NO12G01130.1, NO12G01130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G01130.1
Unique Name	NO12G01130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2119
Alignment location	chr12:355997..358472 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:355997..358472 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO12G01130.1 vs.
Match: EWM25907.1 (periplasmic binding protein [Nannochloropsis gaditana])

HSP 1 Score: 536.2 bits (1380), Expect = 1.100e-148
Identity = 267/343 (77.84%), Postives = 299/343 (87.17%), Query Frame = 0

Query:  151 MTASTAAATAATVATLPLRIASFLPAATEMLFSLGLGDLVCGITHECDYPPEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLELGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWIDPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSPCGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVEGVLLLAHMIHGGENFPWTGAEDAFARVPVEGEEGRGETKEEKE 494
            MT  + A+ AA+  T PLRIASFLPAATEMLFSLGLGD V GITHECDYPPEAK+KPVVVECVL+LEGL+MKEIDEAVSARLKSGKSLYNVNE+KLR AAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPP IVWQTPKTFEEVL AYLELG+ TGKE+E++ WV+ SR +V +IR  VQ  +  +     VRVAFVEWIDPIFAGGHWVGEMLEWAGG+D NSRKG+DSVR+PW++V+AW PEVIIVSPCGFDL+KS EQA+LLM+R+GF  LPAAK DRVYAVDANGYFARPGIRLV+G+LLLAH+IHG ++FPWTG  DAFA VPVEGE G  E +E  E
Sbjct:    1 MTECSVASAAASADTRPLRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAFAHVPVEGEGGGREAEETGE 343

The following BLAST results are available for this feature:

BLAST of NO12G01130.1 vs.

BLAST of NO12G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25907.1	1.100e-148	77.84	periplasmic binding protein [Nannochloropsis gadit...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G01130	NO12G01130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G01130.1	NO12G01130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G01130.1.cds1	NO12G01130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01130.1.cds2	NO12G01130.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01130.1.cds3	NO12G01130.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:355997..358472-
coding sequence from alignment at chr12:355997..358472-

