NO12G00840, NO12G00840 (gene) Nannochloropsis oceanica

Overview
NameNO12G00840
Unique NameNO12G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1726
Alignment locationchr12:276721..278446 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:276721..278446 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004612phosphoenolpyruvate carboxykinase (ATP) activity
GO:0005524ATP binding
GO:0005524ATP binding
GO:0004612phosphoenolpyruvate carboxykinase (ATP) activity
Vocabulary: Biological Process
TermDefinition
GO:0006094gluconeogenesis
GO:0006094gluconeogenesis
Vocabulary: INTERPRO
TermDefinition
IPR001272PEP_carboxykinase_ATP
Homology
BLAST of NO12G00840 vs. NCBI_GenBank
Match: EWM25940.1 (uncharacterized protein Naga_100469g3 [Nannochloropsis gaditana])

HSP 1 Score: 280.0 bits (715), Expect = 6.900e-72
Identity = 160/233 (68.67%), Postives = 180/233 (77.25%), Query Frame = 0
Query:   14 MLARAVQVAVRCRGGAVAALRNGSIPAVVATAPIRCLASTPVTETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQL----KGKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVEDGSSKGGA-FNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAKAFAGVMFSGGKAGEVTGATVALGGVPATAIKSAMSLVAEAMK 242
            ML RA Q A+R R    A L N      +A+ P R L+ TPVTETDEY IFPRE PGLDYKLNWSLNGDDVTP GNAYRNLDA+ L    KG KA + G    K+LEAGD+VPFETFD HLADVKA LEKA+DLYVEDG+ KGG+ FN+RVI DS +YALAAKALL+Q++   S WPF K+V VYAAGGAK F GVMF+GGK G VTGATVA+GG PATAIK+AMSLVAE MK
Sbjct:    1 MLVRAFQGALRRR----AVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGAD--KVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKV--SGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMK 225          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: XP_005856028.1 (hypothetical protein NGA_0514700 [Nannochloropsis gaditana CCMP526] >EKU20321.1 hypothetical protein NGA_0514700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 265.0 bits (676), Expect = 2.300e-67
Identity = 160/261 (61.30%), Postives = 180/261 (68.97%), Query Frame = 0
Query:   14 MLARAVQVAVRCRGGAVAALRNGSIPAVVATAPIRCLASTPVTETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQL----KGKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATL----------------------------EKATDLYVEDGSSKGGA-FNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAKAFAGVMFSGGKAGEVTGATVALGGVPATAIKSAMSLVAEAMK 242
            ML RA Q A+R R    A L N      +A+ P R L+ TPVTETDEY IFPRE PGLDYKLNWSLNGDDVTP GNAYRNLDA+ L    KG KA + G    K+LEAGD+VPFETFD HLADVKA L                            EKA+DLYVEDG+ KGG+ FN+RVI DS +YALAAKALL+Q++   S WPF K+V VYAAGGAK F GVMF+GGK G VTGATVA+GG PATAIK+AMSLVAE MK
Sbjct:    1 MLVRAFQGALRRR----AVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGAD--KVLEAGDSVPFETFDLHLADVKAALELRGSGTPPLMPCPLLLLACWPYTHQLKEKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKV--SGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMK 253          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: XP_024572098.1 (hypothetical protein PHYSODRAFT_348042 [Plasmopara halstedii] >CEG35729.1 hypothetical protein PHYSODRAFT_348042 [Plasmopara halstedii])

HSP 1 Score: 85.1 bits (209), Expect = 3.200e-13
Identity = 57/146 (39.04%), Postives = 80/146 (54.79%), Query Frame = 0
Query:   59 DEYII-FPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLKG-KKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVED---GSSKGGAFNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAK 200
            D++++ FP E  GL+ + NWSL GDDVTP G+A+RNL  S+L+   K  K  GK VK+ E    + F TF+     V   L    +L+ +D   GS K     VRVI+DSP  AL A+ LL +   +       + +VVY A G +
Sbjct:   31 DKFVVDFPEEHEGLNIEFNWSLAGDDVTPHGDAFRNLSWSKLEELAKHEKPAGKSVKIEEVDVNIVFNTFEGLYEKVTEHLSTEPNLFTQDGAVGSFKDDRTRVRVISDSPLVALFAQNLLVRVPIKDPH--AARPIVVYVATGGE 174          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: OWZ13238.1 (hypothetical protein PHMEG_00013471, partial [Phytophthora megakarya])

