NO12G00560.1, NO12G00560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00560.1
Unique NameNO12G00560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1749
Alignment locationchr12:208347..210460 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:208347..210460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00560.1 vs.
Match: EWM25964.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 314.3 bits (804), Expect = 7.900e-82
Identity = 188/296 (63.51%), Postives = 221/296 (74.66%), Query Frame = 0 
Query:  293 LPRLQCLQLANVWASSTGAAALAAAFSRGACPSLLALDLSYNDLYSSGARALLSSFAS-GACSMMRSLNLAGNKLGLEGAWEIARAFAGGWGQELRHLTLASNGLGSGGVEALMEAVRGGGGRGEEGGNGEKPFVYYHVREGGLSLWQQQQRQPRHDFASASYLTSAS----LPSSPSTTSSSSTCSLPPSPLEKLQHLDLFLNHAGDEGACELAASLAHGLLPSLIFLDLAANRISQEGVGGLVSVLEE--EGWRG-GGREGGSKGGRESMSVNLAFNLLPWEKESYAHAMPRGV 581
            LPRLQ L L NVWAS+ GAAALAAAF+ GACPSLL LD+SYNDL+S+GA+ALLS+FAS GAC+ ++ LNLAGN LG +GAWEI RAFA GWG+ LR L+LASNGLG+GGVEAL+EA RGG GR E G   ++PF YYHVRE G+++   ++   R DFAS+SYL S S    LP     T  S   S    PL+ LQ L+LFLN AGDEGA E+AA+LAHG LPSL FLDLAANRI+QEGVGGLVS L+E  +G  G GG     +  R+   +NLAFNLLPWEKESY HAMP GV
Sbjct:   14 LPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGR-EGGRERDRPFRYYHVREEGMNVGGGRRDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSY---PLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSALQEDRDGIEGEGGVYLRVRRRRKRPDLNLAFNLLPWEKESYVHAMPPGV 305
The following BLAST results are available for this feature:
BLAST of NO12G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25964.17.900e-8263.51Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00560NO12G00560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00560.1NO12G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00560.1.cds1NO12G00560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00560.1.cds2NO12G00560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00560.1.cds3NO12G00560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00560.1 ID=NO12G00560.1|Name=NO12G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
ATGGTCTCCGCTCTCTCCTCGTCATCTTCCTTTTCCTTCCACACCTCTTC
GGCCAGAAATCCTCCTGCTCCTTGTTCGTCTTCTATTTCCTCCCCTCCTT
CCGCCATCTCCAAAATGGAACTCGTCGGTGGCGGATGCTTCATCCCCCTT
TTCTCGCACGCCGGCGTCGACGAGTTGATCGGACAAACTATCGTCTCCTT
TCTCACAGTAAAAGGCGCGTTGAACACGTCTAGTACCTGCCGGGCTGCTG
