NO12G00840.1, NO12G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00840.1
Unique NameNO12G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1193
Alignment locationchr12:276721..278446 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:276721..278446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G00840.1 vs.
Match: EWM25940.1 (uncharacterized protein Naga_100469g3 [Nannochloropsis gaditana])

HSP 1 Score: 280.0 bits (715), Expect = 6.900e-72
Identity = 160/233 (68.67%), Postives = 180/233 (77.25%), Query Frame = 0 
Query:   14 MLARAVQVAVRCRGGAVAALRNGSIPAVVATAPIRCLASTPVTETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQL----KGKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVEDGSSKGGA-FNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAKAFAGVMFSGGKAGEVTGATVALGGVPATAIKSAMSLVAEAMK 242
            ML RA Q A+R R    A L N      +A+ P R L+ TPVTETDEY IFPRE PGLDYKLNWSLNGDDVTP GNAYRNLDA+ L    KG KA + G    K+LEAGD+VPFETFD HLADVKA LEKA+DLYVEDG+ KGG+ FN+RVI DS +YALAAKALL+Q++   S WPF K+V VYAAGGAK F GVMF+GGK G VTGATVA+GG PATAIK+AMSLVAE MK
Sbjct:    1 MLVRAFQGALRRR----AVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGAD--KVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKV--SGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMK 225
The following BLAST results are available for this feature:
BLAST of NO12G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25940.16.900e-7268.67uncharacterized protein Naga_100469g3 [Nannochloro... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00840NO12G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00840.1NO12G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00840.1.cds1NO12G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00840.1.cds2NO12G00840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00840.1.cds3NO12G00840.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00840.1.cds4NO12G00840.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00840.1 ID=NO12G00840.1|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
GAAAAGGACACTAATCGGGCGGATCTACCCTCGTACACGACCTCTACGTC
TCTATGTGACTGCTATATGCATGTGGTTATAATGTTTGCGTCTGTCACTC
CATTTCTAGCCTTGGGTTTGCGTTTGGTGAGCCGAAAACCGAGGGCCTGC
TTTTCACGCTCCCCTCCCTCTCCCATTCCCAACATCATCATCGTCATAAT
CGCACAAGGCACTGCTGAGAACACCCTGACATGTCATTATGCACACACAT
GTACACAGAACCACAGCGCCATCCACGATGCTGGCCCGGGCAGTCCAAGT
GGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGAGCA
TCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACTCCA
GTCACGGAAACGGACGAATACATCATCTTCCCTCGCGAGGCTCCCGGCCT
GGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATGTCACACCGGCCG
GCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAGGGGAAGAAGGCA
GGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAGGGGATACGGT
GCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGAAGGCGACGTTGG
AAAAAGCCACCGATTTGTATGTAGAAGATGGCTCCAGCAAAGGCGGTGCT
TTTAACGTGCGTGTCATAGCCGACAGCCCCGCCTACGCCCTGGCTGCAAA
GGCTTTGTTGGAACAAGCACAAACCAGAAGTAGCTCCTGGCCATTCACCA
AGAGTGTGGTTGTGTATGCTGCGGGGGGCGCCAAGGCGTTTGCTGGCGTG
ATGTTTTCGGGGGGGAAGGCAGGGGAGGTGACTGGTGCGACGGTGGCGTT
GGGTGGCGTCCCGGCCACGGCAATCAAGAGTGCGATGAGCCTGGTGGCGG
AAGCGATGAAGAAGTGAAGGCCATCACATCACAAAGAACAAGAGGGTGGC
CATTTTATAGCAGATTGTTGAAATAGTGCAGTGATTGTGTGGCTCCGCTA
GGGGGAAGGGAGGAGGGAGGGAAGGATAGAGGAAGGGAGGAGGGAGCTGC
AGACTTGTGTATGACTGATGATTTACGTGCCCGGTGGCGGACGAAGGACA
CGATAAAGAAAGAAAAGACGAAACTCACATGAGGTACTCGGCA
back to top

protein sequence of NO12G00840.1

>NO12G00840.1-protein ID=NO12G00840.1-protein|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MHTHVHRTTAPSTMLARAVQVAVRCRGGAVAALRNGSIPAVVATAPIRCL
ASTPVTETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLK
GKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVEDGSS
KGGAFNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAKA
FAGVMFSGGKAGEVTGATVALGGVPATAIKSAMSLVAEAMKK*
back to top

