NO12G00850.1, NO12G00850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00850.1
Unique NameNO12G00850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1260
Alignment locationchr12:279249..280737 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:279249..280737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00850NO12G00850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00850.1NO12G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00850.1.cds1NO12G00850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00850.1.cds2NO12G00850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00850.1 ID=NO12G00850.1|Name=NO12G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp
ATGTCTCTCCTCCCGCTGAGGAGGTCCTGTGCTCAATCTGCATGCAGGTC
CTCCATCGACCCCTCACCAGGCCCTGCAACCACATCTTCTGTCTCAACTG
CATTCATAACTGGGCTACATGTTGCAAGAAACGAGGCAGTTGTTGAAGAG
GCGCAGAAACAGCAGCCGCAGCCGCAGCAGCAGTCGCAGCAGCAGCAACA
GCAGCAGGGTTTGAATGTCAGAGCGCCTACTGCCTCTCGTCAACGTAGGT
GGCAGGTGCCGAGAGGGCAAGTGCAAAATGCGAGTCGTGTGAGAAAGAGA
ATCACAAGTTACACCTGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAG
TAGCAGCAGTAGCATATTTACTCAACAGCGGCAAGAGCAGCAGCTGCTTC
AAGAAAAGGAACATCAAGCATACCATTGGTCACACCACCGTCCTGTCCAG
ACCCCCACCGCTCGATCTGGCTTCAAAAGCGGCACCAGCAAAAGCAGCAA
AAGCAAGAATGCCAACAGCAGTAGCGGTAGCTCCGGCAGCAGAAGCCTTC
CCAGCTTACTTTCTTCTCCTCATCGATACATGCGGGAGCTGGAGGAGCAA
TGCTTACTGACATCACAAGACCACGGCGCCGGACTTTCATGGCCACTGAA
GATTTTCCCGCTGGCATCATTTACTCCTTTATCTTATAGCATCATTACCA
ACAGCAGTAGTAGTAGCAGCATCAGAAGTTGTAGCGATATTAACAGCCGC
AGCATTTTCCGATTTGGACAAAAGCTGAAGTGCAGTCCTTCTTCCTGCCC
GGGGAGTGCGCAGCCTATCATCTTCGCCCTCTCTTCACAAACACCTTTCC
AGCCGAAACCGTTTCTCGTCTTTGCTTCACGGGATTCTGTGCACGTTTTT
CTTCTCTTCCTCTTCCTTCTCGCGTGGCGACGGTCTGTAGCAGCAGAAGT
AAGGGTCGTTGCACCACTAGAAGAGTGCTCGCACTTCCAGCAACAACAGC
AGGAACAGCAGTTGGGGCAGCACCCTCGCCTTGAGGGGAGGGGCTCGTCA
AGGTCCTTTTCTCTCTTCACCCCGTCTCCCTCCTCATCTTCATTTTCAAA
CAGCACCATATCATCGCCCGCAGCATCCTCCTCCTTCTCCTCTTCCTCCT
CCTCCCCCTCAATCTTCTCTTTCTCCCCCTTCTCTCCATCGTCGCCGCTA
TTAAAGCCTTATTGTATTTGCCTTAGGACGGACACGACCACCAGCGTTTA
TCTTTGGTGA
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protein sequence of NO12G00850.1

>NO12G00850.1-protein ID=NO12G00850.1-protein|Name=NO12G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MSLLPLRRSCAQSACRSSIDPSPGPATTSSVSTAFITGLHVARNEAVVEE
AQKQQPQPQQQSQQQQQQQGLNVRAPTASRQRRWQVPRGQVQNASRVRKR
ITSYTCSSSSSSSSSSSSSSSIFTQQRQEQQLLQEKEHQAYHWSHHRPVQ
TPTARSGFKSGTSKSSKSKNANSSSGSSGSRSLPSLLSSPHRYMRELEEQ
CLLTSQDHGAGLSWPLKIFPLASFTPLSYSIITNSSSSSSIRSCSDINSR
SIFRFGQKLKCSPSSCPGSAQPIIFALSSQTPFQPKPFLVFASRDSVHVF
LLFLFLLAWRRSVAAEVRVVAPLEECSHFQQQQQEQQLGQHPRLEGRGSS
RSFSLFTPSPSSSSFSNSTISSPAASSSFSSSSSSPSIFSFSPFSPSSPL
LKPYCICLRTDTTTSVYLW*
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mRNA from alignment at chr12:279249..280737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00850.1 ID=NO12G00850.1|Name=NO12G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp|location=Sequence derived from alignment at chr12:279249..280737+ (Nannochloropsis oceanica)
ATGTCTCTCCTCCCGCTGAGGAGGTCCTGTGCTCAATCTGCATGCAGGTC
CTCCATCGACCCCTCACCAGGCCCTGCAACCACATCTTCTGTCTCAACTG