HSP 1 Score: 80.9 bits (198), Expect = 6.100e-12
Identity = 53/145 (36.55%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   59 DEYII-FPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLKGKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVED---GSSKGGAFNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAK 200
            D++++ FP E  GL+ + NWSL  DDVTP G+A+RNL   +L      K  GK V + E    + F  F+     V   L     LY +D   GS K     VRVI+DSP  AL A++LL +   + +     + +VVY A G +
Sbjct:   31 DKFVVEFPEEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLAELVKEKPAGKNVAIQEVDVNIVFNDFEGLYEQVTEHLSTEPSLYTQDGAVGSYKDDRTRVRVISDSPLVALFAQSLLVRVPIKDAH--AARPIVVYVATGGE 173          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: XP_009535858.1 (hypothetical protein PHYSODRAFT_348042 [Phytophthora sojae] >EGZ09225.1 hypothetical protein PHYSODRAFT_348042 [Phytophthora sojae])

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-11
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 0
Query:   59 DEYII-FPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQL-KGKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVED---GSSKGGAFNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAK 200
            D++++ FP E  GL+ + NWSL  DDVTP G+A+RN+   +L +  K  K  GK+V + E   ++ F  FD     V   L    +LY +D   GS K     VRVI+DSP  AL A++LL +   +       + +VVY A G +
Sbjct:   31 DKFVVEFPEEHEGLNIEFNWSLADDDVTPHGDAFRNMSWPKLAELAKQEKPAGKKVAIEEVDVSIVFNDFDGLYEKVTDHLSTEANLYTQDGAVGSFKDDRTRVRVISDSPLVALFAQSLLVRVPIKDPH--AARPIVVYVATGGE 174          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: ETK81104.1 (hypothetical protein L915_13364, partial [Phytophthora parasitica])