CTCAGTTTTCCGTGGGCGATTGTGCAATGCTTCGTGGAATGACGTTTAAA
TATCTAGATCTCGTCTACCCGCAAATCCCTCGTTTCACCTCCCTCCGTGT
CCTCAGCCTCTCCAACAACCCCCTGGGGGATCAAGGCGCTCATCTCCTCG
CCAACGCCCTGATCACTCTCGCCGGCAAGCAGCCCTCTCTCCCTTCCTCC
CTCCCTCATTCTTCCTCCTCCTCCTCCTCGTCCTCCCGTTTCGAGAAGGT
GCACACCAGCAAGTACAAATACGATCCTACCGACATCCTAATTCCCTCCT
CCTCCTCCTTCTCCTCTTCCTCCTCCTCCGCTCCCTTTTCCTCTTCTTCT
TCCCGCCTTGAACACCTCCACCTCTCCAACACCCGCATCGGTCCTTCGGG
CATCCTCTCCCTTCTCCGCGCCTTCGCTTTGGGAACCTGCGATTCCCTTC
TCAGCCTGGACTTATCTCAGAATAAATTGTACTCGCAGAGCGTCGTTGCG
TTGGCAGGTGTGTTGACGGGGGAGGAAGGGGAGGAAGGAAGGGAGATCAA
TAACTATTTACAGCTGCAGCAGCAGCAGATCGGGGAGGGAGGGAGGGAGG
GAGGGTTTGGACGTCACGATTGGCCTTTACCTCGCCTGCAGTGTCTCCAA
TTGGCGAACGTGTGGGCGTCGTCCACAGGGGCCGCTGCTCTTGCCGCTGC
CTTCTCTCGCGGTGCTTGCCCCTCCCTCCTCGCCTTGGACCTGAGCTACA
ACGACTTGTACAGTTCTGGCGCTCGGGCCCTTCTCTCCTCCTTCGCTTCT
GGCGCCTGCTCCATGATGCGAAGTCTCAATCTCGCCGGAAATAAACTGGG
CCTGGAGGGAGCGTGGGAGATAGCAAGGGCGTTTGCAGGAGGGTGGGGTC
AGGAATTGAGGCATTTGACGCTCGCCAGTAACGGTCTCGGATCAGGAGGC
GTCGAGGCGTTGATGGAGGCGGTGAGAGGAGGGGGGGGGAGGGGGGAAGA
AGGGGGTAATGGGGAGAAGCCTTTTGTGTACTATCATGTGAGGGAGGGAG
GGTTGTCCCTCTGGCAGCAGCAGCAGCGGCAGCCGCGGCATGACTTCGCC
TCAGCCTCCTACCTTACCTCGGCCTCCCTCCCGTCGTCCCCCTCAACCAC
GTCATCGTCCTCCACTTGCTCCCTCCCACCCTCCCCCCTGGAGAAACTAC
AGCATCTCGACCTATTTCTGAACCACGCCGGCGATGAGGGGGCGTGTGAA
CTTGCCGCTTCCCTCGCACATGGCCTCCTTCCCTCCCTCATATTCCTTGA
CCTGGCCGCCAATCGTATCAGCCAGGAAGGGGTGGGGGGGCTGGTGAGTG
TCCTTGAGGAGGAAGGATGGAGGGGGGGAGGGAGGGAGGGGGGTTCGAAG
GGGGGGAGAGAGAGCATGAGTGTGAATTTGGCGTTCAACTTGTTGCCGTG
GGAGAAAGAGAGTTATGCGCATGCCATGCCGCGGGGGGTTACCTTGTAA
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protein sequence of NO12G00560.1

>NO12G00560.1-protein ID=NO12G00560.1-protein|Name=NO12G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MVSALSSSSSFSFHTSSARNPPAPCSSSISSPPSAISKMELVGGGCFIPL
FSHAGVDELIGQTIVSFLTVKGALNTSSTCRAAAQFSVGDCAMLRGMTFK
YLDLVYPQIPRFTSLRVLSLSNNPLGDQGAHLLANALITLAGKQPSLPSS
LPHSSSSSSSSSRFEKVHTSKYKYDPTDILIPSSSSFSSSSSSAPFSSSS
SRLEHLHLSNTRIGPSGILSLLRAFALGTCDSLLSLDLSQNKLYSQSVVA
LAGVLTGEEGEEGREINNYLQLQQQQIGEGGREGGFGRHDWPLPRLQCLQ
LANVWASSTGAAALAAAFSRGACPSLLALDLSYNDLYSSGARALLSSFAS
GACSMMRSLNLAGNKLGLEGAWEIARAFAGGWGQELRHLTLASNGLGSGG
VEALMEAVRGGGGRGEEGGNGEKPFVYYHVREGGLSLWQQQQRQPRHDFA
SASYLTSASLPSSPSTTSSSSTCSLPPSPLEKLQHLDLFLNHAGDEGACE
LAASLAHGLLPSLIFLDLAANRISQEGVGGLVSVLEEEGWRGGGREGGSK
GGRESMSVNLAFNLLPWEKESYAHAMPRGVTL*
