NO12G00780, NO12G00780 (gene) Nannochloropsis oceanica

Overview
NameNO12G00780
Unique NameNO12G00780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length813
Alignment locationchr12:263032..263844 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:263032..263844 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0017053transcriptional repressor complex
Vocabulary: INTERPRO
TermDefinition
IPR028226LIN37
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
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BLAST of NO12G00780 vs. NCBI_GenBank
Match: XP_005856041.1 (uroporphyrinogen 3 C-methyltransferase [Nannochloropsis gaditana CCMP526] >EKU20334.1 uroporphyrinogen 3 C-methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 64.3 bits (155), Expect = 6.600e-7
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0 
Query:   42 IHQVFDRRLNFSNISTDASLYSMLRAWVQDDPLRQPPW 80
            IH++  RR+NF  +S DASLYSMLRAWVQDDP RQ PW
Sbjct:  549 IHEILGRRVNFDALSADASLYSMLRAWVQDDPTRQVPW 586
The following BLAST results are available for this feature:
BLAST of NO12G00780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856041.16.600e-771.05uroporphyrinogen 3 C-methyltransferase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009987NSK009987Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00780.1NO12G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00780.1NO12G00780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00780 ID=NO12G00780|Name=NO12G00780|organism=Nannochloropsis oceanica|type=gene|length=813bp
ATGGCAAGGCCCGCTGCTATCTCCACCGCAGCAGCTGGATCCACCTCCAC
CTCTACCTCCTCTTCCGCCTCCTCCTCGACAGGCAACAATCCATCGAGCA
GCAATAGCACTGCCACTCCCACAATTCACCAAGTCTTCGACCGCCGCCTG
AATTTCAGTAACATATCTACCGATGCCTCCCTTTACTCCATGCTTCGGGC
GTGGGTGCAAGACGACCCGCTGCGGCAACCGCCATGGTATTTTCACGTCA
AGCAGGAAGGGAGGGAGGGAGGAAGGGCCCTCCATTCGTCGCCCCCTTCA
TCTCTATACTTTTCGTCTTCGATGGTAGAAGGAGGACAAGAAATAGGGGA
AATAGGAGGGTTCTTCCTTCCACCCCCCTTGCCAGAGACGGCCATGACGC
TGCTGAAAGGGTCTGTCGCTCCTGCTGCTCCTCTTTCTCCCTCTTCTTCT
CCTGCACCTCTCGCTGCTGGCATTGCTGCCAAAGGTACCACCATTTCTAC
AAGCAGCAGGACGATGAACAGAGACCGTAAGTCGGCACCAGCACCAGCAG
CAGCGGCACCACCACCGCTACCAGCACCAGCACCAACATCAGCAGGCTTG
GCTATTAATGGGTTGCAGCACGTTCCAACGGAAATCCTTCTGGATCTTCA
CGTGGGCTTCTTCCGGCAGGTCAGAAAAGGTTTGGTCAAAGTGAGAGAGA
GGAGGGTGGGGAGGTTTCGGCATCGGTTGGCGTTGTTGGGGTTGGTGGGA
GGGAAAAGAAAGAGGACGAGAAGGAGGGAGGGAACGATGGTGGATGAGCG
GATACAGGAGTAG
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protein sequence of NO12G00780.1

>NO12G00780.1-protein ID=NO12G00780.1-protein|Name=NO12G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MARPAAISTAAAGSTSTSTSSSASSSTGNNPSSSNSTATPTIHQVFDRRL
NFSNISTDASLYSMLRAWVQDDPLRQPPWYFHVKQEGREGGRALHSSPPS
SLYFSSSMVEGGQEIGEIGGFFLPPPLPETAMTLLKGSVAPAAPLSPSSS
PAPLAAGIAAKGTTISTSSRTMNRDRKSAPAPAAAAPPPLPAPAPTSAGL
AINGLQHVPTEILLDLHVGFFRQVRKGLVKVRERRVGRFRHRLALLGLVG
GKRKRTRRREGTMVDERIQE*
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Synonyms
Publications