NO12G01050, NO12G01050 (gene) Nannochloropsis oceanica

Overview
NameNO12G01050
Unique NameNO12G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length671
Alignment locationchr12:333045..333715 -

Link to JBrowse

Properties
Property NameValue
DescriptionPhosphatidylglycerol/phosphatidylinositol transfer protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:333045..333715 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR003172ML_dom
Vocabulary: Biological Process
TermDefinition
GO:0032366intracellular sterol transport
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
BLAST of NO12G01050 vs. NCBI_GenBank
Match: KLU81398.1 (phosphatidylglycerol/phosphatidylinositol transfer protein [Magnaporthiopsis poae ATCC 64411])

HSP 1 Score: 73.9 bits (180), Expect = 5.700e-10
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 0
Query:   28 PFRVC---HDQDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            P R+C   H  D L + ++DL+P P  AGQ L I   G+   TIE+G  V LS+K   +   S   DLC  L + ++ CPI  G  S ++ V D+P   PPG  T     +N   K+++C+ + V
Sbjct:   36 PLRLCDGDHGDDLLRITKVDLSPNPPQAGQTLVIEANGVLSSTIEKGAYVDLSVKYGLIRLISTRADLCEQLENVDLKCPIENGKLSISKSV-DLPNEIPPGTYTVFADVYNVDAKKITCLTATV 159          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: XP_009220124.1 (phosphatidylglycerol/phosphatidylinositol transfer protein [Gaeumannomyces tritici R3-111a-1] >EJT78979.1 phosphatidylglycerol/phosphatidylinositol transfer protein [Gaeumannomyces tritici R3-111a-1])

HSP 1 Score: 73.6 bits (179), Expect = 7.500e-10
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 0
Query:   28 PFRVC---HDQDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            P R+C   H  D L + ++DL P P  AGQ L I   G    TIE+G  V+LS+K   +   +   DLC  + +  + CPI  G  S A+ V D+P   PPG  T     + K  K+++C+ + V
Sbjct:   36 PLRLCDGDHGDDLLQITKVDLNPNPPKAGQTLVIEANGALSTTIEEGAYVNLSVKYGLIRLINTKADLCEQIKNVNLECPIEKGILSIAKSV-DLPNEIPPGTYTVFADVYTKDDKKITCLTATV 159          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: OIW32248.1 (ML domain-containing protein [Coniochaeta ligniaria NRRL 30616])

HSP 1 Score: 72.0 bits (175), Expect = 2.200e-9
Identity = 42/125 (33.60%), Postives = 64/125 (51.20%), Query Frame = 0
Query:   28 PFRVC---HDQDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            P + C    D D + ++ +DL+P P  AG  L I   G    TIE G  V+L +K   +   +   DLC  + + ++ CPI  G  S  + V D+P+  PPG+ T     F K GK ++C+ +QV
Sbjct:   41 PLQYCDEKRDDDIIRIESVDLSPNPPEAGTELVIKAVGTVYETIEDGAYVNLQVKYGLIRLVNTKADLCEQIKNVDLECPIEKGIISITKSV-DLPKEIPPGKYTVNADVFTKDGKHITCLTAQV 164          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: OQO23544.1 (hypothetical protein B0A51_10932 [Rachicladosporium sp. CCFEE 5018])

