NO12G00420, NO12G00420 (gene) Nannochloropsis oceanica

Overview
NameNO12G00420
Unique NameNO12G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3181
Alignment locationchr12:149878..153058 -

Link to JBrowse

Properties
Property NameValue
DescriptionRegulator of chromosome condensation repeat containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:149878..153058 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens
Homology
[Close]
BLAST of NO12G00420 vs. NCBI_GenBank
Match: KRT81606.1 (Regulator of chromosome condensation repeat containing protein [Oryctes borbonicus])

HSP 1 Score: 69.3 bits (168), Expect = 6.300e-8
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0 
Query:  497 EVYSWGCGLYHALGHGKRANSWRPHLVEALEGIGGMRKDGRCMSGIQAIAAGGWHSAALSVTGEVYGW 565
            +VYS+GCGL   LGHG   N   P L+EAL G+            IQ IAAGGWHS A+SVTG++Y W
Sbjct:  167 DVYSFGCGLRGQLGHGTLENETNPTLIEALAGV-----------KIQKIAAGGWHSCAISVTGDLYTW 223
[Close]
BLAST of NO12G00420 vs. NCBI_GenBank
Match: XP_009829623.1 (hypothetical protein H257_06184 [Aphanomyces astaci] >ETV80676.1 hypothetical protein H257_06184 [Aphanomyces astaci])

HSP 1 Score: 68.2 bits (165), Expect = 1.400e-7
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:  498 VYSWGCGLYHALGHGKRANSWRPHLVEALEGIGGMRKDGRCMSGIQAIAAGGWHSAALSVTGEVYGW 565
            +Y++G GLYH LGHG   N + P  V +LEG+G ++++    +G+  +A G WH+AAL+ TG+VY W
Sbjct:  180 LYTFGWGLYHQLGHGTTNNVFTPTRVRSLEGVGQLQRNH--FTGLARVACGAWHTAALTTTGDVYTW 244
[Close]
BLAST of NO12G00420 vs. NCBI_GenBank
Match: XP_009829624.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV80677.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 68.2 bits (165), Expect = 1.400e-7
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:  498 VYSWGCGLYHALGHGKRANSWRPHLVEALEGIGGMRKDGRCMSGIQAIAAGGWHSAALSVTGEVYGW 565
            +Y++G GLYH LGHG   N + P  V +LEG+G ++++    +G+  +A G WH+AAL+ TG+VY W
Sbjct:  180 LYTFGWGLYHQLGHGTTNNVFTPTRVRSLEGVGQLQRNH--FTGLARVACGAWHTAALTTTGDVYTW 244
[Close]
BLAST of NO12G00420 vs. NCBI_GenBank
Match: OQR87793.1 (ultraviolet-B receptor UVR8 [Achlya hypogyna])

