NO12G00780.1, NO12G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00780.1
Unique NameNO12G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length813
Alignment locationchr12:263032..263844 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:263032..263844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00780NO12G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00780.1NO12G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00780.1.cds1NO12G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00780.1 ID=NO12G00780.1|Name=NO12G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
ATGGCAAGGCCCGCTGCTATCTCCACCGCAGCAGCTGGATCCACCTCCAC
CTCTACCTCCTCTTCCGCCTCCTCCTCGACAGGCAACAATCCATCGAGCA
GCAATAGCACTGCCACTCCCACAATTCACCAAGTCTTCGACCGCCGCCTG
AATTTCAGTAACATATCTACCGATGCCTCCCTTTACTCCATGCTTCGGGC
GTGGGTGCAAGACGACCCGCTGCGGCAACCGCCATGGTATTTTCACGTCA
AGCAGGAAGGGAGGGAGGGAGGAAGGGCCCTCCATTCGTCGCCCCCTTCA
TCTCTATACTTTTCGTCTTCGATGGTAGAAGGAGGACAAGAAATAGGGGA
AATAGGAGGGTTCTTCCTTCCACCCCCCTTGCCAGAGACGGCCATGACGC
TGCTGAAAGGGTCTGTCGCTCCTGCTGCTCCTCTTTCTCCCTCTTCTTCT
CCTGCACCTCTCGCTGCTGGCATTGCTGCCAAAGGTACCACCATTTCTAC
AAGCAGCAGGACGATGAACAGAGACCGTAAGTCGGCACCAGCACCAGCAG
CAGCGGCACCACCACCGCTACCAGCACCAGCACCAACATCAGCAGGCTTG
GCTATTAATGGGTTGCAGCACGTTCCAACGGAAATCCTTCTGGATCTTCA
CGTGGGCTTCTTCCGGCAGGTCAGAAAAGGTTTGGTCAAAGTGAGAGAGA
GGAGGGTGGGGAGGTTTCGGCATCGGTTGGCGTTGTTGGGGTTGGTGGGA
GGGAAAAGAAAGAGGACGAGAAGGAGGGAGGGAACGATGGTGGATGAGCG
GATACAGGAGTAG
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protein sequence of NO12G00780.1

>NO12G00780.1-protein ID=NO12G00780.1-protein|Name=NO12G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MARPAAISTAAAGSTSTSTSSSASSSTGNNPSSSNSTATPTIHQVFDRRL
NFSNISTDASLYSMLRAWVQDDPLRQPPWYFHVKQEGREGGRALHSSPPS
SLYFSSSMVEGGQEIGEIGGFFLPPPLPETAMTLLKGSVAPAAPLSPSSS
PAPLAAGIAAKGTTISTSSRTMNRDRKSAPAPAAAAPPPLPAPAPTSAGL
AINGLQHVPTEILLDLHVGFFRQVRKGLVKVRERRVGRFRHRLALLGLVG
GKRKRTRRREGTMVDERIQE*
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mRNA from alignment at chr12:263032..263844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00780.1 ID=NO12G00780.1|Name=NO12G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=813bp|location=Sequence derived from alignment at chr12:263032..263844- (Nannochloropsis oceanica)
ATGGCAAGGCCCGCTGCTATCTCCACCGCAGCAGCTGGATCCACCTCCAC
CTCTACCTCCTCTTCCGCCTCCTCCTCGACAGGCAACAATCCATCGAGCA
GCAATAGCACTGCCACTCCCACAATTCACCAAGTCTTCGACCGCCGCCTG
AATTTCAGTAACATATCTACCGATGCCTCCCTTTACTCCATGCTTCGGGC
GTGGGTGCAAGACGACCCGCTGCGGCAACCGCCATGGTATTTTCACGTCA
AGCAGGAAGGGAGGGAGGGAGGAAGGGCCCTCCATTCGTCGCCCCCTTCA
TCTCTATACTTTTCGTCTTCGATGGTAGAAGGAGGACAAGAAATAGGGGA
AATAGGAGGGTTCTTCCTTCCACCCCCCTTGCCAGAGACGGCCATGACGC
TGCTGAAAGGGTCTGTCGCTCCTGCTGCTCCTCTTTCTCCCTCTTCTTCT
CCTGCACCTCTCGCTGCTGGCATTGCTGCCAAAGGTACCACCATTTCTAC
AAGCAGCAGGACGATGAACAGAGACCGTAAGTCGGCACCAGCACCAGCAG
CAGCGGCACCACCACCGCTACCAGCACCAGCACCAACATCAGCAGGCTTG
GCTATTAATGGGTTGCAGCACGTTCCAACGGAAATCCTTCTGGATCTTCA
CGTGGGCTTCTTCCGGCAGGTCAGAAAAGGTTTGGTCAAAGTGAGAGAGA
GGAGGGTGGGGAGGTTTCGGCATCGGTTGGCGTTGTTGGGGTTGGTGGGA
GGGAAAAGAAAGAGGACGAGAAGGAGGGAGGGAACGATGGTGGATGAGCG
GATACAGGAGTAG
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Coding sequence (CDS) from alignment at chr12:263032..263844-

>NO12G00780.1 ID=NO12G00780.1|Name=NO12G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at chr12:263032..263844- (Nannochloropsis oceanica)
ATGGCAAGGCCCGCTGCTATCTCCACCGCAGCAGCTGGATCCACCTCCAC
CTCTACCTCCTCTTCCGCCTCCTCCTCGACAGGCAACAATCCATCGAGCA
GCAATAGCACTGCCACTCCCACAATTCACCAAGTCTTCGACCGCCGCCTG
AATTTCAGTAACATATCTACCGATGCCTCCCTTTACTCCATGCTTCGGGC
GTGGGTGCAAGACGACCCGCTGCGGCAACCGCCATGGTATTTTCACGTCA
AGCAGGAAGGGAGGGAGGGAGGAAGGGCCCTCCATTCGTCGCCCCCTTCA
TCTCTATACTTTTCGTCTTCGATGGTAGAAGGAGGACAAGAAATAGGGGA
AATAGGAGGGTTCTTCCTTCCACCCCCCTTGCCAGAGACGGCCATGACGC
TGCTGAAAGGGTCTGTCGCTCCTGCTGCTCCTCTTTCTCCCTCTTCTTCT
CCTGCACCTCTCGCTGCTGGCATTGCTGCCAAAGGTACCACCATTTCTAC
AAGCAGCAGGACGATGAACAGAGACCGTAAGTCGGCACCAGCACCAGCAG
CAGCGGCACCACCACCGCTACCAGCACCAGCACCAACATCAGCAGGCTTG
GCTATTAATGGGTTGCAGCACGTTCCAACGGAAATCCTTCTGGATCTTCA
CGTGGGCTTCTTCCGGCAGGTCAGAAAAGGTTTGGTCAAAGTGAGAGAGA
GGAGGGTGGGGAGGTTTCGGCATCGGTTGGCGTTGTTGGGGTTGGTGGGA
GGGAAAAGAAAGAGGACGAGAAGGAGGGAGGGAACGATGGTGGATGAGCG
GATACAGGAGTAG
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Synonyms
Publications