NO12G00560, NO12G00560 (gene) Nannochloropsis oceanica

Overview
NameNO12G00560
Unique NameNO12G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2114
Alignment locationchr12:208347..210460 -

Link to JBrowse

Properties
Property NameValue
DescriptionLeucine-rich repeat, ribonuclease inhibitor subtype
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:208347..210460 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
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BLAST of NO12G00560 vs. NCBI_GenBank
Match: XP_005856030.1 (hypothetical protein NGA_0514900 [Nannochloropsis gaditana CCMP526] >EKU20323.1 hypothetical protein NGA_0514900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 193.4 bits (490), Expect = 2.000e-45
Identity = 133/313 (42.49%), Postives = 166/313 (53.04%), Query Frame = 0 
Query:   13 FHTSSARNPPAPCSSSISSPPSAISK-MELVGGGCFIPLFSHAGVDELIGQTIVSFLTVKGALNTSSTCRAAAQFSVGDCAMLRGMTFKYLDLVYPQIPRFTSLRVLSLSNNPLGDQGAHLLANALITLAGKQPSLPSSLPHXXXXXXXXXXFEKVHTSKYKYDPTDILIPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILSLLRAFALGTCDSLLSLDLSQNKLYSQSVVALAGVLTGEEGEEGREINNYLQLQQQQIGEGGREGGFGRHDWP-LPRLQCLQLANVWASSTGAAALAAAFSRGAC 324
            F  +S  +  +  S SI  P     + ++ VGGGC IPLF H GVD+LIGQT++SFLTV GAL+T+STCR AA FS+ DC ++ G+ FK+L LVYP++PRF SLR+LSLS+NPLGD GA LLA AL++LAGKQPS  SS                +H +  +  P                                           SLL  F  G CD L SLDLS+N+LY+  +VA A +L     E+GR                  E        P LPRLQ L L NVWAS+ GAAALAAAF+ GAC
Sbjct:   26 FSAASLASTSSFFSFSIPPPQKLHGRGLQFVGGGCLIPLFHHVGVDDLIGQTMLSFLTVHGALSTASTCRVAASFSLRDCLVIYGIKFKHLHLVYPRLPRFASLRILSLSDNPLGDPGARLLAQALLSLAGKQPSSSSS------------RLVMLHLANCQIGP---------------------------------------IGFSSLLVTFESGACDGLTSLDLSRNRLYAPGLVAFARLL-----EKGRXXXXXXXXXXXXXXXRMAEVVPPPSFLPRLPRLQHLLLGNVWASAIGAAALAAAFASGAC 282
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BLAST of NO12G00560 vs. NCBI_GenBank
Match: EWM25964.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 149.1 bits (375), Expect = 4.400e-32
Identity = 192/292 (65.75%), Postives = 209/292 (71.58%), Query Frame = 0 
Query:  293 LPRLQCLQLANVWASSTGAAALAAAFSRGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEGGNGEKPFVYYHVREGGLSLWQQQQRQPRHDFASASYLTSASLXXXXXXXXXXXXXXXPPS-PLEKLQHLDLFLNHAGDEGACELAASLAHGLLPSLIFLDLAANRISQEGVGGLVSVLEE--EGWRG-XXXXXXXXXXXXXXXVNLAFNLLPWEKESYAHAMPRGV 581
            LPRLQ L L NVWAS+ GAAALAAAF+ GAC              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXX E G   ++PF YYHVRE G+++   ++   R DFAS         XXXXXXXXXX       S PL+ LQ L+LFLN AGDEGA E+AA+LAHG LPSL FLDLAANRI+QEGVGGLVS L+E  +G  G                +NLAFNLLPWEKESY HAMP GV
Sbjct:   14 LPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGGRERDRPFRYYHVREEGMNVGGGRRDHLRPDFASXXXXXXXXXXXXXXXXXXXTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSALQEDRDGIEGEGGVYLRVRRRRKRPDLNLAFNLLPWEKESYVHAMPPGV 305
The following BLAST results are available for this feature:
BLAST of NO12G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005856030.12.000e-4542.49hypothetical protein NGA_0514900 [Nannochloropsis ... [more]
EWM25964.14.400e-3265.75Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL128nonsL128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR011ngnoR011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009960NSK009960Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00560.1NO12G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|661329gene_9969Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100691g2gene4559Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00560.1NO12G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00560 ID=NO12G00560|Name=NO12G00560|organism=Nannochloropsis oceanica|type=gene|length=2114bp
ATGGTCTCCGCTCTCTCCTCGTCATCTTCCTTTTCCTTCCACACCTCTTC
GGCCAGAAATCCTCCTGCTCCTTGTTCGTCTTCTATTTCCTCCCCTCCTT
CCGCCATCTCCAAAATGGAACTCGTCGGTGGCGGATGCTTCATCCCCCTT
TTCTCGCACGCCGGCGTCGACGAGTTGATCGGACAAACTATCGTCTCCTT
TCTCACAGTAAAAGGCGCGTTGAACACGTCTAGTACCTGCCGGGCTGCTG
CTCAGTTTTCCGTGGGCGATTGTGCAATGCTTCGTGGAATGACGTTTAAA
TATCTAGAgtaaggatagaggaaggaagagatgataagaaggatcgaggg
agggggggcactcatcgttctcgggtctgttttttcagaagtatgtgccg
cgattgactcatcccttcctccctcttcctcccttaccccaactccagTC
TCGTCTACCCGCAAATCCCTCGTTTCACCTCCCTCCGTGTCCTCAGCCTC
TCCAACAACCCCCTGGGGGATCAAGGCGCTCATCTCCTCGCCAACGCCCT
GATCACTCTCGCCGGCAAGCAGCCCTCTCTCCCTTCCTCCCTCCCTCATT
CTTCCTCCTCCTCCTCCTCGTCCTCCCGTTTCGAGAAGGTGCACACCAGC
AAGTACAAATACGATCCTACCGACATCCTAATTCCCTCCTCCTCCTCCTT
CTCCTCTTCCTCCTCCTCCGCTCCCTTTTCCTCTTCTTCTTCCCGCCTTG
AACACCTCCACCTCTCCAACACCCGCATCGGTCCTTCGGGCATCCTCTCC
CTTCTCCGCGCCTTCGCTTTGGGAACCTGCGATTCCCTTCTCAGCCTGGA
CTTATCTCAGAATAAATTGTACTCGCAGAGCGTCGTTGCGTTGGCAGGTG
TGTTGACGGGGGAGGAAGGGGAGGAAGGAAGGGAGATCAATAACTATTTA
CAGCTGCAGCAGCAGCAGATCGGGGAGGGAGGGAGGGAGGGAGGGTTTGG
ACGTCACGATTGGCCTTTACCTCGCCTGCAGTGTCTCCAATTGGCGAACG
TGTGGGCGTCGTCCACAGGGGCCGCTGCTCTTGCCGCTGCCTTCTCTCGC
GGTGCTTGCCCCTCCCTCCTCGCCTTGGACCTGAGCTACAACGACTTGTA
CAGgtaggaggggcaacgataatgctcatgtatatatgtatctatatgta
tataataacgagtgccttcacttgcatgggtgcatgcatgaatcaaagag
gtagaaaacacacgcaaaagaagcttaaatggacatggagacctagagcc
tgacccaccccaaccccttcaccctccccctgccctctcctccctcttcc
cacccttatcctccctgctctaccgcagTTCTGGCGCTCGGGCCCTTCTC
TCCTCCTTCGCTTCTGGCGCCTGCTCCATGATGCGAAGTCTCAATCTCGC
CGGAAATAAACTGGGCCTGGAGGGAGCGTGGGAGATAGCAAGGGCGTTTG
CAGGAGGGTGGGGTCAGGAATTGAGGCATTTGACGCTCGCCAGTAACGGT
CTCGGATCAGGAGGCGTCGAGGCGTTGATGGAGGCGGTGAGAGGAGGGGG
GGGGAGGGGGGAAGAAGGGGGTAATGGGGAGAAGCCTTTTGTGTACTATC
ATGTGAGGGAGGGAGGGTTGTCCCTCTGGCAGCAGCAGCAGCGGCAGCCG
CGGCATGACTTCGCCTCAGCCTCCTACCTTACCTCGGCCTCCCTCCCGTC
GTCCCCCTCAACCACGTCATCGTCCTCCACTTGCTCCCTCCCACCCTCCC
CCCTGGAGAAACTACAGCATCTCGACCTATTTCTGAACCACGCCGGCGAT
GAGGGGGCGTGTGAACTTGCCGCTTCCCTCGCACATGGCCTCCTTCCCTC
CCTCATATTCCTTGACCTGGCCGCCAATCGTATCAGCCAGGAAGGGGTGG
GGGGGCTGGTGAGTGTCCTTGAGGAGGAAGGATGGAGGGGGGGAGGGAGG
GAGGGGGGTTCGAAGGGGGGGAGAGAGAGCATGAGTGTGAATTTGGCGTT
CAACTTGTTGCCGTGGGAGAAAGAGAGTTATGCGCATGCCATGCCGCGGG
GGGTTACCTTGTAA
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protein sequence of NO12G00560.1

