NO12G00850, NO12G00850 (gene) Nannochloropsis oceanica

Overview
NameNO12G00850
Unique NameNO12G00850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1489
Alignment locationchr12:279249..280737 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:279249..280737 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00850.1NO12G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610392gene_9995Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00850.1NO12G00850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00850 ID=NO12G00850|Name=NO12G00850|organism=Nannochloropsis oceanica|type=gene|length=1489bp
ATGTCTCTCCTCCCGCTGAGGAGGTCCTGTGCTCAATCTGCATGCAGGTC
CTCCATCGACCCCTCACCAGGCCCTGCAACCACATCTTCTGTCTCAACTG
CATTCATAACTGGGCTACgtaagcatcccacgtgtcccttcgatcgctcc
gagctcaagcgtgatgacctcaggcctgcctctgatgatatgcaagcgat
tctccaggccctagactgtccggtgtcccatccattaagatcggtgctac
ttcattgtcgactcaaagacttgcttgcgcgcacacatacaacttgaatg
tcgggtgcctaaatggcttaagccctggccctgtgtcgccacgacagATG
TTGCAAGAAACGAGGCAGTTGTTGAAGAGGCGCAGAAACAGCAGCCGCAG
CCGCAGCAGCAGTCGCAGCAGCAGCAACAGCAGCAGGGTTTGAATGTCAG
AGCGCCTACTGCCTCTCGTCAACGTAGGTGGCAGGTGCCGAGAGGGCAAG
TGCAAAATGCGAGTCGTGTGAGAAAGAGAATCACAAGTTACACCTGCAGT
AGCAGCAGCAGCAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCATATTTAC
TCAACAGCGGCAAGAGCAGCAGCTGCTTCAAGAAAAGGAACATCAAGCAT
ACCATTGGTCACACCACCGTCCTGTCCAGACCCCCACCGCTCGATCTGGC
TTCAAAAGCGGCACCAGCAAAAGCAGCAAAAGCAAGAATGCCAACAGCAG
TAGCGGTAGCTCCGGCAGCAGAAGCCTTCCCAGCTTACTTTCTTCTCCTC
ATCGATACATGCGGGAGCTGGAGGAGCAATGCTTACTGACATCACAAGAC
CACGGCGCCGGACTTTCATGGCCACTGAAGATTTTCCCGCTGGCATCATT
TACTCCTTTATCTTATAGCATCATTACCAACAGCAGTAGTAGTAGCAGCA
TCAGAAGTTGTAGCGATATTAACAGCCGCAGCATTTTCCGATTTGGACAA
AAGCTGAAGTGCAGTCCTTCTTCCTGCCCGGGGAGTGCGCAGCCTATCAT
CTTCGCCCTCTCTTCACAAACACCTTTCCAGCCGAAACCGTTTCTCGTCT
TTGCTTCACGGGATTCTGTGCACGTTTTTCTTCTCTTCCTCTTCCTTCTC
GCGTGGCGACGGTCTGTAGCAGCAGAAGTAAGGGTCGTTGCACCACTAGA
AGAGTGCTCGCACTTCCAGCAACAACAGCAGGAACAGCAGTTGGGGCAGC
ACCCTCGCCTTGAGGGGAGGGGCTCGTCAAGGTCCTTTTCTCTCTTCACC
CCGTCTCCCTCCTCATCTTCATTTTCAAACAGCACCATATCATCGCCCGC
AGCATCCTCCTCCTTCTCCTCTTCCTCCTCCTCCCCCTCAATCTTCTCTT
TCTCCCCCTTCTCTCCATCGTCGCCGCTATTAAAGCCTTATTGTATTTGC
CTTAGGACGGACACGACCACCAGCGTTTATCTTTGGTGA
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protein sequence of NO12G00850.1

>NO12G00850.1-protein ID=NO12G00850.1-protein|Name=NO12G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MSLLPLRRSCAQSACRSSIDPSPGPATTSSVSTAFITGLHVARNEAVVEE
AQKQQPQPQQQSQQQQQQQGLNVRAPTASRQRRWQVPRGQVQNASRVRKR
ITSYTCSSSSSSSSSSSSSSSIFTQQRQEQQLLQEKEHQAYHWSHHRPVQ
TPTARSGFKSGTSKSSKSKNANSSSGSSGSRSLPSLLSSPHRYMRELEEQ
CLLTSQDHGAGLSWPLKIFPLASFTPLSYSIITNSSSSSSIRSCSDINSR
SIFRFGQKLKCSPSSCPGSAQPIIFALSSQTPFQPKPFLVFASRDSVHVF
LLFLFLLAWRRSVAAEVRVVAPLEECSHFQQQQQEQQLGQHPRLEGRGSS
RSFSLFTPSPSSSSFSNSTISSPAASSSFSSSSSSPSIFSFSPFSPSSPL
LKPYCICLRTDTTTSVYLW*
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Synonyms
Publications