protein A3J42_10440 [Candidatus Dadab... [more]
OGQ78796.14.300e-6040.96hypothetical protein A3F90_15170 [Deltaproteobacte... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010027NSK010027Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01130.1NO12G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591960gene_5268Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100048g9gene4610Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01130.1NO12G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01130 ID=NO12G01130|Name=NO12G01130|organism=Nannochloropsis oceanica|type=gene|length=2476bp
CGGGGTGGGAACAAGAACGAGGGGAGAGAGACGAGAGGTAGCGATTGAGG
ACGGATTCGGGCTAGCTGATGCTTTGAATTACTACAAAGTGCATGTCCAA
TTGCCCTGCATGACAAGACCCGACACGATTGAGGGATAGTGCGGAATTAA
AAGCGGGGGGCAGGAGGCGAAGAATTTGGGTTGGAATGAGGCCGCCCCAG
AGAAACGTTGGCAGCGACGCAGCAGCAACGCAGCAGCAACATGGCCGTGA
TCAGCACAGCAGCCCTTGGGAAAGTTTTAGCAACACCCCAAGCCCACCCC
GCACACCCACAGGCCCTTTCGTACAAGCATTTTTTAACCAGCTCGCCCTT
TGTGCAAATGTGCCGCGCCTTTCGAGCTCCTCCAACCCATCCACGCTCTT
TCATCGACCTCCCCTCTTTCTTTCAAGGGCATTTGCCAAGCATGCAGGCG
CCCGTCTTTTGTCAAAGATGGCCGAGCATGTGCTCCACACCCAGATGTAT
CCCAACTCACCATATATGTGGTTTGAATCTCACTGCGCTTTTGTCGGCCT
CCGGCTTGCATTCTAAGGCACTTGATTACGACTGCACACATTGTGGCAGG
GCCACTTACCCCAGCTCTACTCCCAGGCGCCTCACACTTCTTTACGCCCA
CACAATCCTCTATCACAAAGACAAAAAGGCACCCGCCACTATGACTGCCT
CTACTGCCGCTGCAACAGCTGCCACGGTAGCCACCCTGCCTTTACGCATT
GCCTCCTTTTTGCCCGCCGCGACCGAAATGCTTTTCAGTCTGGGCCTGGG
CGACTTGGTCTGTGGCATCACGCACGAATGCGACTACCCTCCCGAGgtaa
ggatcttgttttcctttctcctcttctgaagatcatggagtcaaagcgat
cacccctttattcatccacccctcactcctcaattcgtcccttaaccccc
aaaacagGCCAAACAAAAACCTGTCGTCGTCGAGTGCGTCCTGGATCTCG
AAGGTCTGACCATGAAAGAAATCGATGAAGCGGTTTCTGCTCGTCTCAAA
TCGGGCAAATCCCTTTACAACGTTAACGAGGACAAGCTCAGAATTGCGGC
GCCCACCTTGCTGGTCACGCAAAACCTTTGCCAGGTCTGCGGGCCTTCCG
GGAATGAAGTCACTCAGgtatgttttgcttgttattttggtctttatttt
tgtcgttcatgaatgtattcacttgatctgaccttataaattgacccaaa
gccagaatgtacttgggtgatcatgggtgaggacaaagagatctgccttt
cttccttaccgtttatgatgtaaggaggaggccaggaggccactgctgaa
agactaatcggcatccacatgtctcaatgtccccgacacctcccttcaat
caaaccttcacagGTCCTAAAAACTCTGAAGCCCCCTCCCACCATCGTGT
GGCAGACCCCCAAAACCTTCGAGGAAGTGCTATCTGCCTACCTGGAACTG
GGCCGCGCCACAGGCAAAGAAAAGGAGGCCGAGAAGTGGGTCCAGGAATC
AAGAGCGAAAGTAAAGGAGATCAGAGAGAATGTCCAGGCGGTGATGAGCA
GAAAAGAAGGGGGAAAGGCGGTGCGTGTGGCATTCGTGGAGTGGATCGAT
CCGATCTTCGCGGGGGGTCATTGGGTGGGTGAGATGTTGGAATGGGCCGG
TGGAGACGACGCCAACAGCAGGAAAGGCAAGGATTCGGTTCGTGTGCCTT
GGGATGATGTGCTGGCATGGCAGCCGGAGGTCATCATCGTCTCTCCCTGT
GGGTTTGACTTGAAGAAAAGCACGGAGCAGGCAAAGTTGTTGATGAAGAG
GGATGGGTTCATGGATTTACCAGCGGCGAAGCAAGATCGCGTGTATGCGG
TCGATGCCAATGGCTACTTTGCGAGGCCGGGGATTCGACTGGTGGAAGGG
GTGTTGCTGCTCGCGCATATGATTCATGGTGGGGAGAACTTTCCGTGGAC
GGGAGCGGAAGATGCGTTTGCGCGGGTGCCGGTTGAAGGGGAGGAAGGGA
GGGGGGAAACAAAGGAGGAGAAGGAAAATGGGAAGGGTAGAGGAGAGGAG
GTGGAGATGAAGATTAACGAGGCGTGAGCCCACAGAGAGCAGACTTTTCC
GGGATGTCAAAATAATGGTGAGGAGATTTGAAATCGAAGGACTTAGAAGA
GGAAGCAGAGGGTGAGTATAATGCCCCAGGCAGGTGGAGTGCTGTCTAAG
TTCCGTCTCCGTCGCCATCATTGAATTGATAAACCTGAATAATTGAGCAT
ACAATTACAACAGATATGCCGGAAGACATGAAGAAACATAAAAAGAATGG
GACCGAGAAAACTGTGCGATTTTTTTTTGGGACAGACGAGAAAAGAGGGA
CGAGCTGAGTGTTATCGATTTGATCGCCTGCGTTTGTGTGAATGATTGAA
AGGATAGTGGGTGGATTCAAATATTT
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protein sequence of NO12G01130.1

>NO12G01130.1-protein ID=NO12G01130.1-protein|Name=NO12G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MAVISTAALGKVLATPQAHPAHPQALSYKHFLTSSPFVQMCRAFRAPPTH
PRSFIDLPSFFQGHLPSMQAPVFCQRWPSMCSTPRCIPTHHICGLNLTAL
LSASGLHSKALDYDCTHCGRATYPSSTPRRLTLLYAHTILYHKDKKAPAT
MTASTAAATAATVATLPLRIASFLPAATEMLFSLGLGDLVCGITHECDYP
PEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAA
PTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLE
LGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWI
DPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSP
CGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVE
GVLLLAHMIHGGENFPWTGAEDAFARVPVEGEEGRGETKEEKENGKGRGE
EVEMKINEA*
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Synonyms
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