mRNA sequence

>NO12G01130.1 ID=NO12G01130.1|Name=NO12G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2119bp
CGGGGTGGGAACAAGAACGAGGGGAGAGAGACGAGAGGTAGCGATTGAGG
ACGGATTCGGGCTAGCTGATGCTTTGAATTACTACAAAGTGCATGTCCAA
TTGCCCTGCATGACAAGACCCGACACGATTGAGGGATAGTGCGGAATTAA
AAGCGGGGGGCAGGAGGCGAAGAATTTGGGTTGGAATGAGGCCGCCCCAG
AGAAACGTTGGCAGCGACGCAGCAGCAACGCAGCAGCAACATGGCCGTGA
TCAGCACAGCAGCCCTTGGGAAAGTTTTAGCAACACCCCAAGCCCACCCC
GCACACCCACAGGCCCTTTCGTACAAGCATTTTTTAACCAGCTCGCCCTT
TGTGCAAATGTGCCGCGCCTTTCGAGCTCCTCCAACCCATCCACGCTCTT
TCATCGACCTCCCCTCTTTCTTTCAAGGGCATTTGCCAAGCATGCAGGCG
CCCGTCTTTTGTCAAAGATGGCCGAGCATGTGCTCCACACCCAGATGTAT
CCCAACTCACCATATATGTGGTTTGAATCTCACTGCGCTTTTGTCGGCCT
CCGGCTTGCATTCTAAGGCACTTGATTACGACTGCACACATTGTGGCAGG
GCCACTTACCCCAGCTCTACTCCCAGGCGCCTCACACTTCTTTACGCCCA
CACAATCCTCTATCACAAAGACAAAAAGGCACCCGCCACTATGACTGCCT
CTACTGCCGCTGCAACAGCTGCCACGGTAGCCACCCTGCCTTTACGCATT
GCCTCCTTTTTGCCCGCCGCGACCGAAATGCTTTTCAGTCTGGGCCTGGG
CGACTTGGTCTGTGGCATCACGCACGAATGCGACTACCCTCCCGAGGCCA
AACAAAAACCTGTCGTCGTCGAGTGCGTCCTGGATCTCGAAGGTCTGACC
ATGAAAGAAATCGATGAAGCGGTTTCTGCTCGTCTCAAATCGGGCAAATC
CCTTTACAACGTTAACGAGGACAAGCTCAGAATTGCGGCGCCCACCTTGC
TGGTCACGCAAAACCTTTGCCAGGTCTGCGGGCCTTCCGGGAATGAAGTC
ACTCAGGTCCTAAAAACTCTGAAGCCCCCTCCCACCATCGTGTGGCAGAC
CCCCAAAACCTTCGAGGAAGTGCTATCTGCCTACCTGGAACTGGGCCGCG
CCACAGGCAAAGAAAAGGAGGCCGAGAAGTGGGTCCAGGAATCAAGAGCG
AAAGTAAAGGAGATCAGAGAGAATGTCCAGGCGGTGATGAGCAGAAAAGA
AGGGGGAAAGGCGGTGCGTGTGGCATTCGTGGAGTGGATCGATCCGATCT
TCGCGGGGGGTCATTGGGTGGGTGAGATGTTGGAATGGGCCGGTGGAGAC
GACGCCAACAGCAGGAAAGGCAAGGATTCGGTTCGTGTGCCTTGGGATGA
TGTGCTGGCATGGCAGCCGGAGGTCATCATCGTCTCTCCCTGTGGGTTTG
ACTTGAAGAAAAGCACGGAGCAGGCAAAGTTGTTGATGAAGAGGGATGGG
TTCATGGATTTACCAGCGGCGAAGCAAGATCGCGTGTATGCGGTCGATGC
CAATGGCTACTTTGCGAGGCCGGGGATTCGACTGGTGGAAGGGGTGTTGC
TGCTCGCGCATATGATTCATGGTGGGGAGAACTTTCCGTGGACGGGAGCG
GAAGATGCGTTTGCGCGGGTGCCGGTTGAAGGGGAGGAAGGGAGGGGGGA
AACAAAGGAGGAGAAGGAAAATGGGAAGGGTAGAGGAGAGGAGGTGGAGA
TGAAGATTAACGAGGCGTGAGCCCACAGAGAGCAGACTTTTCCGGGATGT
CAAAATAATGGTGAGGAGATTTGAAATCGAAGGACTTAGAAGAGGAAGCA
GAGGGTGAGTATAATGCCCCAGGCAGGTGGAGTGCTGTCTAAGTTCCGTC
TCCGTCGCCATCATTGAATTGATAAACCTGAATAATTGAGCATACAATTA
CAACAGATATGCCGGAAGACATGAAGAAACATAAAAAGAATGGGACCGAG
AAAACTGTGCGATTTTTTTTTGGGACAGACGAGAAAAGAGGGACGAGCTG
AGTGTTATCGATTTGATCGCCTGCGTTTGTGTGAATGATTGAAAGGATAG
TGGGTGGATTCAAATATTT

protein sequence of NO12G01130.1

>NO12G01130.1-protein ID=NO12G01130.1-protein|Name=NO12G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MAVISTAALGKVLATPQAHPAHPQALSYKHFLTSSPFVQMCRAFRAPPTH
PRSFIDLPSFFQGHLPSMQAPVFCQRWPSMCSTPRCIPTHHICGLNLTAL
LSASGLHSKALDYDCTHCGRATYPSSTPRRLTLLYAHTILYHKDKKAPAT
MTASTAAATAATVATLPLRIASFLPAATEMLFSLGLGDLVCGITHECDYP
PEAKQKPVVVECVLDLEGLTMKEIDEAVSARLKSGKSLYNVNEDKLRIAA
PTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPTIVWQTPKTFEEVLSAYLE
LGRATGKEKEAEKWVQESRAKVKEIRENVQAVMSRKEGGKAVRVAFVEWI
DPIFAGGHWVGEMLEWAGGDDANSRKGKDSVRVPWDDVLAWQPEVIIVSP
CGFDLKKSTEQAKLLMKRDGFMDLPAAKQDRVYAVDANGYFARPGIRLVE
GVLLLAHMIHGGENFPWTGAEDAFARVPVEGEEGRGETKEEKENGKGRGE
EVEMKINEA*