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mRNA from alignment at chr12:208347..210460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00560.1 ID=NO12G00560.1|Name=NO12G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2114bp|location=Sequence derived from alignment at chr12:208347..210460- (Nannochloropsis oceanica)
ATGGTCTCCGCTCTCTCCTCGTCATCTTCCTTTTCCTTCCACACCTCTTC
GGCCAGAAATCCTCCTGCTCCTTGTTCGTCTTCTATTTCCTCCCCTCCTT
CCGCCATCTCCAAAATGGAACTCGTCGGTGGCGGATGCTTCATCCCCCTT
TTCTCGCACGCCGGCGTCGACGAGTTGATCGGACAAACTATCGTCTCCTT
TCTCACAGTAAAAGGCGCGTTGAACACGTCTAGTACCTGCCGGGCTGCTG
CTCAGTTTTCCGTGGGCGATTGTGCAATGCTTCGTGGAATGACGTTTAAA
TATCTAGAGTAAGGATAGAGGAAGGAAGAGATGATAAGAAGGATCGAGGG
AGGGGGGGCACTCATCGTTCTCGGGTCTGTTTTTTCAGAAGTATGTGCCG
CGATTGACTCATCCCTTCCTCCCTCTTCCTCCCTTACCCCAACTCCAGTC
TCGTCTACCCGCAAATCCCTCGTTTCACCTCCCTCCGTGTCCTCAGCCTC
TCCAACAACCCCCTGGGGGATCAAGGCGCTCATCTCCTCGCCAACGCCCT
GATCACTCTCGCCGGCAAGCAGCCCTCTCTCCCTTCCTCCCTCCCTCATT
CTTCCTCCTCCTCCTCCTCGTCCTCCCGTTTCGAGAAGGTGCACACCAGC
AAGTACAAATACGATCCTACCGACATCCTAATTCCCTCCTCCTCCTCCTT
CTCCTCTTCCTCCTCCTCCGCTCCCTTTTCCTCTTCTTCTTCCCGCCTTG
AACACCTCCACCTCTCCAACACCCGCATCGGTCCTTCGGGCATCCTCTCC
CTTCTCCGCGCCTTCGCTTTGGGAACCTGCGATTCCCTTCTCAGCCTGGA
CTTATCTCAGAATAAATTGTACTCGCAGAGCGTCGTTGCGTTGGCAGGTG
TGTTGACGGGGGAGGAAGGGGAGGAAGGAAGGGAGATCAATAACTATTTA
CAGCTGCAGCAGCAGCAGATCGGGGAGGGAGGGAGGGAGGGAGGGTTTGG
ACGTCACGATTGGCCTTTACCTCGCCTGCAGTGTCTCCAATTGGCGAACG
TGTGGGCGTCGTCCACAGGGGCCGCTGCTCTTGCCGCTGCCTTCTCTCGC
GGTGCTTGCCCCTCCCTCCTCGCCTTGGACCTGAGCTACAACGACTTGTA
CAGGTAGGAGGGGCAACGATAATGCTCATGTATATATGTATCTATATGTA
TATAATAACGAGTGCCTTCACTTGCATGGGTGCATGCATGAATCAAAGAG
GTAGAAAACACACGCAAAAGAAGCTTAAATGGACATGGAGACCTAGAGCC
TGACCCACCCCAACCCCTTCACCCTCCCCCTGCCCTCTCCTCCCTCTTCC
CACCCTTATCCTCCCTGCTCTACCGCAGTTCTGGCGCTCGGGCCCTTCTC
TCCTCCTTCGCTTCTGGCGCCTGCTCCATGATGCGAAGTCTCAATCTCGC
CGGAAATAAACTGGGCCTGGAGGGAGCGTGGGAGATAGCAAGGGCGTTTG
CAGGAGGGTGGGGTCAGGAATTGAGGCATTTGACGCTCGCCAGTAACGGT
CTCGGATCAGGAGGCGTCGAGGCGTTGATGGAGGCGGTGAGAGGAGGGGG
GGGGAGGGGGGAAGAAGGGGGTAATGGGGAGAAGCCTTTTGTGTACTATC
ATGTGAGGGAGGGAGGGTTGTCCCTCTGGCAGCAGCAGCAGCGGCAGCCG
CGGCATGACTTCGCCTCAGCCTCCTACCTTACCTCGGCCTCCCTCCCGTC
GTCCCCCTCAACCACGTCATCGTCCTCCACTTGCTCCCTCCCACCCTCCC
CCCTGGAGAAACTACAGCATCTCGACCTATTTCTGAACCACGCCGGCGAT
GAGGGGGCGTGTGAACTTGCCGCTTCCCTCGCACATGGCCTCCTTCCCTC
