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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:149878..153058 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00420.1 vs.
Match: XP_009829623.1 (hypothetical protein H257_06184 [Aphanomyces astaci]; ETV80676.1 hypothetical protein H257_06184 [Aphanomyces astaci]) HSP 1 Score: 85.1 bits (209), Expect = 1.100e-12 Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 0
Query: 496 GEVYSWGCGLYHALGHGKRANSWRPHLVEALEGIGGMRKDGRCMSGIQAIAAGGWHSAALSVTGEVYGWGWNKHGQLG 574
G +Y++G GLYH LGHG N + P V +LEG+G ++++ +G+ +A G WH+AAL+ TG+VY WGW +HGQLG
Sbjct: 178 GHLYTFGWGLYHQLGHGTTNNVFTPTRVRSLEGVGQLQRNH--FTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLG 253
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00420.1 ID=NO12G00420.1|Name=NO12G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2874bp GAAGGCATGCTATCACGCGGGGGGGGGGGTTGTTTTTTTAATAATATCAT GCTATGGTTAAATTGTTTACGCCCTCAAGTAAATGATGGATGTGTCCCCT GATGAGCCACAAACAGTCTACGATCCAGGATGGGGCCCGCAAGCTGTCGC CGTTTCTCCCTGGCCTTGTATGTTGATAACATTTTTCAACGCACTCGAAA CCCAAGTGCCCCTCTAAAACACAGGCATACTACAGAGATCTCCGAACATT TTCGCACGTGTTGTGCCACACGGGCATAATGGCTTGATGCCATGCTGGAT AGGCTGGACCAGCCTCCTGCTGTAGTCGATTAACCTCCTGCTTCCCTTGT TGTCACGAGCTACAAGCATGCCGGGCTTCCCCGTCCGCATCCTCTCCTTG GGCTACGCCCGCTACGGACAAAGCTACGGGCCAACTGATATCCTGGAGCT ACCAGTGGTTCCTGATGGTGAAATTTTTGGCTCTGTCGGAGCTACTGTAG CTGGTAGTCAACCTCCTCCCTCAAGTCCAGCAGTGATTACTGCCGCATGT GGGGCCACGAGCAGCCTAGTTATTGTCTCCTCCACCAGCAGCAGTTTTGA TATAAGTACAAACACCAGTACTTGTAGCATTAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAAC AAGAACAACAACAACAACAACAACAACAACAACAACAACAGTAGTAGTAG TAGTTATAGACCCCTCCCCATATTGTATGCTTGGGGCAGCGATCTGGTTG GTGAGTTTTTGCAAGAAAGCGAGTCGGAAGCAGATAGAAGAGGAGGTGGA AAAGAAGAAGAAGGAAAAGGAGAAGCAGCAGCGCCGCCTTCACGAGCAAC TGCGGACAGAAACGAAGGTGCCGTAGGAACATCGCACAGTAAAGAAGCAA GCAACACACTGGCGCAAGTCTCCTTGTCCTCCTTCCTCGTCCCTCCTCAC TCTCCTGTCATGCCCTCGGTCATCATCCACCTTCTAGCATGTGGGCCACA CCATGTTCTTGCAGTTGCCACCTCCATCAGCAGCTGTGGTAACAATAGCG ACAGCAGCAGCAGCAGGAGGAGTAGTTACAGCACAACACTGTGGGCGTGG GGGCTTAATCTACATAAACAGACGCTGGGCTTGGGTGGGTGCGGAGATTG TTTATCGTGCAGCAGCAACAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCA ACAGTAGCAACATTAATACCACTATTGACAAACGGGGAGGCGAAAGTACG ACACGAGAAAATAATAAGAAAAAGGACGAAGATGTCGAGGTTGAAATAAT