mRNA from alignment at chr12:355997..358472-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G01130.1 ID=NO12G01130.1|Name=NO12G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp|location=Sequence derived from alignment at chr12:355997..358472- (Nannochloropsis oceanica)
CGGGGTGGGAACAAGAACGAGGGGAGAGAGACGAGAGGTAGCGATTGAGG
ACGGATTCGGGCTAGCTGATGCTTTGAATTACTACAAAGTGCATGTCCAA
TTGCCCTGCATGACAAGACCCGACACGATTGAGGGATAGTGCGGAATTAA
AAGCGGGGGGCAGGAGGCGAAGAATTTGGGTTGGAATGAGGCCGCCCCAG
AGAAACGTTGGCAGCGACGCAGCAGCAACGCAGCAGCAACATGGCCGTGA
TCAGCACAGCAGCCCTTGGGAAAGTTTTAGCAACACCCCAAGCCCACCCC
GCACACCCACAGGCCCTTTCGTACAAGCATTTTTTAACCAGCTCGCCCTT
TGTGCAAATGTGCCGCGCCTTTCGAGCTCCTCCAACCCATCCACGCTCTT
TCATCGACCTCCCCTCTTTCTTTCAAGGGCATTTGCCAAGCATGCAGGCG
CCCGTCTTTTGTCAAAGATGGCCGAGCATGTGCTCCACACCCAGATGTAT
CCCAACTCACCATATATGTGGTTTGAATCTCACTGCGCTTTTGTCGGCCT
CCGGCTTGCATTCTAAGGCACTTGATTACGACTGCACACATTGTGGCAGG
GCCACTTACCCCAGCTCTACTCCCAGGCGCCTCACACTTCTTTACGCCCA
CACAATCCTCTATCACAAAGACAAAAAGGCACCCGCCACTATGACTGCCT
CTACTGCCGCTGCAACAGCTGCCACGGTAGCCACCCTGCCTTTACGCATT
GCCTCCTTTTTGCCCGCCGCGACCGAAATGCTTTTCAGTCTGGGCCTGGG
CGACTTGGTCTGTGGCATCACGCACGAATGCGACTACCCTCCCGAGGTAA
GGATCTTGTTTTCCTTTCTCCTCTTCTGAAGATCATGGAGTCAAAGCGAT
CACCCCTTTATTCATCCACCCCTCACTCCTCAATTCGTCCCTTAACCCCC
AAAACAGGCCAAACAAAAACCTGTCGTCGTCGAGTGCGTCCTGGATCTCG
AAGGTCTGACCATGAAAGAAATCGATGAAGCGGTTTCTGCTCGTCTCAAA
TCGGGCAAATCCCTTTACAACGTTAACGAGGACAAGCTCAGAATTGCGGC
GCCCACCTTGCTGGTCACGCAAAACCTTTGCCAGGTCTGCGGGCCTTCCG
GGAATGAAGTCACTCAGGTATGTTTTGCTTGTTATTTTGGTCTTTATTTT
TGTCGTTCATGAATGTATTCACTTGATCTGACCTTATAAATTGACCCAAA
GCCAGAATGTACTTGGGTGATCATGGGTGAGGACAAAGAGATCTGCCTTT
CTTCCTTACCGTTTATGATGTAAGGAGGAGGCCAGGAGGCCACTGCTGAA
AGACTAATCGGCATCCACATGTCTCAATGTCCCCGACACCTCCCTTCAAT
CAAACCTTCACAGGTCCTAAAAACTCTGAAGCCCCCTCCCACCATCGTGT
GGCAGACCCCCAAAACCTTCGAGGAAGTGCTATCTGCCTACCTGGAACTG
GGCCGCGCCACAGGCAAAGAAAAGGAGGCCGAGAAGTGGGTCCAGGAATC
AAGAGCGAAAGTAAAGGAGATCAGAGAGAATGTCCAGGCGGTGATGAGCA
GAAAAGAAGGGGGAAAGGCGGTGCGTGTGGCATTCGTGGAGTGGATCGAT
CCGATCTTCGCGGGGGGTCATTGGGTGGGTGAGATGTTGGAATGGGCCGG
TGGAGACGACGCCAACAGCAGGAAAGGCAAGGATTCGGTTCGTGTGCCTT
GGGATGATGTGCTGGCATGGCAGCCGGAGGTCATCATCGTCTCTCCCTGT
GGGTTTGACTTGAAGAAAAGCACGGAGCAGGCAAAGTTGTTGATGAAGAG
GGATGGGTTCATGGATTTACCAGCGGCGAAGCAAGATCGCGTGTATGCGG
TCGATGCCAATGGCTACTTTGCGAGGCCGGGGATTCGACTGGTGGAAGGG
GTGTTGCTGCTCGCGCATATGATTCATGGTGGGGAGAACTTTCCGTGGAC
GGGAGCGGAAGATGCGTTTGCGCGGGTGCCGGTTGAAGGGGAGGAAGGGA
GGGGGGAAACAAAGGAGGAGAAGGAAAATGGGAAGGGTAGAGGAGAGGAG
GTGGAGATGAAGATTAACGAGGCGTGAGCCCACAGAGAGCAGACTTTTCC
GGGATGTCAAAATAATGGTGAGGAGATTTGAAATCGAAGGACTTAGAAGA
GGAAGCAGAGGGTGAGTATAATGCCCCAGGCAGGTGGAGTGCTGTCTAAG
TTCCGTCTCCGTCGCCATCATTGAATTGATAAACCTGAATAATTGAGCAT
ACAATTACAACAGATATGCCGGAAGACATGAAGAAACATAAAAAGAATGG
GACCGAGAAAACTGTGCGATTTTTTTTTGGGACAGACGAGAAAAGAGGGA
CGAGCTGAGTGTTATCGATTTGATCGCCTGCGTTTGTGTGAATGATTGAA
AGGATAGTGGGTGGATTCAAATATTT

