NO12G00350.1, NO12G00350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00350.1
Unique NameNO12G00350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2093
Alignment locationchr12:122906..125249 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:122906..125249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00350.1 vs.
Match: EWM25987.1 (hypothetical protein Naga_100151g10 [Nannochloropsis gaditana])

HSP 1 Score: 427.6 bits (1098), Expect = 4.300e-116
Identity = 214/276 (77.54%), Postives = 240/276 (86.96%), Query Frame = 0 
Query:   94 SSSSSASLCSMLTRRGGSSTSTIHHPSPSSPLRNRTAEWEEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYRPPLEIAQASPSQPYDCRIHGEVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPVTVGEE 370
            S+S S  + S+L  RGGS+ +T    S S   RNRT+EWEEDAAWLTNQVL YQAH+ALS+EALGKRHAVVG TPFD+GFKHEEKYRPPLEI +ASP  PY+CRIHGEV++GAKLVAPCLCRGTGKWMWFADMNRRRRRDP+SSR CGTCHA+IDYQAYQ+FGS L +LVSWPLDHA  FR +LLA  + SS  LF+ P+S+LVIR+LTSSLFWRQHSLWARV+YGPLPLKIVMYKYVGQLLWSYFL+ E AVRETLAEAES+LLERALPVTV  E
Sbjct:  162 STSCSFPVPSLLACRGGSTGATPAQASTSP--RNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLLLASFVFSS-VLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTVVAE 434
The following BLAST results are available for this feature:
BLAST of NO12G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25987.14.300e-11677.54hypothetical protein Naga_100151g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00350NO12G00350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00350.1NO12G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00350.1.cds1NO12G00350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00350.1.cds2NO12G00350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00350.1 ID=NO12G00350.1|Name=NO12G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2093bp
GGTGTGGGGCTCGTTTCGGCCTGTGAGTGAAGAGAATGAAGCGAGCCGAT
GAGGATGCGTGAAGACAATGACGACGCAAATTTTGTGGCCATAGGACAGC
AGTCGTCATGGATCTGGACTTAGACTCGGAACTTTGCGGCGTTGGTGGGC
GAGCTGTAATTTTGCTGTTCCTGCTGCTCTACCAACGACCAGGGGCAGGC
AGGGTAGTGGCAGGGTGGTGGTGGTGATGATGGCGATGGTGATGAGTACG
AGAGAGGCTGAAGAAAAAGACTGAACTCAATGCGCAGTGGCTGCATGTGA
GCTTTTTACACACGCAATTTTTATAAGTTGATGGGTAGTGAGGCTTGTGT
GGTTGTGTGTATCATCAACGTTGCTGTAGCGAGTGTTCAAAAATCGAAAG