HSP 1 Score: 70.1 bits (170), Expect = 8.300e-9
Identity = 37/129 (28.68%), Postives = 66/129 (51.16%), Query Frame = 0
Query:   36 DALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQVDVVCPSAAVVPGARL 164
            D L +  +DL P P  AG  L +  +G     +E+G +VHL +K   +     + DLC  + + ++ CP+  GTT  ++ + ++P   PPG+ T       K GK+++C+ + V      + +V G+ L
Sbjct:   52 DLLDIKTVDLNPNPPTAGTTLKVTAKGYLSEDVEEGAKVHLQVKYGLITIIKQDADLCEQVKNVDLECPVKKGTTELSKDI-ELPSQIPPGKYTVLADVVTKDGKKITCLTATVQFSRGGSGLVTGSWL 179          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: OAA41117.1 (phosphatidylglycerol / phosphatidylinositol transfer protein [Cordyceps brongniartii RCEF 3172])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 0
Query:    1 MHFSAFPAILSLLVVVSVTTIITATTVPFRVC---HDQDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            M FS+   +LSL +  +++  I   + P  +C   H  D + ++ +DLTP P  AGQ L I   G  + TIEQG  V L++K   +   + N DLC  + + ++ CP+ AG  +  + V  +P   PPG+ T     +N     ++C+ + V
Sbjct:    1 MKFSSALGLLSLCLAPALSAKIPGDS-PLELCDGDHSDDLITINNVDLTPNPPKAGQDLLIEASGTVKETIEQGAYVKLTVKYGLITLLTTNADLCEQIGNVDLKCPVTAGDQTIEKIV-KLPVEIPPGKYTVRADVYNADDTPITCLTATV 150          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: OCK81889.1 (hypothetical protein K432DRAFT_424571 [Lepidopterella palustris CBS 459.81])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 0
Query:   28 PFRVCHD--QDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            P   C D   D L +D +DL P P  AG+ L+I  +G     IE+G +VHL +K   +   +   DLC  + + ++ CP+  G  +  + V D+P+  PPG        F K G +++C+ + +
Sbjct:   42 PLYFCSDPSDDILIIDNVDLDPNPPKAGESLDIVAKGTLSKAIEEGAKVHLQVKYGLITLINQEADLCDQVKNVDLECPLHKGDMTLMKSV-DLPKEIPPGNYQVLADVFTKDGDKITCLTASI 164          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: OQO02664.1 (hypothetical protein B0A48_12193 [Rachicladosporium antarcticum])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 37/129 (28.68%), Postives = 65/129 (50.39%), Query Frame = 0
Query:   36 DALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQVDVVCPSAAVVPGARL 164
            D L +  +DL P P  AG  L +  +G     +E+G +VHL +K   +     + DLC  + + ++ CP+  GTT  ++ + ++P   PPG+ T       K GK+++C+ + V      +  V G+ L
Sbjct:   51 DLLDIKTVDLNPNPPTAGTTLKVTAKGYLSEDVEEGAKVHLQVKYGLITIIKQDADLCEQVKNVDLECPVKKGTTELSKDI-ELPSQIPPGKYTVLADVVTKDGKKITCLSATVQFSRGGSGAVTGSWL 178          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: PSN69338.1 (phosphatidylglycerol/phosphatidylinositol transfer protein precursor [Corynespora cassiicola Philippines])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 36/124 (29.03%), Postives = 67/124 (54.03%), Query Frame = 0
Query:   28 PFRVCHD--QDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            P   C D   + L ++++DL+P P   G+ L I   G     +E+G ++HL +K   +   + + DLC ++   ++ CP+  G  S  + V D+P+  PPGR +     ++K G +++C+ SQ+
Sbjct:   18 PLYFCEDPANNILTIEKVDLSPNPPEPGKTLTIKATGKFNEVVEEGSKMHLQVKYGLITLINQDADLCETIQKADLSCPLEKGEMSLTKDV-DLPKEIPPGRYSVLADVYSKDGDKITCLKSQI 140          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: EFQ92631.1 (hypothetical protein PTT_10238 [Pyrenophora teres f. teres 0-1])

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8
Identity = 37/124 (29.84%), Postives = 66/124 (53.23%), Query Frame = 0
Query:   28 PFRVCHD--QDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASL-IDEVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            P   C D   D L ++++DL+P P + GQ L+I   G  +  + +GF++HL +K   +   + N D C ++   ++ CP+  G  S  + V D+PR  PPG  T     F   G +++C+ +++
Sbjct:  151 PLYFCGDPANDILKIEKVDLSPNPPVPGQSLSIKATGDFKDEVGEGFKMHLQVKYGLITLINQNADGCDTIKKGDLDCPLEKGEMSLTKDV-DLPREIPPGTYTVLADVFTADGDKITCLTAKI 273          
BLAST of NO12G01050 vs. NCBI_GenBank
Match: OAA68401.1 (ml domain containing protein [Sporothrix insectorum RCEF 264])