HSP 1 Score: 78.6 bits (192), Expect = 3.000e-11
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 0
Query:   59 DEYII-FPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQL-KGKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVED---GSSKGGAFNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAK 200
            D++++ FP+E  GL+ + NWSL  DDVTP G+A+RNL   +L +  K  K  GK+V + E   ++ F  F+     V   L     LY +D   GS K     VRVI+DSP  AL A++LL +   +       + +VVY A G +
Sbjct:   31 DKFVVEFPQEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLAELAKQQKPAGKKVAIEEVDVSIVFNDFEGLYEKVTEHLSTEPSLYTQDGAVGSFKDDRTRVRVISDSPLVALFAQSLLVRVPIKDVH--AARPIVVYVATGGE 174          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: PNR37393.1 (hypothetical protein PHYPA_020502 [Physcomitrella patens])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 53/145 (36.55%), Postives = 73/145 (50.34%), Query Frame = 0
Query:   56 TETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLKGKKAG-KEGGKEVKLLEAGDTVPFET------FDAHLADVKATLEKATDLYVED---GSSKGGAFNVRVIADSPAYALAAKALLEQAQTR---SSSWPFT 188
            T  ++ IIFPRE PG++Y LNW+L    + P G AYRNL  S+LK   A   +     K+   G      T      F+    +V A L  +  +YV D   GSS      VR I+D+P+ AL  +++LE   TR   S  +PFT
Sbjct:   40 TGQNQQIIFPREGPGVNYALNWALCAKGIAPKGEAYRNLRGSELKKLNASIPKPSSTTKVYARGSYTAGATDISKAQFNRLFKEVTAFLANSQKIYVHDGAVGSSPLSDAKVRTISDNPSSALLFRSILEPVPTRQVSSQVFPFT 184          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: XP_024399306.1 (uncharacterized protein LOC112293744 isoform X2 [Physcomitrella patens])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 53/145 (36.55%), Postives = 73/145 (50.34%), Query Frame = 0
Query:   56 TETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLKGKKAG-KEGGKEVKLLEAGDTVPFET------FDAHLADVKATLEKATDLYVED---GSSKGGAFNVRVIADSPAYALAAKALLEQAQTR---SSSWPFT 188
            T  ++ IIFPRE PG++Y LNW+L    + P G AYRNL  S+LK   A   +     K+   G      T      F+    +V A L  +  +YV D   GSS      VR I+D+P+ AL  +++LE   TR   S  +PFT
Sbjct:   40 TGQNQQIIFPREGPGVNYALNWALCAKGIAPKGEAYRNLRGSELKKLNASIPKPSSTTKVYARGSYTAGATDISKAQFNRLFKEVTAFLANSQKIYVHDGAVGSSPLSDAKVRTISDNPSSALLFRSILEPVPTRQVSSQVFPFT 184          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: XP_024399305.1 (uncharacterized protein LOC112293744 isoform X1 [Physcomitrella patens])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 53/145 (36.55%), Postives = 73/145 (50.34%), Query Frame = 0
Query:   56 TETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLKGKKAG-KEGGKEVKLLEAGDTVPFET------FDAHLADVKATLEKATDLYVED---GSSKGGAFNVRVIADSPAYALAAKALLEQAQTR---SSSWPFT 188
            T  ++ IIFPRE PG++Y LNW+L    + P G AYRNL  S+LK   A   +     K+   G      T      F+    +V A L  +  +YV D   GSS      VR I+D+P+ AL  +++LE   TR   S  +PFT
Sbjct:   40 TGQNQQIIFPREGPGVNYALNWALCAKGIAPKGEAYRNLRGSELKKLNASIPKPSSTTKVYARGSYTAGATDISKAQFNRLFKEVTAFLANSQKIYVHDGAVGSSPLSDAKVRTISDNPSSALLFRSILEPVPTRQVSSQVFPFT 184          
BLAST of NO12G00840 vs. NCBI_GenBank
Match: POM78581.1 (Nucleotide binding protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 74.3 bits (181), Expect = 5.700e-10
Identity = 60/192 (31.25%), Postives = 93/192 (48.44%), Query Frame = 0
Query:   59 DEYII-FPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLKG-KKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVED---GSSKGGAFNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGA-----KAFAGVMFSGGKAGEVTGATVALGGVPATAIKSAMSLVAEAM 241
            D++++ FP+E  GL+ + NWSL  DDVTP G+A+RNL   +L+   K  K  GK+V + E   ++ F  F+     V   L     LY +D   GS K     VRVI+DSP  AL  ++LL +   + +     + +VVY A G      +  A ++      G      V  G     ++K A+ L  + +
Sbjct:   31 DKFVVEFPQEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLEELAKQEKPAGKKVAIEEVDVSIVFNDFEGLYEKVTEHLSTEPSLYTQDGAVGSFKDDRTRVRVISDSPLVALFTQSLLVRVPIKDAH--AARPIVVYVATGGEFKGKEPQAQLLVDNDDEGATFVKVVITGAADLASVKDAVGLAKKKL 220          