GGCGGCAAGGGCGCGAGAGGCACTTGGGCGCCGCTTCCCGTCATGTCTCG
TCTCTTTTCAGGCGCATTTAAGGCATCCTGACTGCACGCAAGATTAATAT
TATCCCCTGTCAAATGAAACGCTGCAGGCCACCCTTTTCAGTCTGTCTGA
GAGTATAATTGTGTAGCTGGGAGGGTAAAATTAGATGCGGCAAGTTGTCA
GGGAAGCCGCAGAGAGTGTTTGCCTGACTTGCTTGCTTCCCATTCGCACA
TGGCCACCACTTCCCAGTACTACCACACGCATAACATAGTTGTGATCGTA
CATCTTATGTAAGCGGTGTTGGCTACCTACGCCCGTGGCGAAAGGAGGCG
CTTCTCATCCTGCGCCGCACTCGAGCATCATCCAATCCTCACACGAGTGG
TATCATGTGACCATAGTCCCTTTTCCCGTACGAAACCCACCAACGCTGAG
CACGCATACACGGACAGACACGGCCTAGATGATGGAGCCCCTCGCTACGC
CGTCAACCTCCGCCTCCTCGTCTTTCGGCTCCTCCTCTTCCTCTTCTCGG
CCTGCCCTCCTCTTGTCTCTCTTCAGCCTCACCGTCGCCTCTTCCTCAAG
CACCCAACAATATGTCTACTCAGCCGCCGTTCTGCCCTCTCAATCACCGT
TACCAGAAGACAAGGCCACTCCTCACTCCCCCATGCCCCTCCTCGGCCGC
CACCAGTGCCACCACCTCTCCGCACGCAGCCACGTTCGGAAAGGGTCACC
CTCCTCTTCCTCTTCCTCCTCCGCCTCCCTCTGCTCCATGCTAACGCGTC
GCGGTGGCAGCAGCACCAGCACTATCCACCATCCCTCCCCCTCATCCCCT
CTTCGGAATCGCACCGCAGAATGGGAGGAGGACGCGGCGTGGCTTACCAA
TCAAGTTTTGATCTATCAAGCACACCTTGCCTTGTCCTCGGAGGCGCTGG
GCAAGCGGCACGCAGTGGTAGGGCCCACACCCTTCGACTACGGATTTAAG
CATGAGGAGAAGTACAGGCCCCCTTTGGAGATCGCGCAAGCCTCTCCCTC
CCAGCCTTACGACTGCCGGATCCACGGCGAGGTCGAAGTGGGGGCCAAGC
TTGTCGCCCCCTGCTTGTGTCGAGGGACTGGAAAGTGGATGTGGTTCGCC
GATATGAACAGACGGCGTCGGCGGGACCCAGTATCCAGCCGGGTGTGTGG
GACTTGCCACGCACGCATCGACTATCAGGCGTATCAACAATTTGGTTCAT
CCCTAACGAAGCTCGTTTCCTGGCCCCTTGATCACGCACCGGCCTTTCGC
GGTGTGCTCTTGGCCGTAATCCTCTCTTCCTCGTTCTTCCTCTTCCTTGA
CCCAGTCTCAGTCCTGGTTATTCGTTTGCTGACATCCTCATTGTTCTGGC
GACAACACTCCCTATGGGCACGCGTAATATATGGCCCTTTGCCTCTGAAG
ATTGTGATGTACAAGTATGTTGGGCAACTGCTTTGGTCCTACTTTTTGAA
GATGGAGGATGCGGTGAGAGAGACCCTGGCGGAAGCGGAAAGTGTGTTAT
TGGAGAGAGCGCTGCCTGTCACTGTTGGGGAGGAGTACTCAGCAGGAGAA
GGCGAAGGGGAAGCAGGAGATGGAGCAGAGGAAGAGGATTAGTTTTGCTC
AGTAAGGGAGTGGGAAAAAAAGAAATATTCGTATAAACTTTTC
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protein sequence of NO12G00350.1

>NO12G00350.1-protein ID=NO12G00350.1-protein|Name=NO12G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MMEPLATPSTSASSSFGSSSSSSRPALLLSLFSLTVASSSSTQQYVYSAA
VLPSQSPLPEDKATPHSPMPLLGRHQCHHLSARSHVRKGSPSSSSSSSAS
LCSMLTRRGGSSTSTIHHPSPSSPLRNRTAEWEEDAAWLTNQVLIYQAHL
ALSSEALGKRHAVVGPTPFDYGFKHEEKYRPPLEIAQASPSQPYDCRIHG
EVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQ
AYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRL
LTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETL
AEAESVLLERALPVTVGEEYSAGEGEGEAGDGAEEED*
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mRNA from alignment at chr12:122906..125249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00350.1 ID=NO12G00350.1|Name=NO12G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2344bp|location=Sequence derived from alignment at chr12:122906..125249- (Nannochloropsis oceanica)
GGTGTGGGGCTCGTTTCGGCCTGTGAGTGAAGAGAATGAAGCGAGCCGAT
GAGGATGCGTGAAGACAATGACGACGCAAATTTTGTGGCCATAGGACAGC
AGTCGTCATGGATCTGGACTTAGACTCGGAACTTTGCGGCGTTGGTGGGC
GAGCTGTAATTTTGCTGTTCCTGCTGCTCTACCAACGACCAGGGGCAGGC
AGGGTAGTGGCAGGGTGGTGGTGGTGATGATGGCGATGGTGATGAGTACG
AGAGAGGCTGAAGAAAAAGACTGAACTCAATGCGCAGTGGCTGCATGTGA
GCTTTTTACACACGCAATTTTTATAAGTTGATGGGTAGTGAGGCTTGTGT
GGTTGTGTGTATCATCAACGTTGCTGTAGCGAGTGTTCAAAAATCGAAAG
GGCGGCAAGGGCGCGAGAGGCACTTGGGCGCCGCTTCCCGTCATGTCTCG
TCTCTTTTCAGGCGCATTTAAGGCATCCTGACTGCACGCAAGATTAATAT
TATCCCCTGTCAAATGAAACGCTGCAGGCCACCCTTTTCAGTCTGTCTGA
GAGTATAATTGTGTAGCTGGGAGGGTAAAATTAGATGCGGCAAGTTGTCA
GGGAAGCCGCAGAGAGTGTTTGCCTGACTTGCTTGCTTCCCATTCGCACA
TGGCCACCACTTCCCAGTACTACCACACGCATAACATAGTTGTGATCGTA
CATCTTATGTAAGCGGTGTTGGCTACCTACGCCCGTGGCGAAAGGAGGCG
CTTCTCATCCTGCGCCGCACTCGAGCATCATCCAATCCTCACACGAGTGG
TATCATGTGACCATAGTCCCTTTTCCCGTACGAAACCCACCAACGCTGAG
CACGCATACACGGACAGACACGGCCTAGATGATGGAGCCCCTCGCTACGC
CGTCAACCTCCGCCTCCTCGTCTTTCGGCTCCTCCTCTTCCTCTTCTCGG
CCTGCCCTCCTCTTGTCTCTCTTCAGCCTCACCGTCGCCTCTTCCTCAAG
CACCCAACAATATGTCTACTCAGCCGCCGTTCTGCCCTCTCAATCACCGT
TACCAGAAGACAAGGCCACTCCTCACTCCCCCATGCCCCTCCTCGGCCGC
CACCAGTGCCACCACCTCTCCGCACGCAGCCACGTTCGGAAAGGGTCACC
CTCCTCTTCCTCTTCCTCCTCCGCCTCCCTCTGCTCCATGCTAACGCGTC
GCGGTGGCAGCAGCACCAGCACTATCCACCATCCCTCCCCCTCATCCCCT
CTTCGGAATCGCACCGCAGAATGGGAGGAGGACGCGGCGTGGCTTACCAA
TCAAGTTTTGATCTATCAAGCACACCTTGCCTTGTCCTCGGAGGCGCTGG
GCAAGCGGCACGCAGTGGTAGGGCCCACACCCTTCGACTACGGATTTAAG
CATGAGGAGAAGTACAGGTAGGTGTGTGAATGGCTGTCGTGGTGGTCGTC
GAAAGGGGTTGATATTTTAGCTGCTTGTCATGGTTATGAGGGTTGAGGGA
GTGGGCTGGTCGTATGTAGTGCTTGCGAGCCTGTCATTCCCTTATTCTAA
TGTTTCATGCCATTGGGAACATTTTTCGCTTGGAACGCATTAAATAAATC
TCCTTTTGCTCTAACATTTTTCTCCCTCCTTTACTTTTTCCCTCCCTTTC