CCTCATATTCCTTGACCTGGCCGCCAATCGTATCAGCCAGGAAGGGGTGG
GGGGGCTGGTGAGTGTCCTTGAGGAGGAAGGATGGAGGGGGGGAGGGAGG
GAGGGGGGTTCGAAGGGGGGGAGAGAGAGCATGAGTGTGAATTTGGCGTT
CAACTTGTTGCCGTGGGAGAAAGAGAGTTATGCGCATGCCATGCCGCGGG
GGGTTACCTTGTAA
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Coding sequence (CDS) from alignment at chr12:208347..210460-

>NO12G00560.1 ID=NO12G00560.1|Name=NO12G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr12:208347..210460- (Nannochloropsis oceanica)
ATGGTCTCCGCTCTCTCCTCGTCATCTTCCTTTTCCTTCCACACCTCTTC
GGCCAGAAATCCTCCTGCTCCTTGTTCGTCTTCTATTTCCTCCCCTCCTT
CCGCCATCTCCAAAATGGAACTCGTCGGTGGCGGATGCTTCATCCCCCTT
TTCTCGCACGCCGGCGTCGACGAGTTGATCGGACAAACTATCGTCTCCTT
TCTCACAGTAAAAGGCGCGTTGAACACGTCTAGTACCTGCCGGGCTGCTG
CTCAGTTTTCCGTGGGCGATTGTGCAATGCTTCGTGGAATGACGTTTAAA
TATCTAGATCTCGTCTACCCGCAAATCCCTCGTTTCACCTCCCTCCGTGT
CCTCAGCCTCTCCAACAACCCCCTGGGGGATCAAGGCGCTCATCTCCTCG
CCAACGCCCTGATCACTCTCGCCGGCAAGCAGCCCTCTCTCCCTTCCTCC
CTCCCTCATTCTTCCTCCTCCTCCTCCTCGTCCTCCCGTTTCGAGAAGGT
GCACACCAGCAAGTACAAATACGATCCTACCGACATCCTAATTCCCTCCT
CCTCCTCCTTCTCCTCTTCCTCCTCCTCCGCTCCCTTTTCCTCTTCTTCT
TCCCGCCTTGAACACCTCCACCTCTCCAACACCCGCATCGGTCCTTCGGG
CATCCTCTCCCTTCTCCGCGCCTTCGCTTTGGGAACCTGCGATTCCCTTC
TCAGCCTGGACTTATCTCAGAATAAATTGTACTCGCAGAGCGTCGTTGCG
TTGGCAGGTGTGTTGACGGGGGAGGAAGGGGAGGAAGGAAGGGAGATCAA
TAACTATTTACAGCTGCAGCAGCAGCAGATCGGGGAGGGAGGGAGGGAGG
GAGGGTTTGGACGTCACGATTGGCCTTTACCTCGCCTGCAGTGTCTCCAA
TTGGCGAACGTGTGGGCGTCGTCCACAGGGGCCGCTGCTCTTGCCGCTGC
CTTCTCTCGCGGTGCTTGCCCCTCCCTCCTCGCCTTGGACCTGAGCTACA
ACGACTTGTACAGTTCTGGCGCTCGGGCCCTTCTCTCCTCCTTCGCTTCT
GGCGCCTGCTCCATGATGCGAAGTCTCAATCTCGCCGGAAATAAACTGGG
CCTGGAGGGAGCGTGGGAGATAGCAAGGGCGTTTGCAGGAGGGTGGGGTC
AGGAATTGAGGCATTTGACGCTCGCCAGTAACGGTCTCGGATCAGGAGGC
GTCGAGGCGTTGATGGAGGCGGTGAGAGGAGGGGGGGGGAGGGGGGAAGA
AGGGGGTAATGGGGAGAAGCCTTTTGTGTACTATCATGTGAGGGAGGGAG
GGTTGTCCCTCTGGCAGCAGCAGCAGCGGCAGCCGCGGCATGACTTCGCC
TCAGCCTCCTACCTTACCTCGGCCTCCCTCCCGTCGTCCCCCTCAACCAC
GTCATCGTCCTCCACTTGCTCCCTCCCACCCTCCCCCCTGGAGAAACTAC
AGCATCTCGACCTATTTCTGAACCACGCCGGCGATGAGGGGGCGTGTGAA
CTTGCCGCTTCCCTCGCACATGGCCTCCTTCCCTCCCTCATATTCCTTGA
CCTGGCCGCCAATCGTATCAGCCAGGAAGGGGTGGGGGGGCTGGTGAGTG
TCCTTGAGGAGGAAGGATGGAGGGGGGGAGGGAGGGAGGGGGGTTCGAAG
GGGGGGAGAGAGAGCATGAGTGTGAATTTGGCGTTCAACTTGTTGCCGTG
GGAGAAAGAGAGTTATGCGCATGCCATGCCGCGGGGGGTTACCTTGTAA
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Synonyms
Publications