mRNA from alignment at chr12:276721..278446+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00840.1 ID=NO12G00840.1|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp|location=Sequence derived from alignment at chr12:276721..278446+ (Nannochloropsis oceanica)
GAAAAGGACACTAATCGGGCGGATCTACCCTCGTACACGACCTCTACGTC
TCTATGTGACTGCTATATGCATGTGGTTATAATGTTTGCGTCTGTCACTC
CATTTCTAGCCTTGGGTTTGCGTTTGGTGAGCCGAAAACCGAGGGCCTGC
TTTTCACGCTCCCCTCCCTCTCCCATTCCCAACATCATCATCGTCATAAT
CGCACAAGGCACTGCTGAGAACACCCTGACATGTCATTATGCACACACAT
GTACACAGAACCACAGCGCCATCCACGATGCTGGCCCGGGCAGTCCAAGT
GGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGAGCA
TCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACTCCA
GTCACGGTAAGCACGATAAACGCCCTGCTAAACCTCCCTATCGCCTATCT
TGTCGCCGTCCTCTGCCCCGTCTTTCTGTTATCGGGGGGTGTGAGACCAG
GGGCATGAATCGAACGCGTGACTGGTCGTTGGACAAGCCCGCTTAACCCT
CTCATCCCTCCCTCCTCCCCTCCTTCCTTCCCGCCGATTTCCCATCCTGC
TTTCCCCCCTTCCTAGGAAACGGACGAATACATCATCTTCCCTCGCGAGG
CTCCCGGCCTGGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATGTC
ACACCGGCCGGCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAGGG
GAAGAAGGCAGGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAG
GGGATACGGTGCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGAAG
GCGACGTTGGTAAGGAAAAATATTGGAAATTTAGGGAGAGAGAGGGAGAG
AGGGGAAGGAGGATGGGAAGAAAGCAAGCTGAGTGTGATTGCAACATGCA
CGCATAATACCTTAACCCTCTCCTTTCCTCCTGCCTTCCTCCCTTCCTTC
CTCCCTCCTTTGCTTGCAGGAAAAAGCCACCGATTTGTATGTAGAAGATG
GCTCCAGCAAAGGCGGTGCTTTTAACGTGCGTGTCATAGCCGACAGCCCC
GCCTACGCCCTGGCTGCAAAGGCTTTGTTGGAACAAGCACAAACCAGAAG
TAGCTCCTGGCCATTCACCAAGAGTGTGGTTGTGTATGCTGCGGGGGGCG
CCAAGGCGTTTGCTGGCGTGATGTTTTCGGGGGGGAAGGCAGGGGAGGTG
ACTGGTAAGGGGGGAGATCGGCGAGGGAGGGAGGGAGGAAGGGAGGGGGT
GTTAATGCAGATGTGGGAGAGGAATTCAGCGATTAGCCCAGCGTTTGCGC
AACAATTTATGTGTTGAAAATACAGAATTTCTCAACGCATCCACCCTCTC
TTCACAACTTGCGACAGGTGCGACGGTGGCGTTGGGTGGCGTCCCGGCCA
CGGCAATCAAGAGTGCGATGAGCCTGGTGGCGGAAGCGATGAAGAAGTGA
AGGCCATCACATCACAAAGAACAAGAGGGTGGCCATTTTATAGCAGATTG
TTGAAATAGTGCAGTGATTGTGTGGCTCCGCTAGGGGGAAGGGAGGAGGG
AGGGAAGGATAGAGGAAGGGAGGAGGGAGCTGCAGACTTGTGTATGACTG
ATGATTTACGTGCCCGGTGGCGGACGAAGGACACGATAAAGAAAGAAAAG
ACGAAACTCACATGAGGTACTCGGCA
back to top

Coding sequence (CDS) from alignment at chr12:276721..278446+

>NO12G00840.1 ID=NO12G00840.1|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=729bp|location=Sequence derived from alignment at chr12:276721..278446+ (Nannochloropsis oceanica)
ATGCACACACATGTACACAGAACCACAGCGCCATCCACGATGCTGGCCCG
GGCAGTCCAAGTGGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTC
GAAATGGGAGCATCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCTT
GCCAGCACTCCAGTCACGGAAACGGACGAATACATCATCTTCCCTCGCGA
GGCTCCCGGCCTGGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATG
TCACACCGGCCGGCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAG
GGGAAGAAGGCAGGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGC
AGGGGATACGGTGCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGA
AGGCGACGTTGGAAAAAGCCACCGATTTGTATGTAGAAGATGGCTCCAGC
AAAGGCGGTGCTTTTAACGTGCGTGTCATAGCCGACAGCCCCGCCTACGC
CCTGGCTGCAAAGGCTTTGTTGGAACAAGCACAAACCAGAAGTAGCTCCT
GGCCATTCACCAAGAGTGTGGTTGTGTATGCTGCGGGGGGCGCCAAGGCG
TTTGCTGGCGTGATGTTTTCGGGGGGGAAGGCAGGGGAGGTGACTGGTGC
GACGGTGGCGTTGGGTGGCGTCCCGGCCACGGCAATCAAGAGTGCGATGA
GCCTGGTGGCGGAAGCGATGAAGAAGTGA
back to top
Synonyms
Publications