Coding sequence (CDS) from alignment at chr12:355997..358472-

>NO12G01130.1 ID=NO12G01130.1|Name=NO12G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at chr12:355997..358472- (Nannochloropsis oceanica)
ATGGCCGTGATCAGCACAGCAGCCCTTGGGAAAGTTTTAGCAACACCCCA
AGCCCACCCCGCACACCCACAGGCCCTTTCGTACAAGCATTTTTTAACCA
GCTCGCCCTTTGTGCAAATGTGCCGCGCCTTTCGAGCTCCTCCAACCCAT
CCACGCTCTTTCATCGACCTCCCCTCTTTCTTTCAAGGGCATTTGCCAAG
CATGCAGGCGCCCGTCTTTTGTCAAAGATGGCCGAGCATGTGCTCCACAC
CCAGATGTATCCCAACTCACCATATATGTGGTTTGAATCTCACTGCGCTT
TTGTCGGCCTCCGGCTTGCATTCTAAGGCACTTGATTACGACTGCACACA
TTGTGGCAGGGCCACTTACCCCAGCTCTACTCCCAGGCGCCTCACACTTC
TTTACGCCCACACAATCCTCTATCACAAAGACAAAAAGGCACCCGCCACT
ATGACTGCCTCTACTGCCGCTGCAACAGCTGCCACGGTAGCCACCCTGCC
TTTACGCATTGCCTCCTTTTTGCCCGCCGCGACCGAAATGCTTTTCAGTC
TGGGCCTGGGCGACTTGGTCTGTGGCATCACGCACGAATGCGACTACCCT
CCCGAGGCCAAACAAAAACCTGTCGTCGTCGAGTGCGTCCTGGATCTCGA
AGGTCTGACCATGAAAGAAATCGATGAAGCGGTTTCTGCTCGTCTCAAAT
CGGGCAAATCCCTTTACAACGTTAACGAGGACAAGCTCAGAATTGCGGCG
CCCACCTTGCTGGTCACGCAAAACCTTTGCCAGGTCTGCGGGCCTTCCGG
GAATGAAGTCACTCAGGTCCTAAAAACTCTGAAGCCCCCTCCCACCATCG
TGTGGCAGACCCCCAAAACCTTCGAGGAAGTGCTATCTGCCTACCTGGAA
CTGGGCCGCGCCACAGGCAAAGAAAAGGAGGCCGAGAAGTGGGTCCAGGA
ATCAAGAGCGAAAGTAAAGGAGATCAGAGAGAATGTCCAGGCGGTGATGA
GCAGAAAAGAAGGGGGAAAGGCGGTGCGTGTGGCATTCGTGGAGTGGATC
GATCCGATCTTCGCGGGGGGTCATTGGGTGGGTGAGATGTTGGAATGGGC
CGGTGGAGACGACGCCAACAGCAGGAAAGGCAAGGATTCGGTTCGTGTGC
CTTGGGATGATGTGCTGGCATGGCAGCCGGAGGTCATCATCGTCTCTCCC
TGTGGGTTTGACTTGAAGAAAAGCACGGAGCAGGCAAAGTTGTTGATGAA
GAGGGATGGGTTCATGGATTTACCAGCGGCGAAGCAAGATCGCGTGTATG
CGGTCGATGCCAATGGCTACTTTGCGAGGCCGGGGATTCGACTGGTGGAA
GGGGTGTTGCTGCTCGCGCATATGATTCATGGTGGGGAGAACTTTCCGTG
GACGGGAGCGGAAGATGCGTTTGCGCGGGTGCCGGTTGAAGGGGAGGAAG
GGAGGGGGGAAACAAAGGAGGAGAAGGAAAATGGGAAGGGTAGAGGAGAG
GAGGTGGAGATGAAGATTAACGAGGCGTGA

Synonyms

Publications