HSP 1 Score: 67.0 bits (162), Expect = 3.100e-7
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 0 
Query:  497 EVYSWGCGLYHALGHGKRANSWRPHLVEALEGIGGMRKDGRCMSGIQAIAAGGWHSAALSVTGEVYGW 565
            E+Y+ G GLYH LGHG  A+ + P  V +L G+G  R DG   SG+  ++ G WH+ AL+ TG++Y W
Sbjct:  176 ELYTMGWGLYHQLGHGSTADLFAPECVTSLLGVGDYR-DG-AFSGLTQVSCGAWHTVALTTTGDIYTW 241
The following BLAST results are available for this feature:
BLAST of NO12G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
KRT81606.16.300e-851.47Regulator of chromosome condensation repeat contai... [more]
XP_009829623.11.400e-744.78hypothetical protein H257_06184 [Aphanomyces astac... [more]
XP_009829624.11.400e-744.78hypothetical protein, variant [Aphanomyces astaci]... [more]
OQR87793.13.100e-745.59ultraviolet-B receptor UVR8 [Achlya hypogyna][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00420.1NO12G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|318447gene_10107Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00420.1NO12G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00420 ID=NO12G00420|Name=NO12G00420|organism=Nannochloropsis oceanica|type=gene|length=3181bp
GAAGGCATGCTATCACGCGGGGGGGGGGGTTGTTTTTTTAATAATATCAT
GCTATGGTTAAATTGTTTACGCCCTCAAGTAAATGATGGATGTGTCCCCT
GATGAGCCACAAACAGTCTACGATCCAGGATGGGGCCCGCAAGCTGTCGC
CGTTTCTCCCTGGCCTTGTATGTTGATAACATTTTTCAACGCACTCGAAA
CCCAAGTGCCCCTCTAAAACACAGGCATACTACAGAGATCTCCGAACATT
TTCGCACGTGTTGTGCCACACGGGCATAATGGCTTGATGCCATGCTGGAT
AGGCTGGACCAGCCTCCTGCTGTAGTCGATTAACCTCCTGCTTCCCTTGT
TGTCACGAGCTACAAGCATGCCGGGCTTCCCCGTCCGCATCCTCTCCTTG
GGCTACGCCCGCTACGGACAAAGCTACGGGCCAACTGATATCCTGGAGCT
ACCAGTGGTTCCTGATGGTGAAATTTTTGGCTCTGTCGGAGCTACTGTAG
CTGGTAGTCAACCTCCTCCCTCAAGTCCAGCAGTGATTACTGCCGCATGT
GGGGCCACGAGCAGCCTAGTTATTGTCTCCTCCACCAGCAGCAGTTTTGA
TATAAGTACAAACACCAGTACTTGTAGCATTAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAAC
AAGAACAACAACAACAACAACAACAACAACAACAACAACAGTAGTAGTAG
TAGTTATAGACCCCTCCCCATATTGTATGCTTGGGGCAGCGATCTGGTTG
GTGAGTTTTTGCAAGAAAGCGAGTCGGAAGCAGATAGAAGAGGAGGTGGA
AAAGAAGAAGAAGGAAAAGGAGAAGCAGCAGCGCCGCCTTCACGAGCAAC
TGCGGACAGAAACGAAGGTGCCGTAGGAACATCGCACAGTAAAGAAGCAA
GCAACACACTGGCGCAAGTCTCCTTGTCCTCCTTCCTCGTCCCTCCTCAC
TCTCCTGTCATGCCCTCGGTCATCATCCACCTTCTAGCATGTGGGCCACA
CCATGTTCTTGCAGTTGCCACCTCCATCAGCAGCTGTGGTAACAATAGCG
ACAGCAGCAGCAGCAGGAGGAGTAGTTACAGCACAACACTGTGGGCGTGG
GGGCTTAATCTACATAAACAGACGCTGGGCTTGGGTGGGTGCGGAGATTG
TTTATCGTGCAGCAGCAACAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCA
ACAGTAGCAACATTAATACCACTATTGACAAACGGGGAGGCGAAAGTACG
ACACGAGAAAATAATAAGAAAAAGGACGAAGATGTCGAGGTTGAAATAAT
CCCCTTCCCTCGACCAATTGCAGGATGGCCACCTCCAATTCCAGGAGAGG
GAGAGGAAGAGGGAGGGGGGGGGGCAAGGGAGGGATCAATCACGTGCTTG
GCGACGGGGGAGGGGCATACGTTAGTCGTGACAGATGGAGGGAGGAGGGT
ATGGGCGTGGGGCTGCGGCTCGTCGGGACAGCTAGGGATTGGGAGAAAGG
GACGGAGAAAGGGGTGGAGGGAGGATGATGATAAGGAGGAAGAGGAGGAG
GTGGTGGGAAAGGAGGAGGAGAACGGAGGGAGGGCGGCCTTGGGGAGCTG
CAGgtgagtttcaggcctcggcaagagatggcgattccagttcaacatgc
ctgtaggattacataaatataatataatagtaatacttatcatagctatg
catatatatatatgtattcaaagctccccttgtcaacaactccattttcc
gtttaatccatctcctcatatagACCTGTCCTGGTCGACTGGCCTCCTCC
GTCCCCTCCCTCCTTCTCGTCCTCCCCTCCTCCCCCACTGGTCCGTCAAG
TCGCCGTAGGGAAACGTCACAGTCTTCTTCTCACAGCTCCAGTAGCTCTT
CCTCCCCTTGCTCTTCATCGACCTGGAGGTGATGGAGGAGGAGGAGCAGG
AGAAGCAGGGAGGGGAGAAGGTGGGGAGGTGTATAGTTGGGGCTGCGGTC
TGTACCACGCGTTGGGCCACGGGAAGAGGGCGAATAGCTGGCGGCCTCAT
TTGGTGGAGGCACTGGAGGGGATAGGGGGGATGAGAAAAGgtagggagga
agggagagaaggtgggaggggaggaaggggaaaaagagtgagagtgggag
ggaaggcgttctcggagcctgcttttgttttacttgcgtctcactcatcc
ttttttctgtcctcctttcaaatctagATGGCCGCTGTATGAGCGGTATA
CAGGCCATTGCGGCGGGAGGTTGGCACAGTGCGGCTTTGTCGGTCACAGG
GGAGGTTTATGGCTGGGGATGGAATAAGCATGGCCAGCTCGGAGATGGAG
GAGAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGGTTGGAGCCGTTGCCT
CGTTTGTTAAGAAAGCCTGGAATGAAAGAAGAGGGGAAGGATGACGTCGT
CTACGACCAATTGGGAGCCGGGACTTCATACACCGCTGCCTTGTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCTTCC
CCCTCCTCCTCCTCTTCCTCCTTCTCCTTGTCCTTGTCCTCAAGAGTAAA
TAAGAAAGACGATGGAAAGAAGCGGCAACAGCAGCAAGTGCAGGAGGAGG
AGCAGCAGCACCACCACCATCACCACCAGCAGCACCATTACCATCAGCAG
CACCAGCAACACCAGCAGCAACAGCGGAAGTCTCGCTCTCTTTATGTCTG
GGGTCGGTTGGGCCTGAGCGAAACGGTGGAGGTTAGGAAGCATGAGAGCG
GTGTCGAAGGACAAGGAGGAGGGGGAGGAGGAGGAGGAAGGGGAGGAGGA
GATGGTGGTGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAGG
AAGAAGGGGAGGAGGAGGAGGCGGAGGAGCAGCAGCAGCAGTACGACAAA
CATCAGAGTTCTTGGAAAAGGGAAAGGGGGAAGTGAAGCTGGTGTGTGGA
TCATACCACCTCCTGCTTCTTCGCGGCGGCGGGGCTGAATGCGCGGCAGA
AAATAAGGACCACGGCACGGGTCCAGAATGGAAAGAAAGTGAATGCATGT
AAAATGTACCACTGATGCAAAATACTCAAAT
back to top

