NO12G00350, NO12G00350 (gene) Nannochloropsis oceanica

Overview
NameNO12G00350
Unique NameNO12G00350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2344
Alignment locationchr12:122906..125249 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:122906..125249 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO12G00350 vs. NCBI_GenBank
Match: EWM25987.1 (hypothetical protein Naga_100151g10 [Nannochloropsis gaditana])

HSP 1 Score: 424.1 bits (1089), Expect = 4.700e-115
Identity = 203/248 (81.85%), Postives = 225/248 (90.73%), Query Frame = 0
Query:  122 SSPLRNRTAEWEEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYRPPLEIAQASPSQPYDCRIHGEVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPVTVGEE 370
            S+  RNRT+EWEEDAAWLTNQVL YQAH+ALS+EALGKRHAVVG TPFD+GFKHEEKYRPPLEI +ASP  PY+CRIHGEV++GAKLVAPCLCRGTGKWMWFADMNRRRRRDP+SSR CGTCHA+IDYQAYQ+FGS L +LVSWPLDHA  FR +LLA  + SS  LF+ P+S+LVIR+LTSSLFWRQHSLWARV+YGPLPLKIVMYKYVGQLLWSYFL+ E AVRETLAEAES+LLERALPVTV  E
Sbjct:  188 STSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLLLASFVFSS-VLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTVVAE 434          
BLAST of NO12G00350 vs. NCBI_GenBank
Match: CBJ27241.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.7 bits (335), Expect = 1.300e-27
Identity = 79/236 (33.47%), Postives = 128/236 (54.24%), Query Frame = 0
Query:  133 EEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYRPP--LEIAQASPSQPYDCRIHGEVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPVTV 367
            E+   W+ +Q+ +YQ   AL S  L ++           G+K  E    P  L  A ++  +  DCR++ E EVG K+VAPC C+GT KW+ F+ +N  RR++    + C TC   IDY  Y+ +G    K VS  L+++ A R V + V+ +   +L    + VL++R+LTS + W+ +     ++  PLPL+I+  +++        L +E  VR++L + ES +LE  LPVTV
Sbjct:   44 EKAVEWMMHQLCMYQTRTALISNPLAEK-----------GYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEAAKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATR-VAIGVLATMVLWLLSPLLHVLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESRILESRLPVTV 267          
BLAST of NO12G00350 vs. NCBI_GenBank
Match: XP_005854849.1 (adhesin-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU21516.1 adhesin-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.2 bits (274), Expect = 1.500e-20
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0
Query:  122 SSPLRNRTAEWEEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYR 181
            S+  RNRT+EWEEDAAWLTNQVL YQAH+ALS+EALGKRHAVVG TPFD+GFKHEEKYR
Sbjct:  120 STSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYR 178          
BLAST of NO12G00350 vs. NCBI_GenBank
Match: CEM11818.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-15
Identity = 56/181 (30.94%), Postives = 94/181 (51.93%), Query Frame = 0
Query:  184 EIAQASPSQPYDCRIHGEVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPV 365