CCCCTTCCCTCGACCAATTGCAGGATGGCCACCTCCAATTCCAGGAGAGG GAGAGGAAGAGGGAGGGGGGGGGGCAAGGGAGGGATCAATCACGTGCTTG GCGACGGGGGAGGGGCATACGTTAGTCGTGACAGATGGAGGGAGGAGGGT ATGGGCGTGGGGCTGCGGCTCGTCGGGACAGCTAGGGATTGGGAGAAAGG GACGGAGAAAGGGGTGGAGGGAGGATGATGATAAGGAGGAAGAGGAGGAG GTGGTGGGAAAGGAGGAGGAGAACGGAGGGAGGGCGGCCTTGGGGAGCTG CAGACCTGTCCTGGTCGACTGGCCTCCTCCGTCCCCTCCCTCCTTCTCGT CCTCCCCTCCTCCCCCACTGGTCCGTCAAGTCGCCGTAGGGAAACGTCAC AGTCTTCTTCTCACAGCTCCAGTAGCTCTTCCTCCCCTTGCTCTTCATCG ACCTGGAGGTGATGGAGGAGGAGGAGCAGGAGAAGCAGGGAGGGGAGAAG GTGGGGAGGTGTATAGTTGGGGCTGCGGTCTGTACCACGCGTTGGGCCAC GGGAAGAGGGCGAATAGCTGGCGGCCTCATTTGGTGGAGGCACTGGAGGG GATAGGGGGGATGAGAAAAGATGGCCGCTGTATGAGCGGTATACAGGCCA TTGCGGCGGGAGGTTGGCACAGTGCGGCTTTGTCGGTCACAGGGGAGGTT TATGGCTGGGGATGGAATAAGCATGGCCAGCTCGGAGATGGAGGAGAAGG AGAAGGAGGAGGAGGAGGAGGAGGAGGGTTGGAGCCGTTGCCTCGTTTGT TAAGAAAGCCTGGAATGAAAGAAGAGGGGAAGGATGACGTCGTCTACGAC CAATTGGGAGCCGGGACTTCATACACCGCTGCCTTGTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCTTCCCCCTCCT CCTCCTCTTCCTCCTTCTCCTTGTCCTTGTCCTCAAGAGTAAATAAGAAA GACGATGGAAAGAAGCGGCAACAGCAGCAAGTGCAGGAGGAGGAGCAGCA GCACCACCACCATCACCACCAGCAGCACCATTACCATCAGCAGCACCAGC AACACCAGCAGCAACAGCGGAAGTCTCGCTCTCTTTATGTCTGGGGTCGG TTGGGCCTGAGCGAAACGGTGGAGGTTAGGAAGCATGAGAGCGGTGTCGA AGGACAAGGAGGAGGGGGAGGAGGAGGAGGAAGGGGAGGAGGAGATGGTG GTGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAGGAAGAAGG GGAGGAGGAGGAGGCGGAGGAGCAGCAGCAGCAGTACGACAAACATCAGA GTTCTTGGAAAAGGGAAAGGGGGAAGTGAAGCTGGTGTGTGGATCATACC ACCTCCTGCTTCTTCGCGGCGGCGGGGCTGAATGCGCGGCAGAAAATAAG GACCACGGCACGGGTCCAGAATGGAAAGAAAGTGAATGCATGTAAAATGT ACCACTGATGCAAAATACTCAAAT back to topprotein sequence of NO12G00420.1 >NO12G00420.1-protein ID=NO12G00420.1-protein|Name=NO12G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=826bp MPGFPVRILSLGYARYGQSYGPTDILELPVVPDGEIFGSVGATVAGSQPP PSSPAVITAACGATSSLVIVSSTSSSFDISTNTSTCSISSSSSSSSSSSS SSSSNNNNNNNKNNNNNNNNNNNNSSSSSYRPLPILYAWGSDLVGEFLQE SESEADRRGGGKEEEGKGEAAAPPSRATADRNEGAVGTSHSKEASNTLAQ VSLSSFLVPPHSPVMPSVIIHLLACGPHHVLAVATSISSCGNNSDSSSSR RSSYSTTLWAWGLNLHKQTLGLGGCGDCLSCSSNSSGSSSSGSSNSSNIN TTIDKRGGESTTRENNKKKDEDVEVEIIPFPRPIAGWPPPIPGEGEEEGG GGAREGSITCLATGEGHTLVVTDGGRRVWAWGCGSSGQLGIGRKGRRKGW REDDDKEEEEEVVGKEEENGGRAALGSCRPVLVDWPPPSPPSFSSSPPPP LVRQVAVGKRHSLLLTAPVALPPLALHRPGGDGGGGAGEAGRGEGGEVYS WGCGLYHALGHGKRANSWRPHLVEALEGIGGMRKDGRCMSGIQAIAAGGW