The following BLAST results are available for this feature:
BLAST of NO12G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25940.16.900e-7268.67uncharacterized protein Naga_100469g3 [Nannochloro... [more]
XP_005856028.12.300e-6761.30hypothetical protein NGA_0514700 [Nannochloropsis ... [more]
XP_024572098.13.200e-1339.04hypothetical protein PHYSODRAFT_348042 [Plasmopara... [more]
OWZ13238.16.100e-1236.55hypothetical protein PHMEG_00013471, partial [Phyt... [more]
XP_009535858.11.400e-1136.99hypothetical protein PHYSODRAFT_348042 [Phytophtho... [more]
ETK81104.13.000e-1136.99hypothetical protein L915_13364, partial [Phytopht... [more]
PNR37393.12.000e-1036.55hypothetical protein PHYPA_020502 [Physcomitrella ... [more]
XP_024399306.12.000e-1036.55uncharacterized protein LOC112293744 isoform X2 [P... [more]
XP_024399305.12.000e-1036.55uncharacterized protein LOC112293744 isoform X1 [P... [more]
POM78581.15.700e-1031.25Nucleotide binding protein [Phytophthora palmivora... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009995NSK009995Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00840.1NO12G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610390gene_9993Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100469g3gene4584Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00840.1NO12G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00840 ID=NO12G00840|Name=NO12G00840|organism=Nannochloropsis oceanica|type=gene|length=1726bp
GAAAAGGACACTAATCGGGCGGATCTACCCTCGTACACGACCTCTACGTC
TCTATGTGACTGCTATATGCATGTGGTTATAATGTTTGCGTCTGTCACTC
CATTTCTAGCCTTGGGTTTGCGTTTGGTGAGCCGAAAACCGAGGGCCTGC
TTTTCACGCTCCCCTCCCTCTCCCATTCCCAACATCATCATCGTCATAAT
CGCACAAGGCACTGCTGAGAACACCCTGACATGTCATTATGCACACACAT
GTACACAGAACCACAGCGCCATCCACGATGCTGGCCCGGGCAGTCCAAGT
GGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGAGCA
TCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACTCCA
GTCACGgtaagcacgataaacgccctgctaaacctccctatcgcctatct
tgtcgccgtcctctgccccgtctttctgttatcggggggtgtgagaccag
gggcatgaatcgaacgcgtgactggtcgttggacaagcccgcttaaccct
ctcatccctccctcctcccctccttccttcccgccgatttcccatcctgc
tttccccccttcctagGAAACGGACGAATACATCATCTTCCCTCGCGAGG
CTCCCGGCCTGGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATGTC
ACACCGGCCGGCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAGGG
GAAGAAGGCAGGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAG
GGGATACGGTGCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGAAG
GCGACGTTGgtaaggaaaaatattggaaatttagggagagagagggagag
aggggaaggaggatgggaagaaagcaagctgagtgtgattgcaacatgca
cgcataataccttaaccctctcctttcctcctgccttcctcccttccttc
ctccctcctttgcttgcagGAAAAAGCCACCGATTTGTATGTAGAAGATG
GCTCCAGCAAAGGCGGTGCTTTTAACGTGCGTGTCATAGCCGACAGCCCC
GCCTACGCCCTGGCTGCAAAGGCTTTGTTGGAACAAGCACAAACCAGAAG
TAGCTCCTGGCCATTCACCAAGAGTGTGGTTGTGTATGCTGCGGGGGGCG
CCAAGGCGTTTGCTGGCGTGATGTTTTCGGGGGGGAAGGCAGGGGAGGTG
ACTGgtaaggggggagatcggcgagggagggagggaggaagggagggggt
gttaatgcagatgtgggagaggaattcagcgattagcccagcgtttgcgc
aacaatttatgtgttgaaaatacagaatttctcaacgcatccaccctctc
ttcacaacttgcgacagGTGCGACGGTGGCGTTGGGTGGCGTCCCGGCCA
CGGCAATCAAGAGTGCGATGAGCCTGGTGGCGGAAGCGATGAAGAAGTGA
AGGCCATCACATCACAAAGAACAAGAGGGTGGCCATTTTATAGCAGATTG
TTGAAATAGTGCAGTGATTGTGTGGCTCCGCTAGGGGGAAGGGAGGAGGG
AGGGAAGGATAGAGGAAGGGAGGAGGGAGCTGCAGACTTGTGTATGACTG
ATGATTTACGTGCCCGGTGGCGGACGAAGGACACGATAAAGAAAGAAAAG
ACGAAACTCACATGAGGTACTCGGCA
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protein sequence of NO12G00840.1

>NO12G00840.1-protein ID=NO12G00840.1-protein|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MHTHVHRTTAPSTMLARAVQVAVRCRGGAVAALRNGSIPAVVATAPIRCL
ASTPVTETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLK
GKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVEDGSS
KGGAFNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAKA
FAGVMFSGGKAGEVTGATVALGGVPATAIKSAMSLVAEAMKK*
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Synonyms
Publications