CATTCATAACTGGGCTACGTAAGCATCCCACGTGTCCCTTCGATCGCTCC
GAGCTCAAGCGTGATGACCTCAGGCCTGCCTCTGATGATATGCAAGCGAT
TCTCCAGGCCCTAGACTGTCCGGTGTCCCATCCATTAAGATCGGTGCTAC
TTCATTGTCGACTCAAAGACTTGCTTGCGCGCACACATACAACTTGAATG
TCGGGTGCCTAAATGGCTTAAGCCCTGGCCCTGTGTCGCCACGACAGATG
TTGCAAGAAACGAGGCAGTTGTTGAAGAGGCGCAGAAACAGCAGCCGCAG
CCGCAGCAGCAGTCGCAGCAGCAGCAACAGCAGCAGGGTTTGAATGTCAG
AGCGCCTACTGCCTCTCGTCAACGTAGGTGGCAGGTGCCGAGAGGGCAAG
TGCAAAATGCGAGTCGTGTGAGAAAGAGAATCACAAGTTACACCTGCAGT
AGCAGCAGCAGCAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCATATTTAC
TCAACAGCGGCAAGAGCAGCAGCTGCTTCAAGAAAAGGAACATCAAGCAT
ACCATTGGTCACACCACCGTCCTGTCCAGACCCCCACCGCTCGATCTGGC
TTCAAAAGCGGCACCAGCAAAAGCAGCAAAAGCAAGAATGCCAACAGCAG
TAGCGGTAGCTCCGGCAGCAGAAGCCTTCCCAGCTTACTTTCTTCTCCTC
ATCGATACATGCGGGAGCTGGAGGAGCAATGCTTACTGACATCACAAGAC
CACGGCGCCGGACTTTCATGGCCACTGAAGATTTTCCCGCTGGCATCATT
TACTCCTTTATCTTATAGCATCATTACCAACAGCAGTAGTAGTAGCAGCA
TCAGAAGTTGTAGCGATATTAACAGCCGCAGCATTTTCCGATTTGGACAA
AAGCTGAAGTGCAGTCCTTCTTCCTGCCCGGGGAGTGCGCAGCCTATCAT
CTTCGCCCTCTCTTCACAAACACCTTTCCAGCCGAAACCGTTTCTCGTCT
TTGCTTCACGGGATTCTGTGCACGTTTTTCTTCTCTTCCTCTTCCTTCTC
GCGTGGCGACGGTCTGTAGCAGCAGAAGTAAGGGTCGTTGCACCACTAGA
AGAGTGCTCGCACTTCCAGCAACAACAGCAGGAACAGCAGTTGGGGCAGC
ACCCTCGCCTTGAGGGGAGGGGCTCGTCAAGGTCCTTTTCTCTCTTCACC
CCGTCTCCCTCCTCATCTTCATTTTCAAACAGCACCATATCATCGCCCGC
AGCATCCTCCTCCTTCTCCTCTTCCTCCTCCTCCCCCTCAATCTTCTCTT
TCTCCCCCTTCTCTCCATCGTCGCCGCTATTAAAGCCTTATTGTATTTGC
CTTAGGACGGACACGACCACCAGCGTTTATCTTTGGTGA
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Coding sequence (CDS) from alignment at chr12:279249..280737+

>NO12G00850.1 ID=NO12G00850.1|Name=NO12G00850.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr12:279249..280737+ (Nannochloropsis oceanica)
ATGTCTCTCCTCCCGCTGAGGAGGTCCTGTGCTCAATCTGCATGCAGGTC
CTCCATCGACCCCTCACCAGGCCCTGCAACCACATCTTCTGTCTCAACTG
CATTCATAACTGGGCTACATGTTGCAAGAAACGAGGCAGTTGTTGAAGAG
GCGCAGAAACAGCAGCCGCAGCCGCAGCAGCAGTCGCAGCAGCAGCAACA
GCAGCAGGGTTTGAATGTCAGAGCGCCTACTGCCTCTCGTCAACGTAGGT
GGCAGGTGCCGAGAGGGCAAGTGCAAAATGCGAGTCGTGTGAGAAAGAGA
ATCACAAGTTACACCTGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAG
TAGCAGCAGTAGCATATTTACTCAACAGCGGCAAGAGCAGCAGCTGCTTC
AAGAAAAGGAACATCAAGCATACCATTGGTCACACCACCGTCCTGTCCAG
ACCCCCACCGCTCGATCTGGCTTCAAAAGCGGCACCAGCAAAAGCAGCAA
AAGCAAGAATGCCAACAGCAGTAGCGGTAGCTCCGGCAGCAGAAGCCTTC
CCAGCTTACTTTCTTCTCCTCATCGATACATGCGGGAGCTGGAGGAGCAA
TGCTTACTGACATCACAAGACCACGGCGCCGGACTTTCATGGCCACTGAA
GATTTTCCCGCTGGCATCATTTACTCCTTTATCTTATAGCATCATTACCA
ACAGCAGTAGTAGTAGCAGCATCAGAAGTTGTAGCGATATTAACAGCCGC
AGCATTTTCCGATTTGGACAAAAGCTGAAGTGCAGTCCTTCTTCCTGCCC
GGGGAGTGCGCAGCCTATCATCTTCGCCCTCTCTTCACAAACACCTTTCC
AGCCGAAACCGTTTCTCGTCTTTGCTTCACGGGATTCTGTGCACGTTTTT
CTTCTCTTCCTCTTCCTTCTCGCGTGGCGACGGTCTGTAGCAGCAGAAGT
AAGGGTCGTTGCACCACTAGAAGAGTGCTCGCACTTCCAGCAACAACAGC
AGGAACAGCAGTTGGGGCAGCACCCTCGCCTTGAGGGGAGGGGCTCGTCA
AGGTCCTTTTCTCTCTTCACCCCGTCTCCCTCCTCATCTTCATTTTCAAA
CAGCACCATATCATCGCCCGCAGCATCCTCCTCCTTCTCCTCTTCCTCCT
CCTCCCCCTCAATCTTCTCTTTCTCCCCCTTCTCTCCATCGTCGCCGCTA
TTAAAGCCTTATTGTATTTGCCTTAGGACGGACACGACCACCAGCGTTTA
TCTTTGGTGA
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Synonyms
Publications