HSAALSVTGEVYGWGWNKHGQLGDGGEGEGGGGGGGGLEPLPRLLRKPGM KEEGKDDVVYDQLGAGTSYTAALSSSSSSSSSSSSSSPSSSSPSSSSSSF SLSLSSRVNKKDDGKKRQQQQVQEEEQQHHHHHHQQHHYHQQHQQHQQQQ RKSRSLYVWGRLGLSETVEVRKHESGVEGQGGGGGGGGRGGGDGGGGGGR GGRGGGRGGRRGGGGGGGAAAAVRQTSEFLEKGKGEVKLVCGSYHLLLLR GGGAECAAENKDHGTGPEWKESECM* back to topmRNA from alignment at chr12:149878..153058- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00420.1 ID=NO12G00420.1|Name=NO12G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=3181bp|location=Sequence derived from alignment at chr12:149878..153058- (Nannochloropsis oceanica) GAAGGCATGCTATCACGCGGGGGGGGGGGTTGTTTTTTTAATAATATCAT
GCTATGGTTAAATTGTTTACGCCCTCAAGTAAATGATGGATGTGTCCCCT
GATGAGCCACAAACAGTCTACGATCCAGGATGGGGCCCGCAAGCTGTCGC
CGTTTCTCCCTGGCCTTGTATGTTGATAACATTTTTCAACGCACTCGAAA
CCCAAGTGCCCCTCTAAAACACAGGCATACTACAGAGATCTCCGAACATT
TTCGCACGTGTTGTGCCACACGGGCATAATGGCTTGATGCCATGCTGGAT
AGGCTGGACCAGCCTCCTGCTGTAGTCGATTAACCTCCTGCTTCCCTTGT
TGTCACGAGCTACAAGCATGCCGGGCTTCCCCGTCCGCATCCTCTCCTTG
GGCTACGCCCGCTACGGACAAAGCTACGGGCCAACTGATATCCTGGAGCT
ACCAGTGGTTCCTGATGGTGAAATTTTTGGCTCTGTCGGAGCTACTGTAG
CTGGTAGTCAACCTCCTCCCTCAAGTCCAGCAGTGATTACTGCCGCATGT
GGGGCCACGAGCAGCCTAGTTATTGTCTCCTCCACCAGCAGCAGTTTTGA
TATAAGTACAAACACCAGTACTTGTAGCATTAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAAC
AAGAACAACAACAACAACAACAACAACAACAACAACAACAGTAGTAGTAG
TAGTTATAGACCCCTCCCCATATTGTATGCTTGGGGCAGCGATCTGGTTG
GTGAGTTTTTGCAAGAAAGCGAGTCGGAAGCAGATAGAAGAGGAGGTGGA
AAAGAAGAAGAAGGAAAAGGAGAAGCAGCAGCGCCGCCTTCACGAGCAAC
TGCGGACAGAAACGAAGGTGCCGTAGGAACATCGCACAGTAAAGAAGCAA
GCAACACACTGGCGCAAGTCTCCTTGTCCTCCTTCCTCGTCCCTCCTCAC
TCTCCTGTCATGCCCTCGGTCATCATCCACCTTCTAGCATGTGGGCCACA
CCATGTTCTTGCAGTTGCCACCTCCATCAGCAGCTGTGGTAACAATAGCG
ACAGCAGCAGCAGCAGGAGGAGTAGTTACAGCACAACACTGTGGGCGTGG
GGGCTTAATCTACATAAACAGACGCTGGGCTTGGGTGGGTGCGGAGATTG
TTTATCGTGCAGCAGCAACAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCA
ACAGTAGCAACATTAATACCACTATTGACAAACGGGGAGGCGAAAGTACG
ACACGAGAAAATAATAAGAAAAAGGACGAAGATGTCGAGGTTGAAATAAT
CCCCTTCCCTCGACCAATTGCAGGATGGCCACCTCCAATTCCAGGAGAGG
GAGAGGAAGAGGGAGGGGGGGGGGCAAGGGAGGGATCAATCACGTGCTTG
GCGACGGGGGAGGGGCATACGTTAGTCGTGACAGATGGAGGGAGGAGGGT
ATGGGCGTGGGGCTGCGGCTCGTCGGGACAGCTAGGGATTGGGAGAAAGG
GACGGAGAAAGGGGTGGAGGGAGGATGATGATAAGGAGGAAGAGGAGGAG
GTGGTGGGAAAGGAGGAGGAGAACGGAGGGAGGGCGGCCTTGGGGAGCTG