            E A ++ S P  C I+ E E G K+  P   +GT KW+ F+ +N+ RR+DP   R        +D+    +  S+    VS  LD +P     L+ + ++ +  +    +  +++RLL S L+WR + LW+R +Y   P KI++ ++V          + D VR+ L + ES LL+ +LPV
Sbjct:  188 EFALSTASSPKSCLINIEAEEGTKVAGP---KGTDKWVTFSQLNKYRRKDPQKLRDLWYGQYDVDFGPINELASTQALAVSAMLD-SPVLIPSLVILSIAGALGVSAGALWAVLVRLLNSHLWWRSYGLWSRFLYVSAPFKILLGRWVYSSCRDVVKALADVVRDRLLDLESHLLQASLPV 364          
BLAST of NO12G00350 vs. NCBI_GenBank
Match: OEU11644.1 (hypothetical protein FRACYDRAFT_270650 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.5 bits (184), Expect = 4.100e-10
Identity = 65/254 (25.59%), Postives = 106/254 (41.73%), Query Frame = 0
Query:  131 EWEEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYRP---PLEIAQASPSQPYDCRIHGEVEVGAKLVAPC-LCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSS-------------FFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPVTVG 368
            E+++  A+   Q ++ Q      SEAL  R     P+  D     + K +P     + A ++   P  C I  E EVG+KL+ P  L   T KW+   ++NR RR DP       +         Y    S  +    + L      +GV L  +L  S               + +  +  +V R L S   W + + WAR ++  LP K+V+++ V       F K+    ++ L + E  +LE  +P+TVG
Sbjct:  172 EYDKLLAYRMKQQVLLQLRATALSEALVARGLPGIPSLRDVS-TLDGKLKPKKVDWDCALSTEEDPKHCLISYEPEVGSKLIVPMELAGDTDKWITLRELNRLRREDPSKVEPMWS-------DKYAVLSSWFSPQSRYSLLQHVGLKGVFLNTLLEGSTLSVVVGVLLVMGIIICMPVIEYIVGRFLVSGYLWMKWASWARFVHVGLPFKLVIFQIVFGQASKLFAKLVSLAKDNLVKLECKILEETIPLTVG 417          
The following BLAST results are available for this feature:
BLAST of NO12G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM25987.14.700e-11581.85hypothetical protein Naga_100151g10 [Nannochlorops... [more]
CBJ27241.11.300e-2733.47conserved unknown protein [Ectocarpus siliculosus][more]
XP_005854849.11.500e-2084.75adhesin-like protein, partial [Nannochloropsis gad... [more]
CEM11818.13.200e-1530.94unnamed protein product [Vitrella brassicaformis C... [more]
OEU11644.14.100e-1025.59hypothetical protein FRACYDRAFT_270650 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009922NSK009922Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00350.1NO12G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609702gene_10098Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100151g10gene4535Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00350.1NO12G00350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00350 ID=NO12G00350|Name=NO12G00350|organism=Nannochloropsis oceanica|type=gene|length=2344bp
GGTGTGGGGCTCGTTTCGGCCTGTGAGTGAAGAGAATGAAGCGAGCCGAT
GAGGATGCGTGAAGACAATGACGACGCAAATTTTGTGGCCATAGGACAGC
AGTCGTCATGGATCTGGACTTAGACTCGGAACTTTGCGGCGTTGGTGGGC
GAGCTGTAATTTTGCTGTTCCTGCTGCTCTACCAACGACCAGGGGCAGGC
AGGGTAGTGGCAGGGTGGTGGTGGTGATGATGGCGATGGTGATGAGTACG
AGAGAGGCTGAAGAAAAAGACTGAACTCAATGCGCAGTGGCTGCATGTGA