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8
Identity = 42/125 (33.60%), Postives = 62/125 (49.60%), Query Frame = 0
Query:   28 PFRVC---HDQDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            P   C   H  D L +  ++L+P P  AG  L I   G+   TIEQG  V+L +K   +   S   DLC  + + E+ CPI  G  S  + + D+PR  PPG+ T     F   G+ ++C+ + V
Sbjct:   40 PLEFCPKDHTDDLLTIQSVNLSPNPPEAGTELVIEATGVVAETIEQGAYVNLQVKYGLIRLISTTADLCEQIQNVELECPIEKGPISIVKSI-DLPREIPPGKYTVLADVFTAKGEPITCLTATV 163          
The following BLAST results are available for this feature:
BLAST of NO12G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KLU81398.15.700e-1036.00phosphatidylglycerol/phosphatidylinositol transfer... [more]
XP_009220124.17.500e-1035.20phosphatidylglycerol/phosphatidylinositol transfer... [more]
OIW32248.12.200e-933.60ML domain-containing protein [Coniochaeta ligniari... [more]
OQO23544.18.300e-928.68hypothetical protein B0A51_10932 [Rachicladosporiu... [more]
OAA41117.11.100e-830.92phosphatidylglycerol / phosphatidylinositol transf... [more]
OCK81889.11.100e-830.65hypothetical protein K432DRAFT_424571 [Lepidoptere... [more]
OQO02664.11.100e-828.68hypothetical protein B0A48_12193 [Rachicladosporiu... [more]
PSN69338.11.100e-829.03phosphatidylglycerol/phosphatidylinositol transfer... [more]
EFQ92631.11.400e-829.84hypothetical protein PTT_10238 [Pyrenophora teres ... [more]
OAA68401.11.400e-833.60ml domain containing protein [Sporothrix insectoru... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01050.1NO12G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648301gene_5258Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100048g2gene4604Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01050.1NO12G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01050 ID=NO12G01050|Name=NO12G01050|organism=Nannochloropsis oceanica|type=gene|length=671bp
ATTCCTTTCGATGCCGGGCATGCTTTATCATGATATGTATCGGAGTATGG
TAGTTTTGATCACCCAATCCCCATACAGAAGCCAGCGTCCCACACCTCCC
TATCCTAGCCATGCACTTCTCCGCCTTCCCTGCCATTTTGAGTCTCCTCG
TCGTTGTCTCGGTTACCACCATCATTACCGCCACCACTGTCCCTTTCCGC
GTCTGCCATGATCAGGATGCATTGGGCGTGGACCGCATCGATTTAACTCC
CATTCCCGCGATAGCTGGTCAGCCCTTGAACATTTTTGTGGAAGGCATGA
CAGAAATTACCATTGAGCAAGGGTTCCGGGTGCACTTGTCGATCAAGCTG
AAAAATTTGCCAGCGCCCTCCATGAATTATGACCTTTGTGCATCGCTGAT
TGATGAGGTACATTGCCCCATCCCAGCTGGTACCACTTCGCAGGCTCGTT
TTGTCTATGACGTGCCTCGCGTGTCGCCGCCGGGACGCGCCACCACAACT
GTCACGACCTTTAATAAGTCCGGAAAGGAAGTGAGTTGTATAATGTCTCA
AGTCGATGTAGTATGTCCTTCAGCAGCGGTGGTACCAGGGGCACGGTTGG
TGACCAAGCCGCTGCGTGCCCAGCCGTCCGAGAAGAACGAGGGGGAGGAC
GAGCCGAATATGTGGACTTGA
back to top

protein sequence of NO12G01050.1

>NO12G01050.1-protein ID=NO12G01050.1-protein|Name=NO12G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MHFSAFPAILSLLVVVSVTTIITATTVPFRVCHDQDALGVDRIDLTPIPA
IAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLIDEV
HCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQVDV
VCPSAAVVPGARLVTKPLRAQPSEKNEGEDEPNMWT*
back to top
Synonyms
Publications