CAGGTGAGTTTCAGGCCTCGGCAAGAGATGGCGATTCCAGTTCAACATGC
CTGTAGGATTACATAAATATAATATAATAGTAATACTTATCATAGCTATG
CATATATATATATGTATTCAAAGCTCCCCTTGTCAACAACTCCATTTTCC
GTTTAATCCATCTCCTCATATAGACCTGTCCTGGTCGACTGGCCTCCTCC
GTCCCCTCCCTCCTTCTCGTCCTCCCCTCCTCCCCCACTGGTCCGTCAAG
TCGCCGTAGGGAAACGTCACAGTCTTCTTCTCACAGCTCCAGTAGCTCTT
CCTCCCCTTGCTCTTCATCGACCTGGAGGTGATGGAGGAGGAGGAGCAGG
AGAAGCAGGGAGGGGAGAAGGTGGGGAGGTGTATAGTTGGGGCTGCGGTC
TGTACCACGCGTTGGGCCACGGGAAGAGGGCGAATAGCTGGCGGCCTCAT
TTGGTGGAGGCACTGGAGGGGATAGGGGGGATGAGAAAAGGTAGGGAGGA
AGGGAGAGAAGGTGGGAGGGGAGGAAGGGGAAAAAGAGTGAGAGTGGGAG
GGAAGGCGTTCTCGGAGCCTGCTTTTGTTTTACTTGCGTCTCACTCATCC
TTTTTTCTGTCCTCCTTTCAAATCTAGATGGCCGCTGTATGAGCGGTATA
CAGGCCATTGCGGCGGGAGGTTGGCACAGTGCGGCTTTGTCGGTCACAGG
GGAGGTTTATGGCTGGGGATGGAATAAGCATGGCCAGCTCGGAGATGGAG
GAGAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGGTTGGAGCCGTTGCCT
CGTTTGTTAAGAAAGCCTGGAATGAAAGAAGAGGGGAAGGATGACGTCGT
CTACGACCAATTGGGAGCCGGGACTTCATACACCGCTGCCTTGTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCTTCC
CCCTCCTCCTCCTCTTCCTCCTTCTCCTTGTCCTTGTCCTCAAGAGTAAA
TAAGAAAGACGATGGAAAGAAGCGGCAACAGCAGCAAGTGCAGGAGGAGG
AGCAGCAGCACCACCACCATCACCACCAGCAGCACCATTACCATCAGCAG
CACCAGCAACACCAGCAGCAACAGCGGAAGTCTCGCTCTCTTTATGTCTG
GGGTCGGTTGGGCCTGAGCGAAACGGTGGAGGTTAGGAAGCATGAGAGCG
GTGTCGAAGGACAAGGAGGAGGGGGAGGAGGAGGAGGAAGGGGAGGAGGA
GATGGTGGTGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAGG
AAGAAGGGGAGGAGGAGGAGGCGGAGGAGCAGCAGCAGCAGTACGACAAA
CATCAGAGTTCTTGGAAAAGGGAAAGGGGGAAGTGAAGCTGGTGTGTGGA
TCATACCACCTCCTGCTTCTTCGCGGCGGCGGGGCTGAATGCGCGGCAGA
AAATAAGGACCACGGCACGGGTCCAGAATGGAAAGAAAGTGAATGCATGT
AAAATGTACCACTGATGCAAAATACTCAAAT back to topCoding sequence (CDS) from alignment at chr12:149878..153058- >NO12G00420.1 ID=NO12G00420.1|Name=NO12G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=2478bp|location=Sequence derived from alignment at chr12:149878..153058- (Nannochloropsis oceanica) ATGCCGGGCTTCCCCGTCCGCATCCTCTCCTTGGGCTACGCCCGCTACGG ACAAAGCTACGGGCCAACTGATATCCTGGAGCTACCAGTGGTTCCTGATG GTGAAATTTTTGGCTCTGTCGGAGCTACTGTAGCTGGTAGTCAACCTCCT CCCTCAAGTCCAGCAGTGATTACTGCCGCATGTGGGGCCACGAGCAGCCT AGTTATTGTCTCCTCCACCAGCAGCAGTTTTGATATAAGTACAAACACCA GTACTTGTAGCATTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAACAACAACAACAACAACAACAAGAACAACAACAACAA