protein sequence of NO12G00420.1

>NO12G00420.1-protein ID=NO12G00420.1-protein|Name=NO12G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=826bp
MPGFPVRILSLGYARYGQSYGPTDILELPVVPDGEIFGSVGATVAGSQPP
PSSPAVITAACGATSSLVIVSSTSSSFDISTNTSTCSISSSSSSSSSSSS
SSSSNNNNNNNKNNNNNNNNNNNNSSSSSYRPLPILYAWGSDLVGEFLQE
SESEADRRGGGKEEEGKGEAAAPPSRATADRNEGAVGTSHSKEASNTLAQ
VSLSSFLVPPHSPVMPSVIIHLLACGPHHVLAVATSISSCGNNSDSSSSR
RSSYSTTLWAWGLNLHKQTLGLGGCGDCLSCSSNSSGSSSSGSSNSSNIN
TTIDKRGGESTTRENNKKKDEDVEVEIIPFPRPIAGWPPPIPGEGEEEGG
GGAREGSITCLATGEGHTLVVTDGGRRVWAWGCGSSGQLGIGRKGRRKGW
REDDDKEEEEEVVGKEEENGGRAALGSCRPVLVDWPPPSPPSFSSSPPPP
LVRQVAVGKRHSLLLTAPVALPPLALHRPGGDGGGGAGEAGRGEGGEVYS
WGCGLYHALGHGKRANSWRPHLVEALEGIGGMRKDGRCMSGIQAIAAGGW
HSAALSVTGEVYGWGWNKHGQLGDGGEGEGGGGGGGGLEPLPRLLRKPGM
KEEGKDDVVYDQLGAGTSYTAALSSSSSSSSSSSSSSPSSSSPSSSSSSF
SLSLSSRVNKKDDGKKRQQQQVQEEEQQHHHHHHQQHHYHQQHQQHQQQQ
RKSRSLYVWGRLGLSETVEVRKHESGVEGQGGGGGGGGRGGGDGGGGGGR
GGRGGGRGGRRGGGGGGGAAAAVRQTSEFLEKGKGEVKLVCGSYHLLLLR
GGGAECAAENKDHGTGPEWKESECM*
back to top
Synonyms
Publications