NO12G01050.1, NO12G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01050.1
Unique NameNO12G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length671
Alignment locationchr12:333045..333715 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:333045..333715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01050.1 vs.
Match: KLU81398.1 (phosphatidylglycerol/phosphatidylinositol transfer protein [Magnaporthiopsis poae ATCC 64411])

HSP 1 Score: 73.9 bits (180), Expect = 5.700e-10
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 0 
Query:   28 PFRVC---HDQDALGVDRIDLTPIPAIAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLID-EVHCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQV 149
            P R+C   H  D L + ++DL+P P  AGQ L I   G+   TIE+G  V LS+K   +   S   DLC  L + ++ CPI  G  S ++ V D+P   PPG  T     +N   K+++C+ + V
Sbjct:   36 PLRLCDGDHGDDLLRITKVDLSPNPPQAGQTLVIEANGVLSSTIEKGAYVDLSVKYGLIRLISTRADLCEQLENVDLKCPIENGKLSISKSV-DLPNEIPPGTYTVFADVYNVDAKKITCLTATV 159
The following BLAST results are available for this feature:
BLAST of NO12G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KLU81398.15.700e-1036.00phosphatidylglycerol/phosphatidylinositol transfer... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01050NO12G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01050.1NO12G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01050.1.cds1NO12G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01050.1 ID=NO12G01050.1|Name=NO12G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=671bp
ATTCCTTTCGATGCCGGGCATGCTTTATCATGATATGTATCGGAGTATGG
TAGTTTTGATCACCCAATCCCCATACAGAAGCCAGCGTCCCACACCTCCC
TATCCTAGCCATGCACTTCTCCGCCTTCCCTGCCATTTTGAGTCTCCTCG
TCGTTGTCTCGGTTACCACCATCATTACCGCCACCACTGTCCCTTTCCGC
GTCTGCCATGATCAGGATGCATTGGGCGTGGACCGCATCGATTTAACTCC
CATTCCCGCGATAGCTGGTCAGCCCTTGAACATTTTTGTGGAAGGCATGA
CAGAAATTACCATTGAGCAAGGGTTCCGGGTGCACTTGTCGATCAAGCTG
AAAAATTTGCCAGCGCCCTCCATGAATTATGACCTTTGTGCATCGCTGAT
TGATGAGGTACATTGCCCCATCCCAGCTGGTACCACTTCGCAGGCTCGTT
TTGTCTATGACGTGCCTCGCGTGTCGCCGCCGGGACGCGCCACCACAACT
GTCACGACCTTTAATAAGTCCGGAAAGGAAGTGAGTTGTATAATGTCTCA
AGTCGATGTAGTATGTCCTTCAGCAGCGGTGGTACCAGGGGCACGGTTGG
TGACCAAGCCGCTGCGTGCCCAGCCGTCCGAGAAGAACGAGGGGGAGGAC
GAGCCGAATATGTGGACTTGA
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protein sequence of NO12G01050.1

>NO12G01050.1-protein ID=NO12G01050.1-protein|Name=NO12G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MHFSAFPAILSLLVVVSVTTIITATTVPFRVCHDQDALGVDRIDLTPIPA
IAGQPLNIFVEGMTEITIEQGFRVHLSIKLKNLPAPSMNYDLCASLIDEV
HCPIPAGTTSQARFVYDVPRVSPPGRATTTVTTFNKSGKEVSCIMSQVDV
VCPSAAVVPGARLVTKPLRAQPSEKNEGEDEPNMWT*
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mRNA from alignment at chr12:333045..333715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01050.1 ID=NO12G01050.1|Name=NO12G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=671bp|location=Sequence derived from alignment at chr12:333045..333715- (Nannochloropsis oceanica)
ATTCCTTTCGATGCCGGGCATGCTTTATCATGATATGTATCGGAGTATGG
TAGTTTTGATCACCCAATCCCCATACAGAAGCCAGCGTCCCACACCTCCC
TATCCTAGCCATGCACTTCTCCGCCTTCCCTGCCATTTTGAGTCTCCTCG
TCGTTGTCTCGGTTACCACCATCATTACCGCCACCACTGTCCCTTTCCGC
GTCTGCCATGATCAGGATGCATTGGGCGTGGACCGCATCGATTTAACTCC
CATTCCCGCGATAGCTGGTCAGCCCTTGAACATTTTTGTGGAAGGCATGA
CAGAAATTACCATTGAGCAAGGGTTCCGGGTGCACTTGTCGATCAAGCTG
AAAAATTTGCCAGCGCCCTCCATGAATTATGACCTTTGTGCATCGCTGAT
TGATGAGGTACATTGCCCCATCCCAGCTGGTACCACTTCGCAGGCTCGTT
TTGTCTATGACGTGCCTCGCGTGTCGCCGCCGGGACGCGCCACCACAACT
GTCACGACCTTTAATAAGTCCGGAAAGGAAGTGAGTTGTATAATGTCTCA
AGTCGATGTAGTATGTCCTTCAGCAGCGGTGGTACCAGGGGCACGGTTGG
TGACCAAGCCGCTGCGTGCCCAGCCGTCCGAGAAGAACGAGGGGGAGGAC
GAGCCGAATATGTGGACTTGA
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Coding sequence (CDS) from alignment at chr12:333045..333715-

>NO12G01050.1 ID=NO12G01050.1|Name=NO12G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr12:333045..333715- (Nannochloropsis oceanica)
ATGCACTTCTCCGCCTTCCCTGCCATTTTGAGTCTCCTCGTCGTTGTCTC
GGTTACCACCATCATTACCGCCACCACTGTCCCTTTCCGCGTCTGCCATG
ATCAGGATGCATTGGGCGTGGACCGCATCGATTTAACTCCCATTCCCGCG
ATAGCTGGTCAGCCCTTGAACATTTTTGTGGAAGGCATGACAGAAATTAC
CATTGAGCAAGGGTTCCGGGTGCACTTGTCGATCAAGCTGAAAAATTTGC
CAGCGCCCTCCATGAATTATGACCTTTGTGCATCGCTGATTGATGAGGTA
CATTGCCCCATCCCAGCTGGTACCACTTCGCAGGCTCGTTTTGTCTATGA
CGTGCCTCGCGTGTCGCCGCCGGGACGCGCCACCACAACTGTCACGACCT
TTAATAAGTCCGGAAAGGAAGTGAGTTGTATAATGTCTCAAGTCGATGTA
GTATGTCCTTCAGCAGCGGTGGTACCAGGGGCACGGTTGGTGACCAAGCC
GCTGCGTGCCCAGCCGTCCGAGAAGAACGAGGGGGAGGACGAGCCGAATA
TGTGGACTTGA
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Synonyms
Publications