CAACAACAACAACAACAACAACAGTAGTAGTAGTAGTTATAGACCCCTCC CCATATTGTATGCTTGGGGCAGCGATCTGGTTGGTGAGTTTTTGCAAGAA AGCGAGTCGGAAGCAGATAGAAGAGGAGGTGGAAAAGAAGAAGAAGGAAA AGGAGAAGCAGCAGCGCCGCCTTCACGAGCAACTGCGGACAGAAACGAAG GTGCCGTAGGAACATCGCACAGTAAAGAAGCAAGCAACACACTGGCGCAA GTCTCCTTGTCCTCCTTCCTCGTCCCTCCTCACTCTCCTGTCATGCCCTC GGTCATCATCCACCTTCTAGCATGTGGGCCACACCATGTTCTTGCAGTTG CCACCTCCATCAGCAGCTGTGGTAACAATAGCGACAGCAGCAGCAGCAGG AGGAGTAGTTACAGCACAACACTGTGGGCGTGGGGGCTTAATCTACATAA ACAGACGCTGGGCTTGGGTGGGTGCGGAGATTGTTTATCGTGCAGCAGCA ACAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCAACAGTAGCAACATTAAT ACCACTATTGACAAACGGGGAGGCGAAAGTACGACACGAGAAAATAATAA GAAAAAGGACGAAGATGTCGAGGTTGAAATAATCCCCTTCCCTCGACCAA TTGCAGGATGGCCACCTCCAATTCCAGGAGAGGGAGAGGAAGAGGGAGGG GGGGGGGCAAGGGAGGGATCAATCACGTGCTTGGCGACGGGGGAGGGGCA TACGTTAGTCGTGACAGATGGAGGGAGGAGGGTATGGGCGTGGGGCTGCG GCTCGTCGGGACAGCTAGGGATTGGGAGAAAGGGACGGAGAAAGGGGTGG AGGGAGGATGATGATAAGGAGGAAGAGGAGGAGGTGGTGGGAAAGGAGGA GGAGAACGGAGGGAGGGCGGCCTTGGGGAGCTGCAGACCTGTCCTGGTCG ACTGGCCTCCTCCGTCCCCTCCCTCCTTCTCGTCCTCCCCTCCTCCCCCA CTGGTCCGTCAAGTCGCCGTAGGGAAACGTCACAGTCTTCTTCTCACAGC TCCAGTAGCTCTTCCTCCCCTTGCTCTTCATCGACCTGGAGGTGATGGAG GAGGAGGAGCAGGAGAAGCAGGGAGGGGAGAAGGTGGGGAGGTGTATAGT TGGGGCTGCGGTCTGTACCACGCGTTGGGCCACGGGAAGAGGGCGAATAG CTGGCGGCCTCATTTGGTGGAGGCACTGGAGGGGATAGGGGGGATGAGAA AAGATGGCCGCTGTATGAGCGGTATACAGGCCATTGCGGCGGGAGGTTGG CACAGTGCGGCTTTGTCGGTCACAGGGGAGGTTTATGGCTGGGGATGGAA TAAGCATGGCCAGCTCGGAGATGGAGGAGAAGGAGAAGGAGGAGGAGGAG GAGGAGGAGGGTTGGAGCCGTTGCCTCGTTTGTTAAGAAAGCCTGGAATG AAAGAAGAGGGGAAGGATGACGTCGTCTACGACCAATTGGGAGCCGGGAC TTCATACACCGCTGCCTTGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTCCCCCTCCTCCTCTTCCCCCTCCTCCTCCTCTTCCTCCTTC TCCTTGTCCTTGTCCTCAAGAGTAAATAAGAAAGACGATGGAAAGAAGCG GCAACAGCAGCAAGTGCAGGAGGAGGAGCAGCAGCACCACCACCATCACC ACCAGCAGCACCATTACCATCAGCAGCACCAGCAACACCAGCAGCAACAG CGGAAGTCTCGCTCTCTTTATGTCTGGGGTCGGTTGGGCCTGAGCGAAAC GGTGGAGGTTAGGAAGCATGAGAGCGGTGTCGAAGGACAAGGAGGAGGGG GAGGAGGAGGAGGAAGGGGAGGAGGAGATGGTGGTGGAGGAGGAGGAAGA GGAGGAAGAGGAGGAGGAAGAGGAGGAAGAAGGGGAGGAGGAGGAGGCGG AGGAGCAGCAGCAGCAGTACGACAAACATCAGAGTTCTTGGAAAAGGGAA AGGGGGAAGTGAAGCTGGTGTGTGGATCATACCACCTCCTGCTTCTTCGC GGCGGCGGGGCTGAATGCGCGGCAGAAAATAAGGACCACGGCACGGGTCC AGAATGGAAAGAAAGTGAATGCATGTAA back to top
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