CTCCCTTCCCTCCCCCAGGCCCCCTTTGGAGATCGCGCAAGCCTCTCCCT
CCCAGCCTTACGACTGCCGGATCCACGGCGAGGTCGAAGTGGGGGCCAAG
CTTGTCGCCCCCTGCTTGTGTCGAGGGACTGGAAAGTGGATGTGGTTCGC
CGATATGAACAGACGGCGTCGGCGGGACCCAGTATCCAGCCGGGTGTGTG
GGACTTGCCACGCACGCATCGACTATCAGGCGTATCAACAATTTGGTTCA
TCCCTAACGAAGCTCGTTTCCTGGCCCCTTGATCACGCACCGGCCTTTCG
CGGTGTGCTCTTGGCCGTAATCCTCTCTTCCTCGTTCTTCCTCTTCCTTG
ACCCAGTCTCAGTCCTGGTTATTCGTTTGCTGACATCCTCATTGTTCTGG
CGACAACACTCCCTATGGGCACGCGTAATATATGGCCCTTTGCCTCTGAA
GATTGTGATGTACAAGTATGTTGGGCAACTGCTTTGGTCCTACTTTTTGA
AGATGGAGGATGCGGTGAGAGAGACCCTGGCGGAAGCGGAAAGTGTGTTA
TTGGAGAGAGCGCTGCCTGTCACTGTTGGGGAGGAGTACTCAGCAGGAGA
AGGCGAAGGGGAAGCAGGAGATGGAGCAGAGGAAGAGGATTAGTTTTGCT
CAGTAAGGGAGTGGGAAAAAAAGAAATATTCGTATAAACTTTTC
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Coding sequence (CDS) from alignment at chr12:122906..125249-

>NO12G00350.1 ID=NO12G00350.1|Name=NO12G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr12:122906..125249- (Nannochloropsis oceanica)
ATGATGGAGCCCCTCGCTACGCCGTCAACCTCCGCCTCCTCGTCTTTCGG
CTCCTCCTCTTCCTCTTCTCGGCCTGCCCTCCTCTTGTCTCTCTTCAGCC
TCACCGTCGCCTCTTCCTCAAGCACCCAACAATATGTCTACTCAGCCGCC
GTTCTGCCCTCTCAATCACCGTTACCAGAAGACAAGGCCACTCCTCACTC
CCCCATGCCCCTCCTCGGCCGCCACCAGTGCCACCACCTCTCCGCACGCA
GCCACGTTCGGAAAGGGTCACCCTCCTCTTCCTCTTCCTCCTCCGCCTCC
CTCTGCTCCATGCTAACGCGTCGCGGTGGCAGCAGCACCAGCACTATCCA
CCATCCCTCCCCCTCATCCCCTCTTCGGAATCGCACCGCAGAATGGGAGG
AGGACGCGGCGTGGCTTACCAATCAAGTTTTGATCTATCAAGCACACCTT
GCCTTGTCCTCGGAGGCGCTGGGCAAGCGGCACGCAGTGGTAGGGCCCAC
ACCCTTCGACTACGGATTTAAGCATGAGGAGAAGTACAGGCCCCCTTTGG
AGATCGCGCAAGCCTCTCCCTCCCAGCCTTACGACTGCCGGATCCACGGC
GAGGTCGAAGTGGGGGCCAAGCTTGTCGCCCCCTGCTTGTGTCGAGGGAC
TGGAAAGTGGATGTGGTTCGCCGATATGAACAGACGGCGTCGGCGGGACC
CAGTATCCAGCCGGGTGTGTGGGACTTGCCACGCACGCATCGACTATCAG
GCGTATCAACAATTTGGTTCATCCCTAACGAAGCTCGTTTCCTGGCCCCT
TGATCACGCACCGGCCTTTCGCGGTGTGCTCTTGGCCGTAATCCTCTCTT
CCTCGTTCTTCCTCTTCCTTGACCCAGTCTCAGTCCTGGTTATTCGTTTG
CTGACATCCTCATTGTTCTGGCGACAACACTCCCTATGGGCACGCGTAAT
ATATGGCCCTTTGCCTCTGAAGATTGTGATGTACAAGTATGTTGGGCAAC
TGCTTTGGTCCTACTTTTTGAAGATGGAGGATGCGGTGAGAGAGACCCTG
GCGGAAGCGGAAAGTGTGTTATTGGAGAGAGCGCTGCCTGTCACTGTTGG
GGAGGAGTACTCAGCAGGAGAAGGCGAAGGGGAAGCAGGAGATGGAGCAG
AGGAAGAGGATTAG
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Synonyms
Publications