GCTTTTTACACACGCAATTTTTATAAGTTGATGGGTAGTGAGGCTTGTGT
GGTTGTGTGTATCATCAACGTTGCTGTAGCGAGTGTTCAAAAATCGAAAG
GGCGGCAAGGGCGCGAGAGGCACTTGGGCGCCGCTTCCCGTCATGTCTCG
TCTCTTTTCAGGCGCATTTAAGGCATCCTGACTGCACGCAAGATTAATAT
TATCCCCTGTCAAATGAAACGCTGCAGGCCACCCTTTTCAGTCTGTCTGA
GAGTATAATTGTGTAGCTGGGAGGGTAAAATTAGATGCGGCAAGTTGTCA
GGGAAGCCGCAGAGAGTGTTTGCCTGACTTGCTTGCTTCCCATTCGCACA
TGGCCACCACTTCCCAGTACTACCACACGCATAACATAGTTGTGATCGTA
CATCTTATGTAAGCGGTGTTGGCTACCTACGCCCGTGGCGAAAGGAGGCG
CTTCTCATCCTGCGCCGCACTCGAGCATCATCCAATCCTCACACGAGTGG
TATCATGTGACCATAGTCCCTTTTCCCGTACGAAACCCACCAACGCTGAG
CACGCATACACGGACAGACACGGCCTAGATGATGGAGCCCCTCGCTACGC
CGTCAACCTCCGCCTCCTCGTCTTTCGGCTCCTCCTCTTCCTCTTCTCGG
CCTGCCCTCCTCTTGTCTCTCTTCAGCCTCACCGTCGCCTCTTCCTCAAG
CACCCAACAATATGTCTACTCAGCCGCCGTTCTGCCCTCTCAATCACCGT
TACCAGAAGACAAGGCCACTCCTCACTCCCCCATGCCCCTCCTCGGCCGC
CACCAGTGCCACCACCTCTCCGCACGCAGCCACGTTCGGAAAGGGTCACC
CTCCTCTTCCTCTTCCTCCTCCGCCTCCCTCTGCTCCATGCTAACGCGTC
GCGGTGGCAGCAGCACCAGCACTATCCACCATCCCTCCCCCTCATCCCCT
CTTCGGAATCGCACCGCAGAATGGGAGGAGGACGCGGCGTGGCTTACCAA
TCAAGTTTTGATCTATCAAGCACACCTTGCCTTGTCCTCGGAGGCGCTGG
GCAAGCGGCACGCAGTGGTAGGGCCCACACCCTTCGACTACGGATTTAAG
CATGAGGAGAAGTACAGgtaggtgtgtgaatggctgtcgtggtggtcgtc
gaaaggggttgatattttagctgcttgtcatggttatgagggttgaggga
gtgggctggtcgtatgtagtgcttgcgagcctgtcattcccttattctaa
tgtttcatgccattgggaacatttttcgcttggaacgcattaaataaatc
tccttttgctctaacatttttctccctcctttactttttccctccctttc
ctcccttccctcccccagGCCCCCTTTGGAGATCGCGCAAGCCTCTCCCT
CCCAGCCTTACGACTGCCGGATCCACGGCGAGGTCGAAGTGGGGGCCAAG
CTTGTCGCCCCCTGCTTGTGTCGAGGGACTGGAAAGTGGATGTGGTTCGC
CGATATGAACAGACGGCGTCGGCGGGACCCAGTATCCAGCCGGGTGTGTG
GGACTTGCCACGCACGCATCGACTATCAGGCGTATCAACAATTTGGTTCA
TCCCTAACGAAGCTCGTTTCCTGGCCCCTTGATCACGCACCGGCCTTTCG
CGGTGTGCTCTTGGCCGTAATCCTCTCTTCCTCGTTCTTCCTCTTCCTTG
ACCCAGTCTCAGTCCTGGTTATTCGTTTGCTGACATCCTCATTGTTCTGG
CGACAACACTCCCTATGGGCACGCGTAATATATGGCCCTTTGCCTCTGAA
GATTGTGATGTACAAGTATGTTGGGCAACTGCTTTGGTCCTACTTTTTGA
AGATGGAGGATGCGGTGAGAGAGACCCTGGCGGAAGCGGAAAGTGTGTTA
TTGGAGAGAGCGCTGCCTGTCACTGTTGGGGAGGAGTACTCAGCAGGAGA
AGGCGAAGGGGAAGCAGGAGATGGAGCAGAGGAAGAGGATTAGTTTTGCT
CAGTAAGGGAGTGGGAAAAAAAGAAATATTCGTATAAACTTTTC
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protein sequence of NO12G00350.1

>NO12G00350.1-protein ID=NO12G00350.1-protein|Name=NO12G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MMEPLATPSTSASSSFGSSSSSSRPALLLSLFSLTVASSSSTQQYVYSAA
VLPSQSPLPEDKATPHSPMPLLGRHQCHHLSARSHVRKGSPSSSSSSSAS
LCSMLTRRGGSSTSTIHHPSPSSPLRNRTAEWEEDAAWLTNQVLIYQAHL
ALSSEALGKRHAVVGPTPFDYGFKHEEKYRPPLEIAQASPSQPYDCRIHG
EVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQ
AYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRL
LTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETL
AEAESVLLERALPVTVGEEYSAGEGEGEAGDGAEEED*
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Synonyms
Publications