>NO12G00560.1-protein ID=NO12G00560.1-protein|Name=NO12G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MVSALSSSSSFSFHTSSARNPPAPCSSSISSPPSAISKMELVGGGCFIPL
FSHAGVDELIGQTIVSFLTVKGALNTSSTCRAAAQFSVGDCAMLRGMTFK
YLDLVYPQIPRFTSLRVLSLSNNPLGDQGAHLLANALITLAGKQPSLPSS
LPHSSSSSSSSSRFEKVHTSKYKYDPTDILIPSSSSFSSSSSSAPFSSSS
SRLEHLHLSNTRIGPSGILSLLRAFALGTCDSLLSLDLSQNKLYSQSVVA
LAGVLTGEEGEEGREINNYLQLQQQQIGEGGREGGFGRHDWPLPRLQCLQ
LANVWASSTGAAALAAAFSRGACPSLLALDLSYNDLYSSGARALLSSFAS
GACSMMRSLNLAGNKLGLEGAWEIARAFAGGWGQELRHLTLASNGLGSGG
VEALMEAVRGGGGRGEEGGNGEKPFVYYHVREGGLSLWQQQQRQPRHDFA
SASYLTSASLPSSPSTTSSSSTCSLPPSPLEKLQHLDLFLNHAGDEGACE
LAASLAHGLLPSLIFLDLAANRISQEGVGGLVSVLEEEGWRGGGREGGSK
GGRESMSVNLAFNLLPWEKESYAHAMPRGVTL*
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Synonyms
Publications